Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 2.0e-147 525.8 274 100.0
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.3e-103 379.4 287 73.9
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.8e-95 353.2 277 67.5
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 3.0e-95 352.4 277 66.8
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 5.2e-95 351.7 277 66.8
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 6.8e-95 351.3 277 67.1
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 8.8e-95 350.9 278 66.9
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 1.2e-94 350.5 278 67.3
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.0e-94 349.7 277 66.8
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.6e-94 349.4 278 66.5
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 2.6e-94 349.4 277 66.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 2.6e-94 349.4 277 66.1
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.4e-94 348.6 277 66.8
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 7.5e-94 347.8 277 66.4
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 1.3e-93 347.1 276 66.7
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.3e-93 347.1 277 66.1
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 1.3e-93 347.1 272 66.5
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.7e-93 346.7 278 66.5
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.7e-93 346.7 275 66.2
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 2.2e-93 346.3 277 65.7
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.2e-93 346.3 277 66.1
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 2.8e-93 345.9 278 65.8
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 2.8e-93 345.9 277 65.7
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.8e-93 345.9 277 66.1
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 4.9e-93 345.1 277 65.7
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.9e-93 345.1 277 65.7
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.8e-92 343.2 278 66.2
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 1.8e-92 343.2 300 63.7
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.4e-92 342.8 277 65.3
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 2.4e-92 342.8 276 65.9
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.4e-92 342.8 277 64.6
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.4e-92 342.8 278 65.1
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 3.1e-92 342.4 278 65.8
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 3.1e-92 342.4 277 65.0
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 5.4e-92 341.7 277 65.0
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 9.2e-92 340.9 276 65.6
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 9.2e-92 340.9 278 64.0
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 9.2e-92 340.9 276 65.6
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.2e-91 340.5 277 65.7
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 1.2e-91 340.5 276 65.6
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-91 340.5 277 64.3
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.6e-91 340.1 277 65.0
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 2.0e-91 339.7 278 65.5
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 2.7e-91 339.3 278 64.0
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 3.5e-91 339.0 278 65.1
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 4.5e-91 338.6 277 64.6
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 4.5e-91 338.6 277 64.6
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 5.9e-91 338.2 277 65.3
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 7.8e-91 337.8 277 64.6
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.0e-90 337.4 274 64.2
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 1.0e-90 337.4 277 63.9
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 2.3e-90 336.3 278 62.9
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 2.3e-90 336.3 276 64.1
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 2.9e-90 335.9 261 67.8
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 2.9e-90 335.9 277 64.3
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 2.9e-90 335.9 276 64.1
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.8e-90 335.5 278 64.7
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 5.0e-90 335.1 277 65.0
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 5.0e-90 335.1 283 62.5
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 6.6e-90 334.7 278 65.1
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 8.6e-90 334.3 277 64.3
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.1e-89 334.0 278 64.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.5e-89 333.6 277 63.5
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.9e-89 333.2 276 63.0
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 3.3e-89 332.4 277 64.3
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 5.6e-89 331.6 278 63.3
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 5.6e-89 331.6 278 64.0
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 7.3e-89 331.3 272 64.7
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.3e-89 331.3 276 63.4
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 1.2e-88 330.5 275 64.7
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 1.2e-88 330.5 277 63.9
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.6e-88 330.1 277 63.5
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.6e-88 330.1 277 63.5
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.8e-87 326.6 278 62.6
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 2.3e-87 326.2 277 62.5
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 2.3e-87 326.2 275 62.5
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 2.3e-87 326.2 302 58.9
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.2e-86 323.9 278 61.9
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 1.5e-86 323.6 278 63.7
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.4e-86 322.0 320 57.2
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 4.4e-86 322.0 274 65.3
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.3e-85 320.5 276 63.4
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.3e-85 320.5 263 64.6
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 3.7e-85 318.9 322 56.5
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 8.3e-85 317.8 277 59.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 8.3e-85 317.8 273 60.4
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.4e-84 317.0 277 60.6
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.1e-84 315.5 319 55.2
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.4e-84 315.1 262 63.4
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.4e-84 315.1 262 63.4
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 7.0e-84 314.7 278 62.6
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 7.0e-84 314.7 355 52.7
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 7.8e-83 311.2 256 64.8
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 7.8e-83 311.2 319 55.5
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.0e-82 310.8 272 62.5
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 1.0e-82 310.8 277 60.6
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.3e-82 310.5 258 62.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.0e-82 309.3 279 61.6
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 6.6e-82 308.1 271 62.0
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 2.5e-81 306.2 276 59.8
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 2.8e-80 302.8 260 61.5
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 4.7e-80 302.0 261 62.1
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 1.8e-79 300.1 263 60.5
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.3e-79 299.7 278 58.6
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 7.5e-78 294.7 271 60.5
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 8.3e-77 291.2 271 57.9
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.2e-76 289.3 271 59.0
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 7.0e-76 288.1 257 60.3
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.6e-75 287.0 277 56.3
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 1.0e-74 284.3 331 52.0
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.0e-74 284.3 229 63.8
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 5.6e-73 278.5 230 63.0
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.9e-71 271.2 246 59.3
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 8.9e-71 271.2 246 59.3
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.7e-69 266.9 281 52.3
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 2.9e-69 266.2 224 63.8
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 8.3e-69 264.6 222 64.9
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.4e-68 263.8 279 52.3
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 7.8e-67 258.1 223 60.5
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.0e-66 257.7 317 51.4
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-61 239.2 276 50.0
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.1e-60 235.7 276 49.6
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 3.9e-58 229.2 257 51.8
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 8.1e-56 221.5 135 83.7
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 7.6e-54 214.9 130 83.8
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 1.4e-52 210.7 198 55.6
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 3.9e-50 202.6 257 46.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 4.3e-41 172.6 181 51.9
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 4.8e-40 169.1 155 56.1
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 2.4e-39 166.8 107 78.5
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 3.4e-38 162.9 95 86.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.8e-37 159.5 302 35.1
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 3.8e-37 159.5 93 86.0
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 1.0e-34 151.4 130 60.0
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.5e-33 146.7 152 54.6
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 7.4e-33 145.2 146 52.1
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.1e-32 143.7 83 85.5
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 5.7e-25 119.0 78 74.4
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.3e-24 117.9 72 80.6
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.3e-24 117.9 72 80.6
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 6.5e-21 105.5 117 54.7
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 9.3e-20 101.7 68 66.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 6.3e-16 89.0 255 27.5
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 3.1e-15 86.7 155 37.4
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 5.3e-15 85.9 155 37.4
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-14 84.3 151 37.7
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-14 84.3 193 29.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 1.5e-14 84.3 57 70.2
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 3.4e-14 83.2 135 34.8
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 5.0e-13 79.3 185 27.0
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.7e-11 73.6 45 77.8
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 2.7e-11 73.6 153 31.4
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-10 70.9 46 76.1
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.5e-09 67.8 62 56.5
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.5e-09 67.8 76 47.4
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-09 67.4 83 51.8
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 5.7e-09 65.9 40 80.0
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 7.4e-09 65.5 76 44.7
Manes.09G122000 Manihot esculenta HOM05D004172 ORTHO05D006010 6.9e-07 58.9 229 27.1
arahy.Tifrunner.gnm1.ann1.SQ7DBT Arachis hypogaea HOM05D004172 ORTHO05D006010 1.5e-06 57.8 227 27.8
MD04G1177600 Malus domestica HOM05D004172 ORTHO05D006010 1.5e-06 57.8 234 28.2
QL07p031284 Quercus lobata HOM05D004172 ORTHO05D006010 1.5e-06 57.8 237 27.4
arahy.Tifrunner.gnm1.ann1.5JF3JJ Arachis hypogaea HOM05D004172 ORTHO05D006010 2.0e-06 57.4 227 27.3
Glyma.09G271900 Glycine max HOM05D004172 ORTHO05D006010 2.0e-06 57.4 236 27.1
Glyma.18G217100 Glycine max HOM05D004172 ORTHO05D006010 2.0e-06 57.4 236 27.1
arahy.Tifrunner.gnm1.ann1.3N9KBA Arachis hypogaea HOM05D004172 ORTHO05D006010 2.6e-06 57.0 227 27.3
arahy.Tifrunner.gnm1.ann1.VH0VRX Arachis hypogaea HOM05D004172 ORTHO05D006010 2.6e-06 57.0 227 27.3
QL07p031617 Quercus lobata HOM05D004172 ORTHO05D006010 2.6e-06 57.0 237 27.0
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 3.4e-06 56.6 140 29.3
Lalb_Chr01g0023931 Lupinus albus HOM05D004172 ORTHO05D006010 4.5e-06 56.2 227 26.9
Manes.08G168300 Manihot esculenta HOM05D004172 ORTHO05D006010 4.5e-06 56.2 225 27.6
PRCOL_00003523 Prasinoderma coloniale HOM05D004172 ORTHO05D006010 4.5e-06 56.2 244 27.9
Prupe.6G297500 Prunus persica HOM05D004172 ORTHO05D006010 5.9e-06 55.8 225 27.6
Thecc.04G148100 Theobroma cacao HOM05D004172 ORTHO05D006010 5.9e-06 55.8 229 26.6
Aqoxy4G03306 Aquilegia oxysepala HOM05D004172 ORTHO05D006010 7.7e-06 55.5 229 26.2
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.7e-06 55.5 145 26.9
Lj1g0013582 Lotus japonicus HOM05D004172 ORTHO05D006010 7.7e-06 55.5 236 25.4


User provided reference genes

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