Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb213420 Zea mays HOM05D000333 ORTHO05D000190 8.5e-101 370.9 281 100.0
Zm00001eb059970 Zea mays HOM05D000333 ORTHO05D000190 2.6e-41 173.3 203 62.6
Os03g0786400 Oryza sativa ssp. japonica HOM05D000333 ORTHO05D000190 7.3e-36 155.2 240 54.2
Zm00001eb031910 Zea mays HOM05D000333 ORTHO05D000190 4.2e-15 86.3 42 85.7
Os12g0617000 Oryza sativa ssp. japonica HOM05D000333 ORTHO05D000190 1.6e-14 84.3 40 87.5
Zm00001eb300220 Zea mays HOM05D000333 ORTHO05D000190 1.3e-13 81.3 89 57.3
Os07g0153600 Oryza sativa ssp. japonica HOM05D000333 ORTHO05D000190 4.8e-11 72.8 122 42.6
HPP92_012185 Vanilla planifolia HOM05D000333 ORTHO05D000190 4.0e-10 69.7 81 53.1
HPP92_000989 Vanilla planifolia HOM05D000333 ORTHO05D000190 2.6e-09 67.0 104 43.3
COL.COLO4_04694 Corchorus olitorius HOM05D001336 ORTHO05D001211 5.8e-09 65.9 70 51.4
Ciclev10024546m.g Citrus clementina HOM05D000333 ORTHO05D000190 3.8e-08 63.2 67 50.7
Thecc.01G229500 Theobroma cacao HOM05D000333 ORTHO05D000190 3.8e-08 63.2 76 47.4
Psat3g087040 Pisum sativum HOM05D010505 ORTHO05D014594 6.4e-08 62.4 37 70.3
TWI31G1277 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 6.4e-08 62.4 36 72.2
CDE04G0358 Ceratophyllum demersum HOM05D000333 ORTHO05D000190 1.1e-07 61.6 36 69.4
CDE06G2234 Ceratophyllum demersum HOM05D000333 ORTHO05D000190 1.1e-07 61.6 36 69.4
PSO104G0122 Papaver somniferum HOM05D000333 ORTHO05D000190 1.1e-07 61.6 35 74.3
PSO104G0174 Papaver somniferum HOM05D000333 ORTHO05D000190 1.1e-07 61.6 35 74.3
PSO421G0152 Papaver somniferum HOM05D000333 ORTHO05D000190 1.1e-07 61.6 35 74.3
PSO421G0439 Papaver somniferum HOM05D000333 ORTHO05D000190 1.1e-07 61.6 35 74.3
TWI75G0149 Tripterygium wilfordii HOM05D000333 ORTHO05D000190 1.1e-07 61.6 36 72.2
Manes.13G044000 Manihot esculenta HOM05D000333 ORTHO05D000190 1.4e-07 61.2 55 54.5
BcaB04g19591 Brassica carinata HOM05D000333 ORTHO05D000190 1.9e-07 60.8 35 74.3
BcaC04g23757 Brassica carinata HOM05D000333 ORTHO05D000190 1.9e-07 60.8 35 74.3
A09p04670 Brassica napus HOM05D000333 ORTHO05D000190 1.9e-07 60.8 35 74.3
C09p04980 Brassica napus HOM05D000333 ORTHO05D000190 1.9e-07 60.8 35 74.3
BolC9t53427H Brassica oleracea HOM05D000333 ORTHO05D000190 1.9e-07 60.8 35 74.3
BraA09t36103Z Brassica rapa HOM05D000333 ORTHO05D000190 1.9e-07 60.8 35 74.3
Eucgr.H00811 Eucalyptus grandis HOM05D000333 ORTHO05D000190 1.9e-07 60.8 37 73.0
MD10G1169000 Malus domestica HOM05D000333 ORTHO05D000190 1.9e-07 60.8 32 78.1
Manes.12G042600 Manihot esculenta HOM05D000333 ORTHO05D000190 1.9e-07 60.8 35 71.4
Aa31sc98G60 Aethionema arabicum HOM05D000333 ORTHO05D000190 2.4e-07 60.5 36 72.2
FvH4_2g19520 Fragaria vesca HOM05D000333 ORTHO05D000190 2.4e-07 60.5 30 83.3
FAN27G0298 Fragaria x ananassa HOM05D000333 ORTHO05D000190 2.4e-07 60.5 30 83.3
MBI10_g43787_MAGBIO Magnolia biondii HOM05D000333 ORTHO05D000190 2.4e-07 60.5 70 51.4
Nn3g16337 Nelumbo nucifera HOM05D000333 ORTHO05D000190 2.4e-07 60.5 33 72.7
QL09p044528 Quercus lobata HOM05D000333 ORTHO05D000190 2.4e-07 60.5 30 83.3
RcHm_v2.0_Chr6g0285241 Rosa chinensis HOM05D000333 ORTHO05D000190 2.4e-07 60.5 30 83.3
TAR228G0003 Trochodendron aralioides HOM05D001336 ORTHO05D001211 2.4e-07 60.5 36 66.7
AL8G22070 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 3.2e-07 60.1 35 71.4
Gohir.A08G193850 Gossypium hirsutum HOM05D000333 ORTHO05D000190 3.2e-07 60.1 38 68.4
Gohir.D07G207900 Gossypium hirsutum HOM05D000333 ORTHO05D000190 3.2e-07 60.1 69 49.3
PGSC0003DMG400020239 Solanum tuberosum HOM05D000333 ORTHO05D000190 3.2e-07 60.1 47 55.3
TAR633G0837 Trochodendron aralioides HOM05D000333 ORTHO05D000190 3.2e-07 60.1 32 75.0
Carub.0008s0861 Capsella rubella HOM05D000333 ORTHO05D000190 4.2e-07 59.7 35 71.4
CiPaw.04G107300 Carya illinoinensis HOM05D000333 ORTHO05D000190 4.2e-07 59.7 30 80.0
Duzib211G0144 Durio zibethinus HOM05D000333 ORTHO05D000190 4.2e-07 59.7 76 44.7
Glyma.18G174500 Glycine max HOM05D000333 ORTHO05D000190 4.2e-07 59.7 30 80.0
PSO724G0637 Papaver somniferum HOM05D000333 ORTHO05D000190 4.2e-07 59.7 34 67.6
RcHm_v2.0_Chr2g0176231 Rosa chinensis HOM05D000333 ORTHO05D000190 4.2e-07 59.7 58 53.4
Sp2g19280 Schrenkiella parvula HOM05D000333 ORTHO05D000190 4.2e-07 59.7 35 71.4
GSVIVG01028555001 Vitis vinifera HOM05D000333 ORTHO05D000190 4.2e-07 59.7 36 66.7
ATR0582G092 Amborella trichopoda HOM05D000333 ORTHO05D000190 5.5e-07 59.3 41 63.4
AT5G48890 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 5.5e-07 59.3 31 77.4
CARHR182830 Cardamine hirsuta HOM05D000333 ORTHO05D000190 5.5e-07 59.3 34 73.5
Cpa.g.sc8.182 Carica papaya HOM05D000333 ORTHO05D000190 5.5e-07 59.3 30 80.0
CDE02G2338 Ceratophyllum demersum HOM05D000333 ORTHO05D000190 5.5e-07 59.3 42 61.9
CDE06G0163 Ceratophyllum demersum HOM05D000333 ORTHO05D000190 5.5e-07 59.3 42 61.9
Glyma.08G356600 Glycine max HOM05D000333 ORTHO05D000190 5.5e-07 59.3 30 80.0
Gorai.001G234500 Gossypium raimondii HOM05D000333 ORTHO05D000190 5.5e-07 59.3 69 49.3
MD05G1179400 Malus domestica HOM05D000333 ORTHO05D000190 5.5e-07 59.3 30 80.0
Phvul.008G124366 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 5.5e-07 59.3 30 80.0
Prupe.8G206700 Prunus persica HOM05D000333 ORTHO05D000190 5.5e-07 59.3 30 80.0
PGSC0003DMG400015816 Solanum tuberosum HOM05D000333 ORTHO05D000190 5.5e-07 59.3 35 68.6
VMungo1383G2917 Vigna mungo HOM05D000333 ORTHO05D000190 5.5e-07 59.3 30 80.0
BcaC03g17681 Brassica carinata HOM05D000333 ORTHO05D000190 7.1e-07 58.9 30 80.0
C02p56880 Brassica napus HOM05D000333 ORTHO05D000190 7.1e-07 58.9 30 80.0
BolC2t11757H Brassica oleracea HOM05D000333 ORTHO05D000190 7.1e-07 58.9 30 80.0
ClCG07G001730 Citrullus lanatus HOM05D000333 ORTHO05D000190 7.1e-07 58.9 30 80.0
CsaV3_3G028730 Cucumis sativus L. HOM05D000333 ORTHO05D000190 7.1e-07 58.9 30 80.0
Migut.D00516 Erythranthe guttata HOM05D000333 ORTHO05D000190 7.1e-07 58.9 53 52.8
Hma1.2p1_1061F.1_g253270 Hydrangea macrophylla HOM05D000333 ORTHO05D000190 7.1e-07 58.9 76 47.4
SGA_v2.0_scaffold3G01582 Striga asiatica HOM05D000333 ORTHO05D000190 7.1e-07 58.9 35 74.3
Atru.chr5.1981 Acer truncatum HOM05D000333 ORTHO05D000190 9.3e-07 58.5 30 76.7
BcaC06g30727 Brassica carinata HOM05D000333 ORTHO05D000190 9.3e-07 58.5 36 66.7
CANSAT01G2448 Cannabis sativa HOM05D000333 ORTHO05D000190 9.3e-07 58.5 66 47.0
Duzib138G0749 Durio zibethinus HOM05D000333 ORTHO05D000190 9.3e-07 58.5 71 46.5
PGR083G1763 Punica granatum HOM05D000333 ORTHO05D000190 9.3e-07 58.5 30 80.0
SGA_v2.0_scaffold253G45160 Striga asiatica HOM05D000333 ORTHO05D000190 9.3e-07 58.5 90 45.6
HPP92_026837 Vanilla planifolia HOM05D000333 ORTHO05D000190 9.3e-07 58.5 97 48.5
ATR0105G003 Amborella trichopoda HOM05D000333 ORTHO05D000190 1.2e-06 58.2 29 75.9
arahy.Tifrunner.gnm1.ann1.T9ECGJ Arachis hypogaea HOM05D000333 ORTHO05D000190 1.2e-06 58.2 35 68.6
Gohir.D08G211650 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.2e-06 58.2 35 68.6
Gorai.004G224900 Gossypium raimondii HOM05D000333 ORTHO05D000190 1.2e-06 58.2 35 68.6
Sc24g0003590 Simmondsia chinensis HOM05D000333 ORTHO05D000190 1.2e-06 58.2 29 79.3
Thecc.01G209600 Theobroma cacao HOM05D000333 ORTHO05D000190 1.2e-06 58.2 71 43.7
HPP92_014008 Vanilla planifolia HOM05D002378 ORTHO05D002936 1.2e-06 58.2 97 48.5
Aqoxy2G03794 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 1.6e-06 57.8 126 36.5
Aqoxy7G03484 Aquilegia oxysepala HOM05D000333 ORTHO05D000190 1.6e-06 57.8 75 42.7
EL10Ac7g17799 Beta vulgaris HOM05D000333 ORTHO05D000190 1.6e-06 57.8 29 79.3
Gohir.A07G201600 Gossypium hirsutum HOM05D000333 ORTHO05D000190 1.6e-06 57.8 69 47.8
PSO729G0083 Papaver somniferum HOM05D000333 ORTHO05D000190 1.6e-06 57.8 35 68.6
Sed0006952 Sechium edule HOM05D000333 ORTHO05D000190 1.6e-06 57.8 64 51.6
Actinidia37579 Actinidia chinensis HOM05D001336 ORTHO05D001211 2.1e-06 57.4 30 80.0
DCAR_018549 Daucus carota HOM05D000333 ORTHO05D000190 2.1e-06 57.4 30 80.0
Thhalv10005585m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 2.1e-06 57.4 30 76.7
Gohir.A05G057800 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.1e-06 57.4 63 46.0
Gohir.D05G059800 Gossypium hirsutum HOM05D000333 ORTHO05D000190 2.1e-06 57.4 63 46.0
Gorai.009G060900 Gossypium raimondii HOM05D000333 ORTHO05D000190 2.1e-06 57.4 63 46.0
Lj9P495T27 Lonicera japonica HOM05D000333 ORTHO05D000190 2.1e-06 57.4 38 60.5
MD15G1037200 Malus domestica HOM05D000333 ORTHO05D000190 2.1e-06 57.4 36 61.1
SalBow6G4131 Salvia bowleyana HOM05D000333 ORTHO05D000190 2.1e-06 57.4 40 55.0
SalBow6G6187 Salvia bowleyana HOM05D000333 ORTHO05D000190 2.1e-06 57.4 40 55.0
Sed0004484 Sechium edule HOM05D000333 ORTHO05D000190 2.1e-06 57.4 30 76.7
THA.LOC104818940 Tarenaya hassleriana HOM05D000333 ORTHO05D000190 2.1e-06 57.4 35 68.6
vmacro02742 Vaccinium macrocarpon HOM05D000333 ORTHO05D000190 2.1e-06 57.4 30 80.0
MSTRG.4688 Avicennia marina HOM05D000333 ORTHO05D000190 2.7e-06 57.0 36 61.1
BcaC06g30748 Brassica carinata HOM05D000333 ORTHO05D000190 2.7e-06 57.0 35 68.6
A06p38830 Brassica napus HOM05D000333 ORTHO05D000190 2.7e-06 57.0 35 68.6
BolC7t44468H Brassica oleracea HOM05D000333 ORTHO05D000190 2.7e-06 57.0 35 68.6
BraA06t26799Z Brassica rapa HOM05D000333 ORTHO05D000190 2.7e-06 57.0 35 68.6
Carub.0002s2682 Capsella rubella HOM05D000333 ORTHO05D000190 2.7e-06 57.0 51 47.1
AUR62008883 Chenopodium quinoa HOM05D000333 ORTHO05D000190 2.7e-06 57.0 29 75.9
AUR62031825 Chenopodium quinoa HOM05D000333 ORTHO05D000190 2.7e-06 57.0 29 75.9
Rhsim08G0020100 Rhododendron simsii HOM05D000333 ORTHO05D000190 2.7e-06 57.0 31 71.0
CAN.G546.50 Capsicum annuum HOM05D000333 ORTHO05D000190 3.5e-06 56.6 32 71.9
DCAR_009914 Daucus carota HOM05D000333 ORTHO05D000190 3.5e-06 56.6 33 66.7
Migut.F00027 Erythranthe guttata HOM05D000333 ORTHO05D000190 3.5e-06 56.6 30 76.7
Glyma.04G062600 Glycine max HOM05D000333 ORTHO05D000190 3.5e-06 56.6 35 65.7
Glyma.17G216800 Glycine max HOM05D000333 ORTHO05D000190 3.5e-06 56.6 36 63.9
Nitab4.5_0000486g0080 Nicotiana tabacum HOM05D000333 ORTHO05D000190 3.5e-06 56.6 36 61.1
Nitab4.5_0002973g0010 Nicotiana tabacum HOM05D000333 ORTHO05D000190 3.5e-06 56.6 36 61.1
Oeu017349.1 Olea europaea HOM05D000333 ORTHO05D000190 3.5e-06 56.6 30 76.7
PSO135G0033 Papaver somniferum HOM05D000333 ORTHO05D000190 3.5e-06 56.6 34 64.7
Phvul.001G046500 Phaseolus vulgaris HOM05D000333 ORTHO05D000190 3.5e-06 56.6 36 63.9
Prupe.1G391200 Prunus persica HOM05D000333 ORTHO05D000190 3.5e-06 56.6 36 61.1
SalBow3G2831 Salvia bowleyana HOM05D000333 ORTHO05D000190 3.5e-06 56.6 31 74.2
Sc16g0004290 Simmondsia chinensis HOM05D000333 ORTHO05D000190 3.5e-06 56.6 44 56.8
Sopen09g024930 Solanum pennellii HOM05D000333 ORTHO05D000190 3.5e-06 56.6 32 71.9
VMungo0647G0683 Vigna mungo HOM05D000333 ORTHO05D000190 3.5e-06 56.6 36 63.9
ATR0184G011 Amborella trichopoda HOM05D000333 ORTHO05D000190 4.6e-06 56.2 34 61.8
ATR0787G074 Amborella trichopoda HOM05D000333 ORTHO05D000190 4.6e-06 56.2 69 49.3
MSTRG.22787 Avicennia marina HOM05D000333 ORTHO05D000190 4.6e-06 56.2 31 74.2
Cc07_g13080 Coffea canephora HOM05D000333 ORTHO05D000190 4.6e-06 56.2 31 71.0
Manes.08G161500 Manihot esculenta HOM05D000333 ORTHO05D000190 4.6e-06 56.2 31 74.2
SMO356G0105 Selaginella moellendorffii HOM05D002136 ORTHO05D002145 4.6e-06 56.2 40 60.0
SEGI_37376 Sequoiadendron giganteum HOM05D000333 ORTHO05D000190 4.6e-06 56.2 63 46.0
VMungo1309G1263 Vigna mungo HOM05D000333 ORTHO05D000190 4.6e-06 56.2 58 48.3
MSTRG.18377 Avicennia marina HOM05D000333 ORTHO05D000190 6.0e-06 55.8 30 76.7
EL10Ac9g22224 Beta vulgaris HOM05D000333 ORTHO05D000190 6.0e-06 55.8 36 58.3
BcaC08g47549 Brassica carinata HOM05D000333 ORTHO05D000190 6.0e-06 55.8 41 53.7
A07p44960 Brassica napus HOM05D000333 ORTHO05D000190 6.0e-06 55.8 41 53.7
C06p53730 Brassica napus HOM05D000333 ORTHO05D000190 6.0e-06 55.8 41 53.7
BolC6t40392H Brassica oleracea HOM05D000333 ORTHO05D000190 6.0e-06 55.8 41 53.7
BraA07t32001Z Brassica rapa HOM05D000333 ORTHO05D000190 6.0e-06 55.8 41 53.7
Ca_11231_v3 Cicer arietinum L. HOM05D000333 ORTHO05D000190 6.0e-06 55.8 34 64.7
ClCG05G013960 Citrullus lanatus HOM05D000333 ORTHO05D000190 6.0e-06 55.8 30 73.3
COL.COLO4_06932 Corchorus olitorius HOM05D000333 ORTHO05D000190 6.0e-06 55.8 30 76.7
MELO3C014938.2 Cucumis melo HOM05D000333 ORTHO05D000190 6.0e-06 55.8 30 73.3
MELO3C019567.2 Cucumis melo HOM05D000333 ORTHO05D000190 6.0e-06 55.8 40 57.5
CsaV3_3G018010 Cucumis sativus L. HOM05D000333 ORTHO05D000190 6.0e-06 55.8 40 57.5
CsaV3_3G026470 Cucumis sativus L. HOM05D000333 ORTHO05D000190 6.0e-06 55.8 30 73.3
ECA232G2557 Erigeron canadensis HOM05D000333 ORTHO05D000190 6.0e-06 55.8 44 61.4
Glyma.14G110900 Glycine max HOM05D000333 ORTHO05D000190 6.0e-06 55.8 36 63.9
Lsat_1_v5_gn_5_179601 Lactuca sativa HOM05D000333 ORTHO05D000190 6.0e-06 55.8 31 71.0
Lj5P215T36 Lonicera japonica HOM05D000333 ORTHO05D000190 6.0e-06 55.8 34 64.7
Lalb_Chr18g0053571 Lupinus albus HOM05D000333 ORTHO05D000190 6.0e-06 55.8 30 73.3
Nitab4.5_0002172g0030 Nicotiana tabacum HOM05D000333 ORTHO05D000190 6.0e-06 55.8 40 57.5
Oeu015459.1 Olea europaea HOM05D000333 ORTHO05D000190 6.0e-06 55.8 32 68.8
Peaxi162Scf00992g00033 Petunia axillaris HOM05D000333 ORTHO05D000190 6.0e-06 55.8 55 49.1
Psat3g088000 Pisum sativum HOM05D010505 ORTHO05D014594 6.0e-06 55.8 31 74.2
Prupe.3G311100 Prunus persica HOM05D000333 ORTHO05D000190 6.0e-06 55.8 40 57.5
Rhsim01G0257900 Rhododendron simsii HOM05D000333 ORTHO05D000190 6.0e-06 55.8 29 79.3
Rhsim08G0040200 Rhododendron simsii HOM05D000333 ORTHO05D000190 6.0e-06 55.8 59 45.8
Actinidia35719 Actinidia chinensis HOM05D000333 ORTHO05D000190 7.9e-06 55.5 31 67.7
AL2G40690 Arabidopsis lyrata HOM05D000333 ORTHO05D000190 7.9e-06 55.5 51 47.1
AT1G80730 Arabidopsis thaliana HOM05D000333 ORTHO05D000190 7.9e-06 55.5 51 47.1
MSTRG.9408 Avicennia marina HOM05D000333 ORTHO05D000190 7.9e-06 55.5 31 74.2
A02p37780 Brassica napus HOM05D000333 ORTHO05D000190 7.9e-06 55.5 30 76.7
BraA02t08761Z Brassica rapa HOM05D000333 ORTHO05D000190 7.9e-06 55.5 30 76.7
CANSAT35G0954 Cannabis sativa HOM05D003047 ORTHO05D000627 7.9e-06 55.5 39 61.5
CARHR073760 Cardamine hirsuta HOM05D000333 ORTHO05D000190 7.9e-06 55.5 41 53.7
Ca_08700_v3 Cicer arietinum L. HOM05D010505 ORTHO05D014594 7.9e-06 55.5 31 74.2
Thhalv10019848m.g Eutrema salsugineum HOM05D000333 ORTHO05D000190 7.9e-06 55.5 41 53.7
FAN06G4863 Fragaria x ananassa HOM05D000333 ORTHO05D000190 7.9e-06 55.5 34 64.7
Glyma.06G063700 Glycine max HOM05D000333 ORTHO05D000190 7.9e-06 55.5 35 62.9
MD17G1262500 Malus domestica HOM05D000333 ORTHO05D000190 7.9e-06 55.5 31 74.2
Nitab4.5_0000574g0140 Nicotiana tabacum HOM05D000333 ORTHO05D000190 7.9e-06 55.5 31 71.0
Psat3g080800 Pisum sativum HOM05D010505 ORTHO05D014594 7.9e-06 55.5 30 80.0
Sabra14G0136500 Salix brachista HOM05D000333 ORTHO05D000190 7.9e-06 55.5 30 73.3
Sed0026068 Sechium edule HOM05D000333 ORTHO05D000190 7.9e-06 55.5 30 73.3
HPP92_010435 Vanilla planifolia HOM05D000333 ORTHO05D000190 7.9e-06 55.5 31 71.0


User provided reference genes

Program Settings