Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 1.1e-107 393.3 195 100.0
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.3e-68 263.5 200 66.5
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 5.0e-60 235.0 150 72.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 6.6e-60 234.6 146 75.3
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 8.6e-60 234.2 152 73.0
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 1.5e-59 233.4 150 72.0
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 2.5e-59 232.6 150 72.0
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 3.3e-59 232.3 145 73.1
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 3.3e-59 232.3 150 72.0
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 5.6e-59 231.5 145 75.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 5.6e-59 231.5 147 74.1
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 7.3e-59 231.1 145 71.7
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.2e-58 230.3 140 75.7
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-58 230.3 140 75.0
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.2e-58 230.3 140 75.0
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.2e-58 230.3 182 67.6
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 1.6e-58 229.9 138 74.6
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 2.1e-58 229.6 148 70.9
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 2.1e-58 229.6 150 70.7
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 2.8e-58 229.2 179 65.4
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 4.7e-58 228.4 138 74.6
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 4.7e-58 228.4 145 73.1
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 8.0e-58 227.6 140 75.0
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 8.0e-58 227.6 177 66.1
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.1e-57 227.3 147 72.1
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 1.1e-57 227.3 145 72.4
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.4e-57 226.9 140 75.0
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.4e-57 226.9 140 75.0
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 1.4e-57 226.9 151 69.5
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.4e-57 226.9 140 73.6
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 1.8e-57 226.5 140 73.6
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.8e-57 226.5 159 67.9
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 1.8e-57 226.5 159 67.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.8e-57 226.5 151 69.5
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.3e-57 226.1 153 69.3
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 4.0e-57 225.3 148 75.0
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 5.2e-57 224.9 155 68.4
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 6.8e-57 224.6 148 75.0
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 6.8e-57 224.6 159 69.2
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.8e-57 224.6 140 74.3
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 6.8e-57 224.6 140 74.3
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 6.8e-57 224.6 159 67.3
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 6.8e-57 224.6 144 75.0
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 6.8e-57 224.6 150 70.0
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 1.2e-56 223.8 147 71.4
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 1.2e-56 223.8 179 64.2
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 1.2e-56 223.8 153 67.3
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.2e-56 223.8 152 69.7
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.2e-56 223.8 140 74.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.0e-56 223.0 140 72.9
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.0e-56 223.0 160 66.9
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 2.6e-56 222.6 147 71.4
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 2.6e-56 222.6 147 71.4
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 2.6e-56 222.6 147 71.4
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.6e-56 222.6 140 73.6
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 3.4e-56 222.2 147 71.4
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.4e-56 222.2 145 68.3
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.4e-56 221.9 148 68.9
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 4.4e-56 221.9 155 67.1
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.4e-56 221.9 140 70.7
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.4e-56 221.9 145 69.7
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.8e-56 221.5 176 64.2
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 5.8e-56 221.5 141 74.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 5.8e-56 221.5 135 77.8
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 7.5e-56 221.1 140 72.1
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 9.8e-56 220.7 131 76.3
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 9.8e-56 220.7 140 72.9
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 1.3e-55 220.3 147 73.5
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 1.3e-55 220.3 147 73.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 1.3e-55 220.3 151 68.2
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.3e-55 220.3 154 66.2
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.7e-55 219.9 147 70.7
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.2e-55 219.5 146 70.5
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 2.9e-55 219.2 142 71.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.9e-55 219.2 161 66.5
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 3.7e-55 218.8 135 73.3
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 3.7e-55 218.8 149 69.1
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 6.4e-55 218.0 178 63.5
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.1e-54 217.2 131 73.3
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 1.1e-54 217.2 148 69.6
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 1.4e-54 216.9 159 69.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.9e-54 216.5 142 70.4
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.4e-54 216.1 140 71.4
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 3.2e-54 215.7 144 68.8
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 3.2e-54 215.7 140 70.7
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 3.2e-54 215.7 146 67.8
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 4.1e-54 215.3 141 71.6
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 4.1e-54 215.3 133 72.9
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 4.1e-54 215.3 143 69.2
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 5.4e-54 214.9 152 65.1
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 9.2e-54 214.2 185 58.4
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 1.2e-53 213.8 140 70.7
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-53 213.4 170 65.3
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.6e-53 213.4 146 67.8
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.0e-53 213.0 161 65.2
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 2.0e-53 213.0 155 61.9
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 2.7e-53 212.6 159 67.9
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.5e-53 212.2 140 69.3
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 4.6e-53 211.8 155 66.5
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.0e-53 211.5 141 68.8
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.0e-53 211.5 141 68.8
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 6.0e-53 211.5 142 68.3
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 1.3e-52 210.3 138 68.8
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.3e-52 210.3 165 61.8
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 3.9e-52 208.8 144 69.4
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 5.0e-52 208.4 133 69.2
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 6.6e-52 208.0 149 65.1
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 8.6e-52 207.6 191 53.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 2.5e-51 206.1 158 62.7
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 2.5e-51 206.1 133 71.4
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.6e-51 204.9 144 68.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 5.6e-51 204.9 134 70.1
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 5.6e-51 204.9 152 65.8
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 5.6e-51 204.9 185 54.6
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 7.3e-51 204.5 130 71.5
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.5e-51 204.1 210 53.3
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.2e-50 203.8 135 66.7
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 1.2e-50 203.8 149 65.1
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.1e-50 203.0 116 79.3
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 3.6e-50 202.2 128 72.7
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 4.7e-50 201.8 151 62.3
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-49 200.7 152 60.5
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 1.8e-49 199.9 134 68.7
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.1e-49 199.1 140 65.0
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 2.0e-48 196.4 224 52.2
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 4.4e-48 195.3 135 63.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 4.4e-48 195.3 135 63.0
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 7.5e-48 194.5 144 62.5
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 7.5e-48 194.5 135 62.2
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 9.9e-48 194.1 163 58.9
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.2e-47 193.0 156 55.8
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 4.9e-47 191.8 146 58.2
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.4e-47 191.4 156 55.1
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 8.3e-47 191.0 137 63.5
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 4.1e-46 188.7 171 56.1
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 5.4e-46 188.3 157 58.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 2.1e-45 186.4 126 67.5
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.5e-45 185.7 153 61.4
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.5e-45 185.7 137 61.3
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.0e-44 182.6 125 65.6
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 3.0e-44 182.6 125 65.6
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 6.6e-44 181.4 166 55.4
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 6.6e-44 181.4 199 50.3
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 1.1e-43 180.6 177 52.5
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.6e-42 176.8 128 61.7
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 3.6e-42 175.6 122 66.4
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 2.4e-41 172.9 135 61.5
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 5.2e-41 171.8 135 60.0
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 6.8e-41 171.4 128 60.2
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.2e-40 170.6 124 62.9
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 9.9e-40 167.5 135 58.5
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.9e-40 167.5 140 59.3
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.7e-39 166.8 134 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 4.9e-39 165.2 160 50.6
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 1.1e-38 164.1 141 59.6
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.4e-38 163.7 141 56.7
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.1e-38 162.2 134 56.7
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 5.4e-38 161.8 134 56.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.7e-36 156.8 145 52.4
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 1.7e-36 156.8 112 65.2
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.9e-36 155.6 151 55.6
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 8.6e-36 154.5 146 54.1
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 1.9e-35 153.3 106 64.2
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 7.3e-35 151.4 147 53.7
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 1.6e-34 150.2 142 53.5
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 4.0e-33 145.6 139 49.6
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-31 140.6 151 51.0
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 2.9e-31 139.4 82 75.6
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 2.4e-30 136.3 138 58.0
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.7e-29 132.9 88 70.5
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 1.7e-28 130.2 154 52.6
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 1.7e-28 130.2 154 52.6
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 2.5e-27 126.3 193 42.0
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 9.6e-27 124.4 82 69.5
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 3.4e-24 115.9 63 84.1
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 4.9e-23 112.1 63 81.0
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 9.6e-19 97.8 54 79.6
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 1.8e-17 93.6 52 82.7
Lj6g0012328 Lotus japonicus HOM05D007052 ORTHO05D008871 9.3e-06 54.7 136 32.4


User provided reference genes

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