Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.8e-269 932.2 543 100.0
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 6.8e-248 860.5 544 90.1
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 3.5e-212 741.9 543 82.0
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 2.2e-97 360.5 535 46.5
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 3.2e-96 356.7 572 44.6
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.8e-91 340.9 550 44.0
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 5.3e-91 339.3 539 44.3
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 5.3e-91 339.3 543 43.5
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 6.9e-91 339.0 532 44.0
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 2.6e-90 337.0 538 45.2
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 3.4e-90 336.7 546 44.5
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 1.3e-89 334.7 543 40.3
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 2.2e-89 334.0 568 41.9
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 6.5e-89 332.4 545 44.2
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 1.9e-88 330.9 525 47.2
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 4.2e-88 329.7 542 43.4
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 1.2e-87 328.2 545 42.8
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 3.5e-87 326.6 550 45.1
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 3.5e-87 326.6 532 42.7
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 4.6e-87 326.2 539 42.9
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 4.6e-87 326.2 537 43.4
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 6.0e-87 325.9 536 39.7
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 1.3e-86 324.7 560 43.9
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.3e-86 323.9 559 43.1
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 5.1e-86 322.8 532 40.0
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 6.7e-86 322.4 570 42.1
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 8.7e-86 322.0 517 45.3
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 1.1e-85 321.6 558 41.4
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 1.1e-85 321.6 529 44.4
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 1.5e-85 321.2 555 37.3
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 1.9e-85 320.9 547 45.5
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 1.9e-85 320.9 558 41.6
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 2.5e-85 320.5 531 44.3
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 1.3e-84 318.2 524 42.7
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 1.6e-84 317.8 548 38.0
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 1.6e-84 317.8 544 44.3
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 1.6e-84 317.8 572 40.4
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 2.8e-84 317.0 557 36.8
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 4.8e-84 316.2 526 43.3
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 6.3e-84 315.8 544 41.5
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 1.4e-83 314.7 553 38.2
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 1.8e-83 314.3 536 41.4
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 4.1e-83 313.2 531 42.4
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 9.0e-83 312.0 534 39.9
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 1.2e-82 311.6 560 38.4
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.5e-82 311.2 531 42.2
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 1.5e-82 311.2 529 44.0
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 1.5e-82 311.2 547 40.2
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 3.4e-82 310.1 543 42.9
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 5.9e-82 309.3 545 41.5
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 5.9e-82 309.3 456 44.7
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 7.6e-82 308.9 546 43.2
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 1.0e-81 308.5 532 42.5
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 1.3e-81 308.1 543 39.6
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 1.7e-81 307.8 519 42.2
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 2.9e-81 307.0 537 41.2
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 2.9e-81 307.0 543 38.3
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.8e-81 306.6 554 41.9
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 5.0e-81 306.2 567 37.4
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 6.5e-81 305.8 544 38.1
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 6.5e-81 305.8 546 40.1
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 1.2e-79 301.6 559 41.7
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 2.7e-79 300.4 518 39.6
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 7.9e-79 298.9 518 44.6
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 1.0e-78 298.5 545 40.9
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 2.3e-78 297.4 547 42.0
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 2.3e-78 297.4 470 45.1
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 5.1e-78 296.2 514 40.3
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 3.3e-77 293.5 534 41.2
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 4.3e-77 293.1 532 41.4
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.3e-76 291.6 541 36.4
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 3.7e-76 290.0 516 42.4
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 6.9e-75 285.8 588 41.5
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 1.3e-73 281.6 548 40.3
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 1.7e-73 281.2 480 38.3
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 8.5e-73 278.9 473 42.5
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.9e-72 277.7 536 38.8
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 1.6e-71 274.6 553 42.5
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 3.6e-71 273.5 562 40.6
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 6.1e-71 272.7 525 42.9
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.1e-69 268.5 558 41.8
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 2.2e-68 264.2 544 37.3
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 6.3e-68 262.7 533 42.4
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.3e-65 255.0 549 37.5
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.3e-65 255.0 535 35.5
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 6.5e-65 252.7 527 34.9
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 1.9e-64 251.1 528 37.1
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 2.5e-64 250.8 531 39.5
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 2.5e-64 250.8 321 42.7
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 8.8e-62 242.3 487 38.6
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 2.6e-61 240.7 298 43.3
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 4.4e-61 240.0 531 37.1
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 5.7e-61 239.6 431 35.3
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 2.2e-60 237.7 308 42.5
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 6.3e-60 236.1 327 41.6
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 2.6e-58 230.7 533 35.5
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 7.7e-58 229.2 487 34.3
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.3e-57 228.4 537 32.8
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 1.5e-56 224.9 258 44.6
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 6.7e-54 216.1 519 33.3
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 2.0e-53 214.5 261 42.1
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 2.2e-52 211.1 233 47.6
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.1e-51 208.8 270 42.2
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 4.1e-51 206.8 560 36.1
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 5.9e-50 203.0 205 51.2
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 2.2e-49 201.1 243 45.7
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 8.5e-49 199.1 543 37.4
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 2.5e-48 197.6 459 34.0
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.2e-48 197.2 296 39.9
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 9.8e-45 185.7 483 32.1
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 8.3e-44 182.6 575 33.7
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.9e-42 176.4 232 44.0
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.5e-40 171.0 478 28.7
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.8e-38 164.9 173 49.1
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 2.3e-38 164.5 364 42.0
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.4e-35 153.3 381 33.9
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 5.4e-35 153.3 178 45.5
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 5.6e-32 143.3 183 44.3
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 3.6e-31 140.6 243 35.4
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.8e-30 138.3 154 48.1
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 1.4e-27 128.6 142 52.1
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.0e-26 124.8 169 36.1
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.5e-26 124.0 385 38.2
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.7e-25 121.7 311 27.7
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 2.5e-24 117.9 118 50.0
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 7.3e-24 116.3 138 48.6
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 3.6e-23 114.0 122 44.3
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 4.4e-21 107.1 139 42.4
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 5.8e-21 106.7 260 28.8
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.2e-20 104.8 340 35.3
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 4.1e-19 100.5 137 42.3
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 9.2e-19 99.4 135 44.4
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.7e-18 97.8 140 41.4
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.3e-17 95.5 108 50.9
Lj3A151T24 Lonicera japonica HOM05D003570 ORTHO05D004207 1.7e-17 95.1 134 43.3
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 5.0e-17 93.6 118 43.2
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 5.0e-17 93.6 318 26.4
BolC5t29767H Brassica oleracea HOM05D003570 ORTHO05D004207 7.3e-16 89.7 192 29.7
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 3.6e-15 87.4 79 46.8
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 6.2e-15 86.7 183 32.8
TAR374G0522 Trochodendron aralioides HOM05D003570 ORTHO05D004207 4.0e-14 84.0 92 48.9
vmacro16172 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 4.0e-14 84.0 200 32.5
BcaC05g25084 Brassica carinata HOM05D003570 ORTHO05D004207 1.5e-13 82.0 201 32.3
unitig_22.g6425 Utricularia gibba HOM05D003570 ORTHO05D004207 2.0e-13 81.6 138 37.7
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 2.2e-12 78.2 78 50.0
TAR374G0931 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.4e-11 75.5 110 40.9
Sp2g10400 Schrenkiella parvula HOM05D003570 ORTHO05D004207 4.1e-11 73.9 122 36.1
AT4G05523 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 4.6e-10 70.5 111 35.1
CSS0031984 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 1.0e-09 69.3 88 44.3
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 1.0e-09 69.3 74 52.7
BcaC05g25085 Brassica carinata HOM05D003570 ORTHO05D004207 1.3e-09 68.9 122 37.7
Actinidia15111 Actinidia chinensis HOM05D003570 ORTHO05D004207 8.6e-09 66.2 69 47.8
BolC4t26878H Brassica oleracea HOM05D003570 ORTHO05D004207 3.3e-08 64.3 105 36.2
CARHR253470 Cardamine hirsuta HOM05D003570 ORTHO05D004207 9.5e-08 62.8 147 31.3
PSO063G3896 Papaver somniferum HOM05D003570 ORTHO05D004207 1.2e-07 62.4 109 37.6
EL10Ac1g01653 Beta vulgaris HOM05D003570 ORTHO05D004207 1.6e-07 62.0 49 57.1
BcaC06g34341 Brassica carinata HOM05D003570 ORTHO05D004207 4.7e-07 60.5 90 35.6
C05p10220 Brassica napus HOM05D003570 ORTHO05D004207 6.2e-07 60.1 113 28.3
MD05G1151500 Malus domestica HOM05D003570 ORTHO05D004207 1.8e-06 58.5 49 57.1
Zm00001eb420260 Zea mays HOM05D002305 ORTHO05D000385 2.3e-06 58.2 48 91.7
Actinidia15112 Actinidia chinensis HOM05D003570 ORTHO05D004207 8.9e-06 56.2 88 35.2
Zm00001eb132600 Zea mays HOM05D002305 ORTHO05D000385 8.9e-06 56.2 48 89.6


User provided reference genes

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