Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.3e-125 453.0 223 100.0
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 1.6e-46 190.3 93 98.9
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.0e-24 117.9 94 72.3
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 6.4e-19 98.6 100 59.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 9.3e-18 94.7 112 50.9
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.5e-17 92.8 78 57.7
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 3.5e-17 92.8 78 57.7
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 3.5e-17 92.8 81 59.3
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 4.6e-17 92.4 80 57.5
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 4.6e-17 92.4 81 59.3
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 1.3e-16 90.9 87 55.2
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 1.3e-16 90.9 81 58.0
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 2.3e-16 90.1 79 55.7
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 3.9e-16 89.4 79 59.5
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 8.7e-16 88.2 78 59.0
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.1e-15 87.8 80 56.2
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 1.1e-15 87.8 89 52.8
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 1.1e-15 87.8 80 56.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 1.5e-15 87.4 79 57.0
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.9e-15 87.0 83 59.0
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 1.9e-15 87.0 87 52.9
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.9e-15 87.0 80 56.2
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 2.5e-15 86.7 83 57.8
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 2.5e-15 86.7 80 53.8
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 3.3e-15 86.3 80 56.2
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 3.3e-15 86.3 82 53.7
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.3e-15 86.3 90 48.9
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 5.6e-15 85.5 90 51.1
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 5.6e-15 85.5 79 53.2
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 5.6e-15 85.5 83 55.4
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 5.6e-15 85.5 85 54.1
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 7.4e-15 85.1 93 47.3
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 9.6e-15 84.7 90 48.9
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 9.6e-15 84.7 90 48.9
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 9.6e-15 84.7 87 51.7
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 9.6e-15 84.7 90 48.9
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 9.6e-15 84.7 80 55.0
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 1.3e-14 84.3 92 50.0
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 1.3e-14 84.3 78 52.6
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-14 84.0 86 54.7
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 1.6e-14 84.0 86 54.7
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 1.6e-14 84.0 86 54.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 1.6e-14 84.0 80 51.2
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 2.1e-14 83.6 80 55.0
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.1e-14 83.6 90 50.0
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.1e-14 83.6 91 47.3
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.1e-14 83.6 80 56.2
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.8e-14 83.2 90 48.9
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 2.8e-14 83.2 90 50.0
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 2.8e-14 83.2 80 53.8
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.8e-14 83.2 80 55.0
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 3.7e-14 82.8 93 47.3
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 3.7e-14 82.8 79 54.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 3.7e-14 82.8 80 53.8
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 4.8e-14 82.4 91 48.4
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 4.8e-14 82.4 82 53.7
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 6.2e-14 82.0 79 55.7
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 6.2e-14 82.0 81 54.3
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 6.2e-14 82.0 125 42.4
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 6.2e-14 82.0 79 51.9
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 8.1e-14 81.6 87 50.6
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 1.1e-13 81.3 80 51.2
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.4e-13 80.9 95 48.4
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.8e-13 80.5 88 51.1
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 1.8e-13 80.5 81 54.3
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 2.4e-13 80.1 91 47.3
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 2.4e-13 80.1 91 46.2
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 2.4e-13 80.1 91 46.2
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 2.4e-13 80.1 91 46.2
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 2.4e-13 80.1 91 46.2
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 2.4e-13 80.1 91 46.2
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 2.4e-13 80.1 80 51.2
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 3.1e-13 79.7 86 51.2
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 3.1e-13 79.7 78 55.1
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 3.1e-13 79.7 80 53.8
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 3.1e-13 79.7 80 53.8
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 3.1e-13 79.7 82 53.7
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 3.1e-13 79.7 80 55.0
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 3.1e-13 79.7 80 55.0
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 3.1e-13 79.7 80 55.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 4.0e-13 79.3 78 53.8
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 4.0e-13 79.3 95 47.4
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 4.0e-13 79.3 79 51.9
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 4.0e-13 79.3 87 48.3
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 5.3e-13 79.0 86 51.2
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 5.3e-13 79.0 80 50.0
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 6.9e-13 78.6 79 51.9
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 6.9e-13 78.6 89 51.7
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 9.0e-13 78.2 83 51.8
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 9.0e-13 78.2 78 51.3
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 9.0e-13 78.2 78 51.3
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.2e-12 77.8 78 53.8
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 1.2e-12 77.8 88 51.1
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.5e-12 77.4 86 51.2
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 1.5e-12 77.4 80 53.8
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.5e-12 77.4 82 52.4
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 1.5e-12 77.4 83 54.2
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-12 77.4 83 54.2
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.5e-12 77.4 83 54.2
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.5e-12 77.4 94 44.7
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 2.0e-12 77.0 85 52.9
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.0e-12 77.0 80 55.0
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 2.0e-12 77.0 80 55.0
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 2.0e-12 77.0 91 46.2
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 2.0e-12 77.0 80 51.2
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 3.4e-12 76.3 82 47.6
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 4.5e-12 75.9 78 50.0
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 4.5e-12 75.9 87 48.3
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 4.5e-12 75.9 87 50.6
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 5.8e-12 75.5 82 46.3
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 5.8e-12 75.5 82 46.3
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 5.8e-12 75.5 82 46.3
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 5.8e-12 75.5 82 51.2
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 5.8e-12 75.5 87 50.6
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.0e-11 74.7 81 48.1
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 1.3e-11 74.3 78 50.0
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 1.3e-11 74.3 78 50.0
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.9e-11 73.2 75 48.0
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 3.8e-11 72.8 84 48.8
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 8.4e-11 71.6 84 48.8
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.1e-10 71.2 92 43.5
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.9e-10 70.5 79 55.7
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 2.5e-10 70.1 93 45.2
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.5e-10 70.1 81 46.9
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 3.2e-10 69.7 46 65.2
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 5.5e-10 68.9 82 50.0
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 9.3e-10 68.2 53 56.6
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 1.2e-09 67.8 45 64.4
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.1e-09 67.0 60 53.3
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 1.0e-08 64.7 43 67.4
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.8e-08 63.9 79 54.4
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 2.3e-08 63.5 46 58.7
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.0e-08 63.2 77 45.5
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 3.0e-08 63.2 71 45.1
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.1e-07 61.2 72 43.1
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.5e-07 60.1 61 57.4
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 3.3e-07 59.7 40 65.0
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 1.3e-06 57.8 54 46.3
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 3.7e-06 56.2 44 54.5


User provided reference genes

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