Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb210880 Zea mays HOM05D002002 ORTHO05D003658 3.0e-123 445.7 315 100.0
Zm00001eb064330 Zea mays HOM05D002002 ORTHO05D003658 3.8e-73 279.3 310 66.1
Os03g0844850 Oryza sativa ssp. japonica HOM05D002002 ORTHO05D003658 6.3e-44 182.2 297 58.2
ATR0824G058 Amborella trichopoda HOM05D002002 ORTHO05D003658 1.5e-16 91.3 151 37.1
MBI10_g11201_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 4.0e-14 83.2 154 33.8
CANSAT01G1710 Cannabis sativa HOM05D002002 ORTHO05D003658 9.7e-13 78.6 89 43.8
Eucgr.B03286 Eucalyptus grandis HOM05D002002 ORTHO05D003658 4.8e-12 76.3 167 27.5
Lj3C1058T7 Lonicera japonica HOM05D002002 ORTHO05D008711 8.2e-12 75.5 80 42.5
Atru.chr11.2098 Acer truncatum HOM05D002002 ORTHO05D003658 3.1e-11 73.6 101 36.6
MD13G1101500 Malus domestica HOM05D002002 ORTHO05D003658 5.3e-11 72.8 165 29.7
Prupe.1G244300 Prunus persica HOM05D002002 ORTHO05D003658 2.0e-10 70.9 160 27.5
Aqoxy5G03765 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 4.5e-10 69.7 72 43.1
FAN02G4604 Fragaria x ananassa HOM05D002002 ORTHO05D003658 5.9e-10 69.3 89 39.3
Haze_12247 Corylus avellana HOM05D002002 ORTHO05D008711 7.7e-10 68.9 98 36.7
FAN14G2025 Fragaria x ananassa HOM05D002002 ORTHO05D003658 7.7e-10 68.9 89 39.3
Hma1.2p1_0160F.1_g071270 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 7.7e-10 68.9 90 38.9
Lj2g0007304 Lotus japonicus HOM05D002002 ORTHO05D003658 7.7e-10 68.9 87 37.9
Thecc.02G259800 Theobroma cacao HOM05D002002 ORTHO05D003658 7.7e-10 68.9 93 36.6
Actinidia15095 Actinidia chinensis HOM05D002002 ORTHO05D003658 1.0e-09 68.6 161 29.8
MELO3C010690.2 Cucumis melo HOM05D002002 ORTHO05D003658 1.3e-09 68.2 93 39.8
CsaV3_2G024930 Cucumis sativus L. HOM05D002002 ORTHO05D003658 1.3e-09 68.2 85 43.5
FvH4_6g24840 Fragaria vesca HOM05D002002 ORTHO05D003658 1.3e-09 68.2 89 39.3
FAN05G0600 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.3e-09 68.2 89 39.3
FAN05G4965 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.3e-09 68.2 89 39.3
COL.COLO4_24276 Corchorus olitorius HOM05D002002 ORTHO05D008711 1.7e-09 67.8 82 40.2
Manes.13G024400 Manihot esculenta HOM05D002002 ORTHO05D003658 1.7e-09 67.8 95 38.9
TWI36G0682 Tripterygium wilfordii HOM05D002002 ORTHO05D003658 1.7e-09 67.8 80 38.8
ClCG08G017700 Citrullus lanatus HOM05D002002 ORTHO05D003658 2.2e-09 67.4 100 38.0
PGR102G0007 Punica granatum HOM05D002002 ORTHO05D003658 2.2e-09 67.4 215 23.3
TAR374G1279 Trochodendron aralioides HOM05D002002 ORTHO05D003658 2.2e-09 67.4 90 41.1
Sed0021898 Sechium edule HOM05D002002 ORTHO05D003658 2.9e-09 67.0 84 40.5
ECA233G4313 Erigeron canadensis HOM05D002002 ORTHO05D008711 5.0e-09 66.2 89 40.4
Manes.12G023250 Manihot esculenta HOM05D002002 ORTHO05D003658 5.0e-09 66.2 158 27.2
Peaxi162Scf00047g02117 Petunia axillaris HOM05D002002 ORTHO05D003658 6.5e-09 65.9 82 37.8
Dinv24784 Davidia involucrata HOM05D002002 ORTHO05D003658 8.5e-09 65.5 87 33.3
Potri.010G046225 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.1e-08 65.1 84 38.1
Gohir.D02G158850 Gossypium hirsutum HOM05D002002 ORTHO05D003658 1.5e-08 64.7 90 37.8
TAR627G0575 Trochodendron aralioides HOM05D003572 ORTHO05D004118 1.5e-08 64.7 83 39.8
Cpa.g.sc33.19 Carica papaya HOM05D002002 ORTHO05D008711 1.9e-08 64.3 75 41.3
Nitab4.5_0003609g0010 Nicotiana tabacum HOM05D002002 ORTHO05D008711 1.9e-08 64.3 87 39.1
COL.COLO4_19649 Corchorus olitorius HOM05D002002 ORTHO05D003658 2.5e-08 63.9 84 39.3
DCAR_021086 Daucus carota HOM05D002002 ORTHO05D003658 2.5e-08 63.9 91 39.6
DCAR_024430 Daucus carota HOM05D002002 ORTHO05D008711 2.5e-08 63.9 72 41.7
Lj6P812T18 Lonicera japonica HOM05D002002 ORTHO05D003658 2.5e-08 63.9 93 36.6
RcHm_v2.0_Chr4g0432961 Rosa chinensis HOM05D002002 ORTHO05D008711 2.5e-08 63.9 90 35.6
Ciclev10033784m.g Citrus clementina HOM05D002002 ORTHO05D003658 3.2e-08 63.5 76 38.2
Cc11_g15730 Coffea canephora HOM05D002002 ORTHO05D008711 3.2e-08 63.5 90 37.8
Gohir.D07G199350 Gossypium hirsutum HOM05D002002 ORTHO05D003658 3.2e-08 63.5 79 40.5
QL03p058095 Quercus lobata HOM05D002002 ORTHO05D003658 3.2e-08 63.5 96 38.5
Gohir.A03G135305 Gossypium hirsutum HOM05D002002 ORTHO05D003658 4.2e-08 63.2 90 36.7
DCAR_019665 Daucus carota HOM05D002002 ORTHO05D003658 5.5e-08 62.8 80 40.0
Migut.M00058 Erythranthe guttata HOM05D002002 ORTHO05D003658 5.5e-08 62.8 86 38.4
Gohir.A07G193000 Gossypium hirsutum HOM05D002002 ORTHO05D003658 5.5e-08 62.8 79 40.5
Oeu056712.1 Olea europaea HOM05D002002 ORTHO05D013431 5.5e-08 62.8 76 36.8
Psat2g100360 Pisum sativum HOM05D002002 ORTHO05D003658 5.5e-08 62.8 85 36.5
Sopen05g008380 Solanum pennellii HOM05D002002 ORTHO05D003658 5.5e-08 62.8 76 39.5
TAR626G0223 Trochodendron aralioides HOM05D002002 ORTHO05D003658 5.5e-08 62.8 78 38.5
Actinidia35198 Actinidia chinensis HOM05D002148 ORTHO05D002547 7.2e-08 62.4 86 40.7
Hma1.2p1_0629F.1_g192180 Hydrangea macrophylla HOM05D002002 ORTHO05D003658 7.2e-08 62.4 77 41.6
Lj4g0014379 Lotus japonicus HOM05D002002 ORTHO05D003658 7.2e-08 62.4 83 39.8
HanXRQChr10g0306811 Helianthus annuus HOM05D002002 ORTHO05D003658 9.4e-08 62.0 77 39.0
CSS0040170 Camellia sinensis var. sinensis HOM05D002002 ORTHO05D003658 1.2e-07 61.6 186 26.3
Gorai.001G223200 Gossypium raimondii HOM05D002002 ORTHO05D003658 1.2e-07 61.6 79 40.5
CAN.G832.2 Capsicum annuum HOM05D002002 ORTHO05D008711 1.6e-07 61.2 87 37.9
Migut.E00200 Erythranthe guttata HOM05D002002 ORTHO05D003658 1.6e-07 61.2 94 36.2
MBI15_g44612_MAGBIO Magnolia biondii HOM05D002002 ORTHO05D003658 1.6e-07 61.2 91 36.3
CiPaw.03G283400 Carya illinoinensis HOM05D002002 ORTHO05D003658 2.1e-07 60.8 89 38.2
HanXRQChr08g0235831 Helianthus annuus HOM05D007028 ORTHO05D003658 2.1e-07 60.8 103 37.9
DCAR_031154 Daucus carota HOM05D002002 ORTHO05D003658 2.7e-07 60.5 76 34.2
Cc05_g02030 Coffea canephora HOM05D002002 ORTHO05D003658 3.6e-07 60.1 79 39.2
Haze_12592 Corylus avellana HOM05D002002 ORTHO05D003658 3.6e-07 60.1 77 40.3
MD17G1118900 Malus domestica HOM05D002002 ORTHO05D003658 3.6e-07 60.1 75 42.7
Cfa014206 Carpinus fangiana HOM05D002002 ORTHO05D003658 4.7e-07 59.7 77 39.0
Nitab4.5_0013754g0020 Nicotiana tabacum HOM05D002002 ORTHO05D003658 4.7e-07 59.7 79 36.7
Actinidia09481 Actinidia chinensis HOM05D007028 ORTHO05D003658 6.1e-07 59.3 73 42.5
Nitab4.5_0001229g0060 Nicotiana tabacum HOM05D002002 ORTHO05D003658 6.1e-07 59.3 81 34.6
Oeu034272.1 Olea europaea HOM05D002002 ORTHO05D003658 6.1e-07 59.3 90 34.4
Oeu034273.1 Olea europaea HOM05D002002 ORTHO05D003658 6.1e-07 59.3 90 34.4
Thecc.01G199000 Theobroma cacao HOM05D002002 ORTHO05D003658 6.1e-07 59.3 87 36.8
Phvul.003G065000 Phaseolus vulgaris HOM05D002002 ORTHO05D003658 8.0e-07 58.9 92 37.0
Potri.002G217100 Populus trichocarpa HOM05D002002 ORTHO05D003658 8.0e-07 58.9 79 39.2
VMungo0251G0889 Vigna mungo HOM05D002002 ORTHO05D003658 8.0e-07 58.9 92 34.8
Solyc12g006190.1 Solanum lycopersicum HOM05D002002 ORTHO05D003658 1.0e-06 58.5 87 32.2
Sopen12g002150 Solanum pennellii HOM05D002002 ORTHO05D003658 1.0e-06 58.5 87 32.2
Aqoxy6G00290 Aquilegia oxysepala HOM05D002002 ORTHO05D003658 1.4e-06 58.2 90 33.3
FvH4_6g40440 Fragaria vesca HOM05D002002 ORTHO05D003658 1.4e-06 58.2 75 42.7
FAN02G0217 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.4e-06 58.2 75 42.7
Glyma.01G025900 Glycine max HOM05D002002 ORTHO05D003658 1.4e-06 58.2 79 41.8
Lsat_1_v5_gn_5_122320 Lactuca sativa HOM05D002002 ORTHO05D003658 1.4e-06 58.2 81 35.8
DCAR_007440 Daucus carota HOM05D007028 ORTHO05D003658 1.8e-06 57.8 72 43.1
ECA234G3591 Erigeron canadensis HOM05D002002 ORTHO05D003658 1.8e-06 57.8 84 33.3
Migut.D01094 Erythranthe guttata HOM05D007028 ORTHO05D003658 1.8e-06 57.8 78 38.5
FAN09G2779 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.8e-06 57.8 75 42.7
FAN14G1296 Fragaria x ananassa HOM05D002002 ORTHO05D003658 1.8e-06 57.8 75 42.7
Manes.12G063951 Manihot esculenta HOM05D002002 ORTHO05D003658 1.8e-06 57.8 75 40.0
Potri.008G186700 Populus trichocarpa HOM05D002002 ORTHO05D003658 1.8e-06 57.8 76 38.2
FAN05G3832 Fragaria x ananassa HOM05D002002 ORTHO05D003658 2.3e-06 57.4 75 42.7
MD09G1129900 Malus domestica HOM05D002002 ORTHO05D003658 2.3e-06 57.4 75 40.0
Cfa001903 Carpinus fangiana HOM05D007028 ORTHO05D003658 4.0e-06 56.6 96 39.6
Dinv23308 Davidia involucrata HOM05D007028 ORTHO05D010012 4.0e-06 56.6 87 40.2
Prupe.3G195300 Prunus persica HOM05D002002 ORTHO05D003658 4.0e-06 56.6 75 41.3
RcHm_v2.0_Chr2g0155671 Rosa chinensis HOM05D002002 ORTHO05D003658 4.0e-06 56.6 75 40.0
Ca_22584_v3 Cicer arietinum L. HOM05D002002 ORTHO05D008711 5.2e-06 56.2 79 36.7
Lsat_1_v5_gn_8_100120 Lactuca sativa HOM05D007028 ORTHO05D003658 5.2e-06 56.2 103 35.0
Oeu023068.1 Olea europaea HOM05D002002 ORTHO05D003658 5.2e-06 56.2 76 35.5
Migut.K00599 Erythranthe guttata HOM05D002002 ORTHO05D003658 8.8e-06 55.5 201 24.9
PGSC0003DMG400028833 Solanum tuberosum HOM05D002002 ORTHO05D003658 8.8e-06 55.5 81 32.1
Zm00001eb385060 Zea mays HOM05D007028 ORTHO05D003658 8.8e-06 55.5 69 46.4


User provided reference genes

Program Settings