Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb210820 Zea mays HOM05D006777 ORTHO05D008360 1.5e-141 506.1 256 100.0
Os03g0848300 Oryza sativa ssp. japonica HOM05D006777 ORTHO05D008360 1.3e-84 317.0 188 88.8
Glyma.08G111500 Glycine max HOM05D006777 ORTHO05D008360 6.1e-82 308.1 188 85.6
HPP92_006972 Vanilla planifolia HOM05D006777 ORTHO05D008360 1.4e-81 307.0 188 86.2
CSS0000801 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 1.8e-81 306.6 188 85.6
RcHm_v2.0_Chr4g0414361 Rosa chinensis HOM05D006777 ORTHO05D008360 1.8e-81 306.6 188 84.6
RcHm_v2.0_Chr7g0213901 Rosa chinensis HOM05D006777 ORTHO05D008360 1.8e-81 306.6 188 84.6
TAR362G0671 Trochodendron aralioides HOM05D006777 ORTHO05D008360 1.8e-81 306.6 208 78.8
Glyma.05G153800 Glycine max HOM05D006777 ORTHO05D008360 2.3e-81 306.2 188 85.1
CiPaw.02G065600 Carya illinoinensis HOM05D006777 ORTHO05D008360 4.0e-81 305.4 188 85.6
CDE06G2004 Ceratophyllum demersum HOM05D006777 ORTHO05D008360 4.0e-81 305.4 188 85.1
Lj4g0000567 Lotus japonicus HOM05D006777 ORTHO05D008360 4.0e-81 305.4 188 85.1
GSVIVG01020914001 Vitis vinifera HOM05D006777 ORTHO05D008360 4.0e-81 305.4 188 85.1
Duzib268G0333 Durio zibethinus HOM05D006777 ORTHO05D008360 5.2e-81 305.1 188 85.1
Thecc.04G200300 Theobroma cacao HOM05D006777 ORTHO05D008360 5.2e-81 305.1 188 85.1
Actinidia23410 Actinidia chinensis HOM05D006777 ORTHO05D008360 8.9e-81 304.3 188 85.1
ATR1147G041 Amborella trichopoda HOM05D006777 ORTHO05D008360 1.2e-80 303.9 188 84.6
CANSAT78G1417 Cannabis sativa HOM05D006777 ORTHO05D008360 1.2e-80 303.9 188 85.1
FvH4_4g13710 Fragaria vesca HOM05D006777 ORTHO05D008360 1.2e-80 303.9 188 84.6
Manes.03G146100 Manihot esculenta HOM05D006777 ORTHO05D008360 1.2e-80 303.9 188 84.0
Dinv38213 Davidia involucrata HOM05D006777 ORTHO05D008360 2.0e-80 303.1 188 84.6
PSO063G4325 Papaver somniferum HOM05D006777 ORTHO05D008360 2.0e-80 303.1 188 85.1
SalBow8G2353 Salvia bowleyana HOM05D006777 ORTHO05D008360 2.0e-80 303.1 188 84.6
SalBow8G2632 Salvia bowleyana HOM05D006777 ORTHO05D008360 2.0e-80 303.1 188 84.6
PSO017G6923 Papaver somniferum HOM05D006777 ORTHO05D008360 2.6e-80 302.8 188 84.6
TWI53G1099 Tripterygium wilfordii HOM05D006777 ORTHO05D008360 2.6e-80 302.8 188 83.5
MSTRG.4231 Avicennia marina HOM05D006777 ORTHO05D008360 3.4e-80 302.4 197 81.2
Sc25g0003260 Simmondsia chinensis HOM05D006777 ORTHO05D008360 3.4e-80 302.4 188 84.0
Ciclev10006063m.g Citrus clementina HOM05D006777 ORTHO05D008360 4.4e-80 302.0 188 83.0
Sopen12g033210 Solanum pennellii HOM05D006777 ORTHO05D008360 4.4e-80 302.0 188 84.6
Atru.chr4.1633 Acer truncatum HOM05D006777 ORTHO05D008360 5.8e-80 301.6 188 84.0
AUR62016205 Chenopodium quinoa HOM05D006777 ORTHO05D008360 5.8e-80 301.6 192 81.2
Solyc12g098430.2 Solanum lycopersicum HOM05D006777 ORTHO05D008360 5.8e-80 301.6 188 84.0
Migut.G00716 Erythranthe guttata HOM05D006777 ORTHO05D008360 7.5e-80 301.2 188 83.5
Gohir.A02G020900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 7.5e-80 301.2 187 84.5
Gohir.D02G024900 Gossypium hirsutum HOM05D006777 ORTHO05D008360 7.5e-80 301.2 187 84.5
Gorai.005G030800 Gossypium raimondii HOM05D006777 ORTHO05D008360 7.5e-80 301.2 187 84.5
Prupe.1G158800 Prunus persica HOM05D006777 ORTHO05D008360 9.8e-80 300.8 188 83.0
Aqoxy5G00004 Aquilegia oxysepala HOM05D006777 ORTHO05D008360 3.7e-79 298.9 194 81.4
BcaC02g09355 Brassica carinata HOM05D006777 ORTHO05D008360 3.7e-79 298.9 188 83.0
MD04G1012700 Malus domestica HOM05D006777 ORTHO05D008360 3.7e-79 298.9 188 82.4
Medtr8g085290 Medicago truncatula HOM05D006777 ORTHO05D008360 3.7e-79 298.9 188 83.0
THA.LOC104804809 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 4.9e-79 298.5 188 83.0
CsaV3_2G011130 Cucumis sativus L. HOM05D006777 ORTHO05D008360 6.4e-79 298.1 188 83.0
DCAR_026626 Daucus carota HOM05D006777 ORTHO05D008360 6.4e-79 298.1 187 83.4
HanXRQChr01g0022451 Helianthus annuus HOM05D006777 ORTHO05D008360 6.4e-79 298.1 188 82.4
THA.LOC104808706 Tarenaya hassleriana HOM05D006777 ORTHO05D008360 6.4e-79 298.1 188 83.0
MELO3C019533.2 Cucumis melo HOM05D006777 ORTHO05D008360 8.3e-79 297.7 188 83.0
PGR083G1334 Punica granatum HOM05D006777 ORTHO05D008360 8.3e-79 297.7 188 82.4
FAN22G2344 Fragaria x ananassa HOM05D006777 ORTHO05D008360 1.1e-78 297.4 194 82.0
Aa31LG9G3900 Aethionema arabicum HOM05D006777 ORTHO05D008360 1.4e-78 297.0 188 82.4
Psat7g074160 Pisum sativum HOM05D006777 ORTHO05D008360 1.4e-78 297.0 186 84.4
BcaB02g08630 Brassica carinata HOM05D006777 ORTHO05D008360 2.4e-78 296.2 188 81.9
Mapoly0060s0011 Marchantia polymorpha HOM05D006777 ORTHO05D008360 2.4e-78 296.2 188 81.9
TPR.G11902 Trifolium pratense HOM05D006777 ORTHO05D008360 2.4e-78 296.2 187 82.9
Sed0015167 Sechium edule HOM05D006777 ORTHO05D008360 4.1e-78 295.4 188 81.9
Sp7g12000 Schrenkiella parvula HOM05D006777 ORTHO05D008360 1.2e-77 293.9 188 81.4
AL7G42240 Arabidopsis lyrata HOM05D006777 ORTHO05D008360 1.6e-77 293.5 188 81.4
AT4G14147 Arabidopsis thaliana HOM05D006777 ORTHO05D008360 1.6e-77 293.5 188 81.4
Carub.0007s2827 Capsella rubella HOM05D006777 ORTHO05D008360 1.6e-77 293.5 188 81.4
Thhalv10026384m.g Eutrema salsugineum HOM05D006777 ORTHO05D008360 2.0e-77 293.1 188 81.4
arahy.Tifrunner.gnm1.ann1.QE6BNJ Arachis hypogaea HOM05D006777 ORTHO05D008360 6.0e-77 291.6 201 78.1
Potri.017G057400 Populus trichocarpa HOM05D006777 ORTHO05D008360 6.0e-77 291.6 188 80.3
C04p41680 Brassica napus HOM05D006777 ORTHO05D008360 1.0e-76 290.8 189 82.0
arahy.Tifrunner.gnm1.ann1.GXV5N1 Arachis hypogaea HOM05D006777 ORTHO05D008360 2.3e-76 289.7 201 77.6
Hund11971 Selenicereus undatus HOM05D006777 ORTHO05D008360 2.3e-76 289.7 185 81.1
FAN12G2838 Fragaria x ananassa HOM05D006777 ORTHO05D008360 6.6e-76 288.1 188 81.9
A04p08010 Brassica napus HOM05D006777 ORTHO05D008360 8.6e-76 287.7 189 81.0
FAN07G2803 Fragaria x ananassa HOM05D006777 ORTHO05D008360 8.6e-76 287.7 208 76.4
Nitab4.5_0000676g0120 Nicotiana tabacum HOM05D006777 ORTHO05D008360 1.1e-75 287.3 189 81.0
Pp3c3_19880 Physcomitrium patens HOM05D006777 ORTHO05D008360 9.5e-75 284.3 187 79.1
Eucgr.H02768 Eucalyptus grandis HOM05D006777 ORTHO05D008360 3.6e-74 282.3 176 83.0
FAN17G1701 Fragaria x ananassa HOM05D006777 ORTHO05D008360 4.7e-74 282.0 195 77.9
SMO146G0157 Selaginella moellendorffii HOM05D006777 ORTHO05D008360 1.4e-73 280.4 187 78.1
Lalb_Chr12g0205521 Lupinus albus HOM05D006777 ORTHO05D008360 6.8e-73 278.1 188 77.7
Lsat_1_v5_gn_1_72060 Lactuca sativa HOM05D006777 ORTHO05D008360 8.9e-73 277.7 176 82.4
AagrBONN_evm.TU.Sc2ySwM_228.5073 Anthoceros agrestis HOM05D006777 ORTHO05D008360 5.8e-72 275.0 183 79.2
ClCG06G008050 Citrullus lanatus HOM05D006777 ORTHO05D008360 3.2e-70 269.2 181 79.6
MELO3C020359.2 Cucumis melo HOM05D006777 ORTHO05D008360 2.7e-69 266.2 170 81.8
Lalb_Chr07g0186741 Lupinus albus HOM05D006777 ORTHO05D008360 4.6e-69 265.4 170 81.8
unitig_37.g12031 Utricularia gibba HOM05D006777 ORTHO05D008360 1.7e-68 263.5 170 80.6
Duzib212G0541 Durio zibethinus HOM05D006777 ORTHO05D008360 5.1e-68 261.9 166 83.1
CBR_g4477 Chara braunii HOM05D006777 ORTHO05D008360 7.3e-67 258.1 193 67.9
CsaV3_3G018320 Cucumis sativus L. HOM05D006777 ORTHO05D008360 7.3e-67 258.1 166 81.3
Hma1.2p1_0187F.1_g082390 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 8.1e-66 254.6 160 83.8
Sabra17G0050600 Salix brachista HOM05D006777 ORTHO05D008360 5.2e-65 251.9 166 79.5
BolC4t25746H Brassica oleracea HOM05D006777 ORTHO05D008360 1.2e-64 250.8 160 81.9
Actinidia35856 Actinidia chinensis HOM05D006777 ORTHO05D008360 2.0e-64 250.0 159 81.8
Nn1g07943 Nelumbo nucifera HOM05D006777 ORTHO05D008360 2.0e-64 250.0 159 82.4
BraA04t16489Z Brassica rapa HOM05D006777 ORTHO05D008360 9.9e-64 247.7 160 80.6
Peaxi162Scf00652g00116 Petunia axillaris HOM05D006777 ORTHO05D008360 1.1e-62 244.2 188 72.3
AUR62039283 Chenopodium quinoa HOM05D006777 ORTHO05D008360 1.3e-60 237.3 192 68.2
Nitab4.5_0000850g0170 Nicotiana tabacum HOM05D006777 ORTHO05D008360 2.3e-60 236.5 183 71.6
EL10Ac3g05505 Beta vulgaris HOM05D006777 ORTHO05D008360 3.0e-60 236.1 188 69.7
SGA_v2.0_scaffold14G07057 Striga asiatica HOM05D006777 ORTHO05D008360 3.0e-60 236.1 280 52.9
Dinv27219 Davidia involucrata HOM05D006777 ORTHO05D008360 8.6e-60 234.6 188 70.2
Haze_11625 Corylus avellana HOM05D006777 ORTHO05D008360 6.2e-58 228.4 234 59.8
COL.COLO4_20174 Corchorus olitorius HOM05D001598 ORTHO05D002757 3.1e-57 226.1 148 81.1
PGSC0003DMG402004570 Solanum tuberosum HOM05D006777 ORTHO05D008360 2.0e-56 223.4 149 80.5
Lj6A528G35 Lonicera japonica HOM05D006777 ORTHO05D008360 5.1e-52 208.8 144 78.5
CSS0009293 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 6.6e-52 208.4 139 81.3
CSS0028561 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 6.6e-52 208.4 139 81.3
Hma1.2p1_0187F.1_g082380 Hydrangea macrophylla HOM05D006777 ORTHO05D008360 8.7e-52 208.0 111 95.5
SGA_v2.0_scaffold4G02170 Striga asiatica HOM05D006777 ORTHO05D008360 4.3e-51 205.7 251 53.4
SHI07424 Sapria himalayana HOM05D006777 ORTHO05D008360 1.2e-50 204.1 149 73.2
CARHR220180 Cardamine hirsuta HOM05D006777 ORTHO05D008360 8.1e-50 201.4 109 92.7
Haze_27630 Corylus avellana HOM05D006777 ORTHO05D008360 3.1e-49 199.5 187 55.6
Cre06.g260800 Chlamydomonas reinhardtii HOM05D006777 ORTHO05D008360 1.7e-39 167.2 195 48.2
QL06p026356 Quercus lobata HOM05D000003 ORTHO05D008360 2.2e-39 166.8 135 69.6
Hund03125 Selenicereus undatus HOM05D006777 ORTHO05D008360 6.4e-39 165.2 195 52.3
Sed0006533 Sechium edule HOM05D006777 ORTHO05D008360 1.5e-32 144.1 75 93.3
vmacro00459 Vaccinium macrocarpon HOM05D006777 ORTHO05D008360 4.2e-30 136.0 137 56.2
ECA248G0011 Erigeron canadensis HOM05D006777 ORTHO05D008360 2.3e-28 130.2 94 74.5
CAN.G767.6 Capsicum annuum HOM05D006777 ORTHO05D008360 6.7e-28 128.6 94 74.5
Cpa.g.c27575.2 Carica papaya HOM05D006777 ORTHO05D008360 7.6e-24 115.2 60 91.7
Cc00_g31310 Coffea canephora HOM05D006777 ORTHO05D008360 1.4e-22 110.9 61 93.4
Lj3P402T13 Lonicera japonica HOM05D006777 ORTHO05D008360 7.1e-22 108.6 93 64.5
Cc03_g11170 Coffea canephora HOM05D006777 ORTHO05D008360 2.5e-19 100.1 50 96.0
CSS0011736 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 6.1e-13 79.0 37 94.6
CSS0009674 Camellia sinensis var. sinensis HOM05D006777 ORTHO05D008360 1.7e-10 70.9 38 86.8
Lj3A409T19 Lonicera japonica HOM05D006777 ORTHO05D008360 5.0e-07 59.3 30 96.7


User provided reference genes

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