Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 2.4e-170 602.1 303 100.0
Os02g0127900 Oryza sativa ssp. japonica HOM05D002388 ORTHO05D004745 3.9e-51 206.1 155 74.2
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 1.3e-41 174.5 201 51.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 2.4e-40 170.2 204 51.0
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 2.4e-40 170.2 201 51.2
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 3.1e-40 169.9 198 49.5
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 5.3e-40 169.1 204 49.0
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 9.0e-40 168.3 200 50.0
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 1.2e-39 167.9 202 49.0
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.5e-39 167.5 198 50.5
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 2.0e-39 167.2 200 51.5
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 2.0e-39 167.2 200 51.5
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.0e-39 167.2 206 51.0
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 5.8e-39 165.6 203 50.7
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 5.8e-39 165.6 203 50.7
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 5.8e-39 165.6 199 50.3
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 9.9e-39 164.9 199 49.2
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 1.3e-38 164.5 197 47.7
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 1.7e-38 164.1 201 49.8
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 1.7e-38 164.1 201 49.8
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 2.2e-38 163.7 174 54.6
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 2.9e-38 163.3 203 47.3
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 3.8e-38 162.9 203 50.2
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.4e-38 161.8 201 51.2
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 8.4e-38 161.8 201 51.2
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.1e-37 161.4 202 48.5
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 1.1e-37 161.4 202 48.0
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 1.4e-37 161.0 198 49.5
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.4e-37 161.0 194 50.0
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.9e-37 160.6 200 50.5
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.4e-37 160.2 201 50.7
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 4.2e-37 159.5 203 47.8
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 4.2e-37 159.5 202 50.5
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 5.5e-37 159.1 199 48.7
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 7.1e-37 158.7 201 50.2
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 9.3e-37 158.3 201 49.8
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 9.3e-37 158.3 207 46.9
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 1.2e-36 157.9 218 43.6
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 2.1e-36 157.1 195 47.2
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 2.1e-36 157.1 197 48.7
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 2.1e-36 157.1 202 47.0
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 2.7e-36 156.8 204 46.6
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.7e-36 156.8 200 50.0
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 6.0e-36 155.6 196 48.5
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 7.9e-36 155.2 208 49.5
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 7.9e-36 155.2 206 46.6
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 7.9e-36 155.2 204 48.0
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-35 154.8 183 49.7
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.0e-35 154.8 199 48.2
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.3e-35 154.5 194 47.4
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 1.8e-35 154.1 197 46.7
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.3e-35 153.7 199 47.2
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.0e-35 153.3 202 47.5
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 3.0e-35 153.3 211 44.5
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 3.0e-35 153.3 197 46.2
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 3.0e-35 153.3 205 47.8
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 5.1e-35 152.5 199 45.7
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 6.7e-35 152.1 199 46.7
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 6.7e-35 152.1 199 46.7
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 6.7e-35 152.1 199 46.7
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 6.7e-35 152.1 198 45.5
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 6.7e-35 152.1 197 46.7
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 6.7e-35 152.1 202 47.5
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 6.7e-35 152.1 198 46.0
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 8.7e-35 151.8 201 45.8
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.1e-34 151.4 197 45.2
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 1.5e-34 151.0 195 47.2
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 2.5e-34 150.2 199 47.2
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.3e-34 149.8 200 46.5
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 3.3e-34 149.8 200 48.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 3.3e-34 149.8 198 46.5
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 4.3e-34 149.4 169 47.9
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 5.6e-34 149.1 199 44.2
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 5.6e-34 149.1 158 52.5
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 5.6e-34 149.1 156 49.4
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 7.4e-34 148.7 200 48.0
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 7.4e-34 148.7 200 48.0
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 7.4e-34 148.7 197 46.2
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 7.4e-34 148.7 198 46.0
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 9.6e-34 148.3 200 47.0
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 1.3e-33 147.9 197 45.2
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 1.3e-33 147.9 98 70.4
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 1.3e-33 147.9 198 46.5
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.6e-33 147.5 209 46.9
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.8e-33 146.7 198 47.0
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 3.7e-33 146.4 189 45.0
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 3.7e-33 146.4 198 45.5
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 4.8e-33 146.0 203 45.8
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 4.8e-33 146.0 199 43.7
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.1e-32 144.8 175 46.9
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 1.4e-32 144.4 199 47.2
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 1.8e-32 144.1 201 46.3
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.4e-32 143.7 196 45.9
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 2.4e-32 143.7 198 44.4
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 2.4e-32 143.7 197 43.1
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 3.1e-32 143.3 203 45.8
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 4.0e-32 142.9 197 45.2
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 9.0e-32 141.7 111 63.1
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.5e-31 141.0 202 45.5
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 2.0e-31 140.6 195 45.1
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 2.0e-31 140.6 139 54.7
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 2.0e-31 140.6 203 45.8
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 2.0e-31 140.6 194 43.8
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 2.0e-31 140.6 194 43.8
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 2.6e-31 140.2 89 73.0
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.6e-31 140.2 200 47.5
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 5.8e-31 139.0 89 74.2
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 7.6e-31 138.7 201 43.8
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 1.0e-30 138.3 199 43.2
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 1.3e-30 137.9 89 70.8
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 1.3e-30 137.9 211 43.1
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.7e-30 137.5 198 42.4
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 2.2e-30 137.1 200 44.0
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.2e-30 137.1 222 42.3
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 2.9e-30 136.7 184 44.6
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 2.9e-30 136.7 202 44.1
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 2.9e-30 136.7 217 43.8
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 3.8e-30 136.3 177 47.5
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 4.9e-30 136.0 198 44.9
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.1e-29 134.8 200 42.5
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 1.1e-29 134.8 198 42.9
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-29 134.4 149 51.0
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 2.5e-29 133.7 199 42.7
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 3.2e-29 133.3 135 52.6
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 3.2e-29 133.3 195 45.1
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 5.5e-29 132.5 201 40.3
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 9.3e-29 131.7 194 44.3
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.2e-28 131.3 181 42.0
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.2e-28 131.3 169 45.0
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.2e-28 131.3 169 45.0
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 1.2e-28 131.3 192 42.2
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 1.6e-28 131.0 190 44.2
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 3.5e-28 129.8 93 64.5
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 3.5e-28 129.8 198 41.9
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 1.0e-27 128.3 260 35.4
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 3.0e-27 126.7 199 42.7
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 5.1e-27 125.9 233 41.2
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 9.7e-26 121.7 200 38.5
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 3.7e-25 119.8 269 33.5
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 1.4e-24 117.9 138 48.6
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 3.1e-24 116.7 133 49.6
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 9.0e-24 115.2 204 42.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.2e-23 114.8 190 39.5
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 3.8e-22 109.8 201 38.3
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 5.5e-21 105.9 119 50.4
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 7.2e-21 105.5 122 49.2
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 7.2e-21 105.5 325 29.2
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 2.7e-20 103.6 196 37.8
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 8.8e-19 98.6 156 39.1
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.7e-17 94.4 180 37.2
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 5.0e-14 82.8 201 33.8
CBR_g48716 Chara braunii HOM05D002388 ORTHO05D004745 1.4e-13 81.3 84 51.2
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 1.4e-13 81.3 89 53.9
DCAR_008237 Daucus carota HOM05D002388 ORTHO05D004745 3.2e-13 80.1 156 40.4
Actinidia07899 Actinidia chinensis HOM05D002388 ORTHO05D004745 4.2e-13 79.7 78 56.4
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 4.2e-13 79.7 78 57.7
Ciclev10003604m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.7e-12 77.0 153 37.9
DCAR_004282 Daucus carota HOM05D002388 ORTHO05D004745 3.9e-11 73.2 152 38.8
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 5.1e-11 72.8 128 41.4
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 8.8e-11 72.0 44 77.3
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 8.8e-11 72.0 44 77.3
SHI07361 Sapria himalayana HOM05D002388 ORTHO05D000131 1.1e-10 71.6 96 45.8
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 3.3e-10 70.1 44 75.0
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 3.7e-09 66.6 52 57.7
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.4e-08 64.7 39 74.4
Zm00001eb385430 Zea mays HOM05D002388 ORTHO05D004745 3.8e-06 56.6 26 100.0


User provided reference genes

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