Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb208190 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1243.4 777 100.0
Zm00001eb055550 Zea mays HOM05D003193 ORTHO05D004924 0.0e+00 1173.7 777 95.2
Os03g0721200 Oryza sativa ssp. japonica HOM05D003193 ORTHO05D004924 0.0e+00 1110.9 775 90.5
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 1.6e-250 869.8 774 72.9
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 1.6e-250 869.8 777 61.6
ATR0787G173 Amborella trichopoda HOM05D003193 ORTHO05D004924 2.7e-250 869.0 761 62.2
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 4.7e-250 868.2 777 61.4
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 3.0e-249 865.5 774 72.6
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 4.0e-249 865.1 777 63.1
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 6.8e-249 864.4 777 62.8
TAR636G2059 Trochodendron aralioides HOM05D003193 ORTHO05D004924 4.4e-248 861.7 776 61.3
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 5.7e-248 861.3 776 61.2
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 1.7e-247 859.8 777 63.3
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 1.1e-246 857.1 777 60.5
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 1.8e-246 856.3 777 71.7
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 3.1e-246 855.5 775 60.1
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 5.3e-246 854.7 784 62.9
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 1.6e-245 853.2 778 60.5
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 5.9e-245 851.3 778 60.8
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 5.9e-245 851.3 779 60.7
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 1.3e-244 850.1 777 63.7
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.1e-243 847.0 777 61.1
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 1.1e-243 847.0 777 60.5
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 1.5e-243 846.7 777 60.2
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 2.5e-243 845.9 776 63.0
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 5.5e-243 844.7 772 61.0
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.5e-243 844.7 776 61.6
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 9.4e-243 844.0 776 62.9
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 2.7e-242 842.4 776 59.9
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 3.6e-242 842.0 776 59.9
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 4.7e-242 841.6 777 59.8
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 1.4e-241 840.1 780 59.2
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 3.0e-241 839.0 777 63.4
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 3.0e-241 839.0 775 68.3
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 4.0e-241 838.6 777 63.1
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 8.8e-241 837.4 777 58.8
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 8.8e-241 837.4 780 62.7
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 8.8e-241 837.4 763 61.1
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.2e-240 837.0 777 59.2
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 2.6e-240 835.9 776 59.5
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 4.4e-240 835.1 776 62.4
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 9.8e-240 833.9 780 60.1
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 9.8e-240 833.9 777 58.9
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 2.2e-239 832.8 776 59.0
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 2.8e-239 832.4 777 58.6
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 4.8e-239 831.6 777 58.4
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 6.3e-239 831.2 781 58.3
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 1.4e-238 830.1 780 59.2
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 5.4e-238 828.2 777 58.8
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 1.2e-237 827.0 765 60.1
Solyc04g050510.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 1.2e-237 827.0 777 58.7
EL10Ac4g09775 Beta vulgaris HOM05D003193 ORTHO05D004924 1.3e-236 823.5 780 66.5
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 3.8e-236 822.0 777 57.9
Lj2C47T5 Lonicera japonica HOM05D003193 ORTHO05D004924 6.6e-236 821.2 777 60.7
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 1.5e-235 820.1 804 57.2
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 2.5e-235 819.3 777 62.8
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 4.2e-235 818.5 778 63.5
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 7.2e-235 817.8 777 58.8
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 2.1e-234 816.2 812 57.5
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 3.6e-234 815.5 736 61.8
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 3.6e-234 815.5 777 61.8
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 3.0e-233 812.4 765 63.0
Peaxi162Scf00071g00269 Petunia axillaris HOM05D003193 ORTHO05D004924 6.8e-233 811.2 764 59.2
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 4.4e-232 808.5 777 62.7
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 2.2e-231 806.2 777 63.4
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 2.2e-231 806.2 769 69.7
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 4.9e-231 805.1 777 68.7
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 6.3e-231 804.7 777 63.7
CiPaw.07G075200 Carya illinoinensis HOM05D003193 ORTHO05D004924 8.3e-231 804.3 777 57.3
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 1.4e-230 803.5 777 68.6
Cpa.g.sc51.21 Carica papaya HOM05D003193 ORTHO05D004924 3.2e-230 802.4 778 58.1
Haze_04475 Corylus avellana HOM05D003193 ORTHO05D004924 1.0e-228 797.3 866 53.5
CARHR056140 Cardamine hirsuta HOM05D003193 ORTHO05D004924 1.3e-228 797.0 777 67.8
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 6.6e-228 794.7 777 67.6
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 2.5e-227 792.7 778 67.7
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 1.6e-226 790.0 777 67.7
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 1.4e-225 786.9 780 60.0
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 4.0e-225 785.4 770 67.4
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 5.2e-225 785.0 770 67.4
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 6.8e-225 784.6 772 67.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 6.8e-225 784.6 772 67.4
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 1.2e-224 783.9 778 66.7
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 2.0e-224 783.1 772 67.4
Hund07170 Selenicereus undatus HOM05D003193 ORTHO05D004924 6.0e-221 771.5 722 66.1
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 1.7e-220 770.0 780 59.6
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 4.3e-219 765.4 825 53.6
Mapoly0135s0025 Marchantia polymorpha HOM05D003193 ORTHO05D004924 1.1e-217 760.8 774 55.0
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 5.4e-214 748.4 777 55.9
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 5.1e-212 741.9 615 64.9
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 2.1e-210 736.5 615 64.4
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 3.4e-208 729.2 811 53.0
Pp3c22_8910 Physcomitrium patens HOM05D003193 ORTHO05D004924 1.7e-207 726.9 774 62.4
Nitab4.5_0000841g0120 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.5e-205 719.2 619 62.5
SMO356G0295 Selaginella moellendorffii HOM05D003193 ORTHO05D004924 1.2e-197 694.1 780 51.7
CAN.G131.16 Capsicum annuum HOM05D003193 ORTHO05D004924 1.7e-191 673.7 714 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2455 Anthoceros agrestis HOM05D003193 ORTHO05D004924 7.8e-189 664.8 778 49.7
unitig_37.g12282 Utricularia gibba HOM05D003193 ORTHO05D004924 1.5e-187 660.6 779 51.5
SalBow1G0653 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.4e-185 654.1 764 51.4
CBR_g28040 Chara braunii HOM05D003193 ORTHO05D004924 5.3e-185 652.1 778 48.7
Hma1.2p1_0123F.1_g058180 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 9.9e-184 647.9 570 63.2
Hma1.2p1_0123F.1_g058190 Hydrangea macrophylla HOM05D003193 ORTHO05D004924 9.9e-184 647.9 570 63.2
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 3.9e-180 636.0 563 63.4
SHI15636 Sapria himalayana HOM05D003193 ORTHO05D004924 4.8e-178 629.0 739 49.8
CDE09G0101 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 4.9e-175 619.0 776 51.5
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 1.0e-167 594.7 585 58.8
SalBow1G3637 Salvia bowleyana HOM05D003193 ORTHO05D004924 1.3e-164 584.3 503 62.0
MD04G1233800 Malus domestica HOM05D003193 ORTHO05D004924 4.1e-145 519.6 764 43.8
Actinidia03821 Actinidia chinensis HOM05D003193 ORTHO05D004924 7.0e-145 518.8 622 50.3
Actinidia06816 Actinidia chinensis HOM05D003193 ORTHO05D004924 1.2e-133 481.5 708 44.9
SEGI_04281 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 5.7e-115 419.5 393 59.8
Ah.02g118790 Amaranthus hybridus HOM05D003193 ORTHO05D004924 1.8e-113 414.5 432 61.1
Nitab4.5_0018351g0010 Nicotiana tabacum HOM05D003193 ORTHO05D023334 5.4e-113 412.9 424 54.7
MCO11G232 Micromonas commoda HOM05D003193 ORTHO05D004924 9.5e-94 349.0 591 40.4
Cre01.g015600 Chlamydomonas reinhardtii HOM05D003193 ORTHO05D004924 1.1e-84 318.9 794 32.0
SEGI_23671 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 6.4e-82 309.7 224 68.8
PRCOL_00002743 Prasinoderma coloniale HOM05D003193 ORTHO05D004924 1.4e-81 308.5 829 31.4
SalBow1G5750 Salvia bowleyana HOM05D003193 ORTHO05D004924 3.5e-64 250.8 276 55.1
Lsat_1_v5_gn_5_100381 Lactuca sativa HOM05D003193 ORTHO05D036451 2.6e-43 181.4 141 70.2
Lsat_1_v5_gn_2_111060 Lactuca sativa HOM05D003193 ORTHO05D000541 1.5e-38 165.6 126 71.4
Actinidia26096 Actinidia chinensis HOM05D003193 ORTHO05D023334 2.4e-36 158.3 187 46.5
Lsat_1_v5_gn_1_12580 Lactuca sativa HOM05D003193 ORTHO05D036451 9.4e-33 146.4 232 40.5
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 5.0e-26 124.0 71 91.5
Oeu055042.1 Olea europaea HOM05D003193 ORTHO05D004924 1.1e-25 122.9 71 90.1
CDE09G0882 Ceratophyllum demersum HOM05D003193 ORTHO05D004924 1.9e-25 122.1 80 75.0
Lsat_1_v5_gn_5_158740 Lactuca sativa HOM05D000727 ORTHO05D000541 2.0e-22 112.1 98 65.3
Ah.02g118650 Amaranthus hybridus HOM05D003193 ORTHO05D004924 4.8e-21 107.5 72 76.4
SEGI_09842 Sequoiadendron giganteum HOM05D003193 ORTHO05D036451 1.7e-18 99.0 83 60.2
Lsat_1_v5_gn_8_87461 Lactuca sativa HOM05D003193 ORTHO05D000541 1.2e-16 92.8 55 85.5
DCAR_029995 Daucus carota HOM05D003193 ORTHO05D023334 7.0e-12 77.0 69 50.7
DCAR_032356 Daucus carota HOM05D003193 ORTHO05D023334 7.0e-12 77.0 69 50.7
Manes.08G142350 Manihot esculenta HOM05D003193 ORTHO05D023334 5.5e-09 67.4 88 37.5
SEGI_35396 Sequoiadendron giganteum HOM05D003193 ORTHO05D004924 1.8e-07 62.4 281 22.1
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 3.4e-06 58.2 253 23.3


User provided reference genes

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