Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 9.3e-127 456.8 223 100.0
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 2.9e-72 275.8 228 63.6
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.8e-24 117.1 242 38.8
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 5.1e-24 115.5 252 39.3
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 2.5e-23 113.2 240 40.0
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.3e-22 110.9 233 36.1
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.6e-22 110.5 238 37.4
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.8e-22 109.8 245 37.1
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 1.4e-21 107.5 239 34.3
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 1.8e-21 107.1 237 34.2
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 1.8e-21 107.1 259 34.7
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.4e-21 106.7 248 35.1
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 2.4e-21 106.7 251 31.9
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 5.3e-21 105.5 248 35.9
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 6.9e-21 105.1 240 35.8
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 2.0e-20 103.6 247 35.6
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 2.6e-20 103.2 236 33.9
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 7.6e-20 101.7 230 34.3
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 7.6e-20 101.7 244 34.0
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 9.9e-20 101.3 235 34.5
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.3e-19 100.9 242 34.3
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.7e-19 100.5 245 34.3
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 2.2e-19 100.1 242 34.3
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 2.9e-19 99.8 242 36.4
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 4.9e-19 99.0 237 35.9
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 4.9e-19 99.0 238 33.6
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.4e-18 97.4 234 34.6
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 1.4e-18 97.4 234 35.0
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 1.4e-18 97.4 237 34.6
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 1.4e-18 97.4 238 34.0
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 1.4e-18 97.4 247 35.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 1.9e-18 97.1 247 34.8
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.9e-18 97.1 233 36.5
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 4.2e-18 95.9 242 31.4
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 7.1e-18 95.1 232 37.5
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.6e-17 94.0 242 31.8
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.1e-17 93.6 239 33.5
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 2.1e-17 93.6 259 32.8
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 2.1e-17 93.6 243 34.2
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 3.5e-17 92.8 189 34.4
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 3.5e-17 92.8 243 33.3
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 4.6e-17 92.4 239 33.1
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 4.6e-17 92.4 250 32.0
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 7.9e-17 91.7 235 33.2
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 7.9e-17 91.7 237 35.0
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 1.0e-16 91.3 236 32.6
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.0e-16 91.3 238 32.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 1.3e-16 90.9 249 33.3
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.3e-16 90.9 245 34.3
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.8e-16 90.5 253 30.8
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.8e-16 90.5 239 31.0
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 1.8e-16 90.5 242 33.5
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.8e-16 90.5 256 33.2
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 3.0e-16 89.7 250 33.2
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 5.1e-16 89.0 227 30.0
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 8.7e-16 88.2 244 32.0
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.7e-16 88.2 239 33.1
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.1e-15 87.8 227 30.0
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.1e-15 87.8 240 34.6
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.5e-15 87.4 247 35.2
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 1.9e-15 87.0 255 32.5
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 2.5e-15 86.7 242 31.4
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 2.5e-15 86.7 234 35.0
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 4.3e-15 85.9 230 32.6
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 7.4e-15 85.1 239 31.8
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 7.4e-15 85.1 240 32.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 9.6e-15 84.7 240 32.5
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 1.6e-14 84.0 236 32.6
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 2.1e-14 83.6 237 30.8
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 2.1e-14 83.6 242 32.2
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.1e-14 83.6 227 30.0
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 2.1e-14 83.6 227 30.0
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 2.8e-14 83.2 238 32.4
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.7e-14 82.8 238 30.3
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.7e-14 82.8 244 33.6
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 3.7e-14 82.8 252 29.0
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 4.8e-14 82.4 253 29.6
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 4.8e-14 82.4 240 31.7
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 8.1e-14 81.6 194 36.1
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 1.8e-13 80.5 201 33.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 2.4e-13 80.1 238 31.1
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.4e-13 80.1 244 29.1
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 3.1e-13 79.7 164 34.8
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 3.1e-13 79.7 247 30.8
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 4.0e-13 79.3 203 34.5
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.3e-13 79.0 240 32.1
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 1.5e-12 77.4 246 32.9
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.5e-12 75.9 241 27.8
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 5.8e-12 75.5 194 32.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 1.3e-11 74.3 220 29.5
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 1.7e-11 73.9 146 35.6
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 2.2e-11 73.6 227 27.8
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 2.2e-11 73.6 227 27.8
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 2.2e-11 73.6 227 27.8
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 2.2e-11 73.6 225 29.8
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 3.8e-11 72.8 217 31.8
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 4.9e-11 72.4 240 28.3
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 4.9e-11 72.4 221 30.8
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 6.5e-11 72.0 225 31.6
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 8.4e-11 71.6 189 30.7
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 1.9e-10 70.5 243 27.2
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.5e-10 70.1 224 26.8
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.5e-10 70.1 238 30.3
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 5.5e-10 68.9 239 27.6
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 7.1e-10 68.6 221 30.3
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 7.1e-10 68.6 238 29.4
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 9.3e-10 68.2 238 29.4
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 9.3e-10 68.2 239 27.2
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 1.2e-09 67.8 226 30.1
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.7e-09 66.6 223 28.7
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 6.0e-09 65.5 241 28.2
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 1.8e-08 63.9 144 33.3
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 2.3e-08 63.5 214 25.7
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 2.3e-08 63.5 187 31.6
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 3.9e-08 62.8 187 31.0
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.1e-07 61.2 247 28.3
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 4.3e-07 59.3 236 27.1
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 4.3e-07 59.3 233 27.0
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 5.7e-07 58.9 190 30.5
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 7.4e-07 58.5 115 40.0
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 1.6e-06 57.4 190 29.5
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 1.6e-06 57.4 229 28.8
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 2.1e-06 57.0 153 31.4
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 2.8e-06 56.6 234 29.1
RcHm_v2.0_Chr6g0305451 Rosa chinensis HOM05D005081 ORTHO05D005506 4.8e-06 55.8 164 30.5


User provided reference genes

Program Settings