Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb207930 Zea mays HOM05D004903 ORTHO05D005849 1.0e-151 540.0 272 100.0
Os02g0152600 Oryza sativa ssp. japonica HOM05D004903 ORTHO05D005849 3.0e-119 432.2 280 79.3
THA.LOC104810400 Tarenaya hassleriana HOM05D004903 ORTHO05D005849 2.9e-74 282.7 269 54.6
BcaB07g33303 Brassica carinata HOM05D004903 ORTHO05D005849 3.8e-74 282.3 272 54.0
Aqoxy7G00919 Aquilegia oxysepala HOM05D004903 ORTHO05D005849 5.0e-74 282.0 285 50.5
BraA06t23313Z Brassica rapa HOM05D004903 ORTHO05D005849 5.0e-74 282.0 272 54.4
HPP92_000828 Vanilla planifolia HOM05D004903 ORTHO05D005849 8.5e-74 281.2 272 56.2
Thhalv10011709m.g Eutrema salsugineum HOM05D004903 ORTHO05D005849 1.9e-73 280.0 281 52.0
BcaC08g43554 Brassica carinata HOM05D004903 ORTHO05D005849 2.5e-73 279.6 272 54.0
A06p00790 Brassica napus HOM05D004903 ORTHO05D005849 2.5e-73 279.6 272 54.0
C06p09540 Brassica napus HOM05D004903 ORTHO05D005849 9.4e-73 277.7 272 53.7
BolC6t36028H Brassica oleracea HOM05D004903 ORTHO05D005849 9.4e-73 277.7 272 53.7
QL05p000751 Quercus lobata HOM05D004903 ORTHO05D005849 9.4e-73 277.7 272 52.6
PGSC0003DMG400004869 Solanum tuberosum HOM05D004903 ORTHO05D005849 2.1e-72 276.6 278 51.4
Nitab4.5_0006190g0020 Nicotiana tabacum HOM05D004903 ORTHO05D005849 4.7e-72 275.4 276 51.8
Solyc06g063130.3 Solanum lycopersicum HOM05D004903 ORTHO05D005849 4.7e-72 275.4 278 52.2
TAR624G0709 Trochodendron aralioides HOM05D004903 ORTHO05D005849 4.7e-72 275.4 280 49.6
AT1G53760 Arabidopsis thaliana HOM05D004903 ORTHO05D005849 6.1e-72 275.0 275 52.0
CARHR044070 Cardamine hirsuta HOM05D004903 ORTHO05D005849 6.1e-72 275.0 281 52.0
Duzib160G0805 Durio zibethinus HOM05D004903 ORTHO05D005849 6.1e-72 275.0 277 50.9
CAN.G1633.2 Capsicum annuum HOM05D004903 ORTHO05D005849 8.0e-72 274.6 277 51.3
Dinv20374 Davidia involucrata HOM05D004903 ORTHO05D005849 1.0e-71 274.2 281 49.5
QL05p000658 Quercus lobata HOM05D004903 ORTHO05D005849 1.0e-71 274.2 275 52.0
Manes.11G011500 Manihot esculenta HOM05D004903 ORTHO05D005849 1.4e-71 273.9 273 51.3
RcHm_v2.0_Chr2g0148141 Rosa chinensis HOM05D004903 ORTHO05D005849 1.4e-71 273.9 286 51.0
A05p17920 Brassica napus HOM05D004903 ORTHO05D005849 2.3e-71 273.1 272 54.0
DCAR_022636 Daucus carota HOM05D004903 ORTHO05D005849 2.3e-71 273.1 280 50.0
AL1G62450 Arabidopsis lyrata HOM05D004903 ORTHO05D005849 3.0e-71 272.7 274 51.8
CiPaw.01G210600 Carya illinoinensis HOM05D004903 ORTHO05D005849 3.0e-71 272.7 275 52.4
Glyma.07G046600 Glycine max HOM05D004903 ORTHO05D005849 4.0e-71 272.3 269 49.4
Peaxi162Scf00207g01534 Petunia axillaris HOM05D004903 ORTHO05D005849 5.2e-71 271.9 277 50.2
BraA05t20686Z Brassica rapa HOM05D004903 ORTHO05D005849 6.8e-71 271.6 272 53.7
BcaB02g10893 Brassica carinata HOM05D004903 ORTHO05D005849 8.8e-71 271.2 273 52.4
CSS0022789 Camellia sinensis var. sinensis HOM05D004903 ORTHO05D005849 8.8e-71 271.2 278 49.6
Sopen06g022580 Solanum pennellii HOM05D004903 ORTHO05D005849 8.8e-71 271.2 278 51.4
Thecc.06G131400 Theobroma cacao HOM05D004903 ORTHO05D005849 8.8e-71 271.2 284 50.7
ClCG09G001430 Citrullus lanatus HOM05D004903 ORTHO05D005849 2.0e-70 270.0 285 51.2
GSVIVG01016657001 Vitis vinifera HOM05D004903 ORTHO05D005849 2.0e-70 270.0 272 50.4
Hund18627 Selenicereus undatus HOM05D004903 ORTHO05D005849 3.4e-70 269.2 281 49.1
BolC6t36703H Brassica oleracea HOM05D004903 ORTHO05D005849 4.4e-70 268.9 272 52.9
PSO135G0609 Papaver somniferum HOM05D004903 ORTHO05D005849 4.4e-70 268.9 269 49.8
Actinidia25997 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.5e-70 268.1 273 49.1
C06p15280 Brassica napus HOM05D004903 ORTHO05D005849 9.8e-70 267.7 272 52.6
Prupe.3G030200 Prunus persica HOM05D004903 ORTHO05D005849 9.8e-70 267.7 285 49.8
FvH4_6g36070 Fragaria vesca HOM05D004903 ORTHO05D005849 1.7e-69 266.9 284 50.4
FAN09G2808 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.7e-69 266.9 283 51.2
FAN14G1686 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.7e-69 266.9 286 50.3
FAN14G0435 Fragaria x ananassa HOM05D004903 ORTHO05D005849 2.8e-69 266.2 278 51.1
BcaC08g44129 Brassica carinata HOM05D004903 ORTHO05D005849 3.7e-69 265.8 272 52.6
Lj3g0025901 Lotus japonicus HOM05D004903 ORTHO05D005849 3.7e-69 265.8 269 48.0
Carub.0001s4303 Capsella rubella HOM05D004903 ORTHO05D005849 8.3e-69 264.6 275 51.3
Potri.001G161800 Populus trichocarpa HOM05D004903 ORTHO05D005849 8.3e-69 264.6 273 49.8
EL10Ac7g18248 Beta vulgaris HOM05D004903 ORTHO05D005849 1.4e-68 263.8 274 49.6
FAN02G0327 Fragaria x ananassa HOM05D004903 ORTHO05D005849 1.8e-68 263.5 282 50.4
Gohir.A06G142500 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.8e-68 263.5 277 49.8
TWI59G0350 Tripterygium wilfordii HOM05D004903 ORTHO05D005849 1.8e-68 263.5 281 49.1
MD09G1171800 Malus domestica HOM05D004903 ORTHO05D005849 2.4e-68 263.1 286 51.0
AUR62001391 Chenopodium quinoa HOM05D004903 ORTHO05D005849 4.1e-68 262.3 271 49.8
CANSAT56G0172 Cannabis sativa HOM05D004903 ORTHO05D005849 5.4e-68 261.9 276 50.0
PSO724G0850 Papaver somniferum HOM05D004903 ORTHO05D005849 5.4e-68 261.9 269 48.7
CsaV3_7G033900 Cucumis sativus L. HOM05D004903 ORTHO05D005849 7.0e-68 261.5 285 49.8
Sp1g40280 Schrenkiella parvula HOM05D004903 ORTHO05D005849 9.2e-68 261.2 275 50.9
Lalb_Chr17g0343171 Lupinus albus HOM05D004903 ORTHO05D005849 1.2e-67 260.8 269 46.5
SalBow6G3230 Salvia bowleyana HOM05D004903 ORTHO05D005849 1.2e-67 260.8 272 48.9
Eucgr.J02586 Eucalyptus grandis HOM05D004903 ORTHO05D005849 1.6e-67 260.4 280 52.5
Gorai.010G172600 Gossypium raimondii HOM05D004903 ORTHO05D005849 2.7e-67 259.6 277 49.1
Gohir.D06G202400 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.5e-67 258.8 273 50.5
Ciclev10026250m.g Citrus clementina HOM05D004903 ORTHO05D005849 5.9e-67 258.5 278 50.0
Atru.chr1.4170 Acer truncatum HOM05D004903 ORTHO05D005849 1.0e-66 257.7 274 49.3
MBI17_g12875_MAGBIO Magnolia biondii HOM05D004903 ORTHO05D005849 1.0e-66 257.7 269 47.6
Gorai.010G236300 Gossypium raimondii HOM05D004903 ORTHO05D005849 1.7e-66 256.9 273 50.2
Nn8g38503 Nelumbo nucifera HOM05D004903 ORTHO05D005849 1.7e-66 256.9 272 50.0
Glyma.16G015600 Glycine max HOM05D004903 ORTHO05D005849 2.3e-66 256.5 271 47.6
ATR0006G080 Amborella trichopoda HOM05D004903 ORTHO05D005849 2.9e-66 256.1 266 50.4
Lj5A28T47 Lonicera japonica HOM05D004903 ORTHO05D005849 2.9e-66 256.1 335 44.8
Medtr8g023500 Medicago truncatula HOM05D004903 ORTHO05D005849 3.8e-66 255.8 279 47.7
arahy.Tifrunner.gnm1.ann1.97GHXX Arachis hypogaea HOM05D004903 ORTHO05D005849 5.0e-66 255.4 272 47.4
MD17G1155200 Malus domestica HOM05D004903 ORTHO05D005849 6.6e-66 255.0 283 49.1
Cc04_g00600 Coffea canephora HOM05D004903 ORTHO05D005849 1.1e-65 254.2 284 48.2
Migut.I01143 Erythranthe guttata HOM05D004903 ORTHO05D005849 1.1e-65 254.2 273 49.5
Aa31LG10G1530 Aethionema arabicum HOM05D000070 ORTHO05D003301 1.9e-65 253.4 250 52.4
Actinidia24416 Actinidia chinensis HOM05D004903 ORTHO05D005849 7.3e-65 251.5 286 46.5
Sed0027894 Sechium edule HOM05D004903 ORTHO05D005849 7.3e-65 251.5 286 49.0
Psat4g164720 Pisum sativum HOM05D004903 ORTHO05D005849 2.1e-64 250.0 275 45.8
arahy.Tifrunner.gnm1.ann1.M9BVNS Arachis hypogaea HOM05D004903 ORTHO05D005849 1.4e-63 247.3 272 46.0
COL.COLO4_30880 Corchorus olitorius HOM05D004903 ORTHO05D005849 1.4e-63 247.3 224 54.5
Nitab4.5_0010570g0050 Nicotiana tabacum HOM05D004903 ORTHO05D005849 1.8e-63 246.9 273 48.4
arahy.Tifrunner.gnm1.ann1.3XU7EE Arachis hypogaea HOM05D004903 ORTHO05D005849 3.0e-63 246.1 273 46.5
arahy.Tifrunner.gnm1.ann1.AA2XIP Arachis hypogaea HOM05D004903 ORTHO05D005849 4.0e-63 245.7 275 45.1
HanXRQChr12g0360041 Helianthus annuus HOM05D004903 ORTHO05D005849 4.0e-63 245.7 271 48.3
MSTRG.10905 Avicennia marina HOM05D004903 ORTHO05D005849 1.5e-62 243.8 285 46.3
Phvul.010G122300 Phaseolus vulgaris HOM05D004903 ORTHO05D005849 3.4e-62 242.7 274 44.9
Gohir.A06G194700 Gossypium hirsutum HOM05D004903 ORTHO05D005849 4.4e-62 242.3 272 48.9
SGA_v2.0_scaffold71G23946 Striga asiatica HOM05D004903 ORTHO05D005849 7.5e-62 241.5 281 46.6
arahy.Tifrunner.gnm1.ann1.HDKQ14 Arachis hypogaea HOM05D004903 ORTHO05D005849 9.8e-62 241.1 293 43.3
Sc12g0011010 Simmondsia chinensis HOM05D004903 ORTHO05D005849 6.4e-61 238.4 233 53.2
vmacro18714 Vaccinium macrocarpon HOM05D004903 ORTHO05D005849 2.4e-60 236.5 278 44.6
Lsat_1_v5_gn_5_137641 Lactuca sativa HOM05D004903 ORTHO05D005849 3.2e-60 236.1 264 48.5
arahy.Tifrunner.gnm1.ann1.ZQ2A8X Arachis hypogaea HOM05D004903 ORTHO05D005849 9.2e-60 234.6 294 43.9
Dinv37814 Davidia involucrata HOM05D004903 ORTHO05D005849 2.0e-59 233.4 211 53.6
arahy.Tifrunner.gnm1.ann1.5Z4EMJ Arachis hypogaea HOM05D004903 ORTHO05D005849 2.7e-59 233.0 272 44.5
unitig_32.g11002 Utricularia gibba HOM05D004903 ORTHO05D005849 4.6e-59 232.3 278 43.9
Ca_23466_v3 Cicer arietinum L. HOM05D004903 ORTHO05D005849 7.8e-59 231.5 226 50.0
Cpa.g.sc25.203 Carica papaya HOM05D004903 ORTHO05D005849 1.0e-58 231.1 186 57.0
Rhsim08G0245600 Rhododendron simsii HOM05D004903 ORTHO05D005849 2.3e-58 229.9 199 55.3
TPR.G15248 Trifolium pratense HOM05D004903 ORTHO05D005849 3.9e-58 229.2 230 47.8
AUR62025608 Chenopodium quinoa HOM05D004903 ORTHO05D005849 5.0e-58 228.8 257 47.1
Sabra03G0044200 Salix brachista HOM05D004903 ORTHO05D005849 1.5e-57 227.3 306 43.1
Oeu053414.1 Olea europaea HOM05D004903 ORTHO05D005849 7.3e-57 224.9 235 49.4
Hma1.2p1_1999F.1_g310500 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 4.7e-56 222.2 184 56.5
VMungo0331G0875 Vigna mungo HOM05D004903 ORTHO05D005849 3.1e-55 219.5 224 48.7
Gorai.011G054300 Gossypium raimondii HOM05D004903 ORTHO05D005849 4.0e-55 219.2 197 54.3
CDE06G0378 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 6.8e-55 218.4 226 47.8
MELO3C024303.2 Cucumis melo HOM05D004903 ORTHO05D005849 8.9e-55 218.0 194 55.2
ECA234G0009 Erigeron canadensis HOM05D004903 ORTHO05D005849 8.9e-55 218.0 214 53.3
Cfa003452 Carpinus fangiana HOM05D004903 ORTHO05D005849 1.3e-53 214.2 209 51.7
Oeu019513.1 Olea europaea HOM05D004903 ORTHO05D005849 2.2e-53 213.4 191 54.5
Sed0021101 Sechium edule HOM05D004903 ORTHO05D005849 1.4e-52 210.7 211 52.6
Sabra01G0130700 Salix brachista HOM05D004903 ORTHO05D005849 1.9e-52 210.3 299 42.1
CDE04G1042 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 9.2e-52 208.0 230 47.0
Hma1.2p1_0090F.1_g045680 Hydrangea macrophylla HOM05D004903 ORTHO05D005849 1.6e-51 207.2 218 49.5
Mapoly0021s0048 Marchantia polymorpha HOM05D004903 ORTHO05D005849 6.6e-50 201.8 281 41.3
Actinidia31143 Actinidia chinensis HOM05D004903 ORTHO05D005849 2.1e-48 196.8 207 48.8
AagrBONN_evm.TU.Sc2ySwM_228.2429 Anthoceros agrestis HOM05D004903 ORTHO05D005849 6.8e-47 191.8 258 43.0
Gohir.A10G050050 Gossypium hirsutum HOM05D004903 ORTHO05D005849 2.9e-45 186.4 259 43.2
Gohir.D10G050650 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.9e-36 157.1 162 47.5
CBR_g34164 Chara braunii HOM05D004903 ORTHO05D005849 2.1e-35 153.7 227 39.6
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 5.8e-30 135.6 213 41.3
arahy.Tifrunner.gnm1.ann1.AT31DH Arachis hypogaea HOM05D004903 ORTHO05D005849 1.1e-28 131.3 131 50.4
Haze_16148 Corylus avellana HOM05D003205 ORTHO05D003746 1.4e-28 131.0 261 36.0
arahy.Tifrunner.gnm1.ann1.RS9BE1 Arachis hypogaea HOM05D004903 ORTHO05D005849 2.4e-28 130.2 95 61.1
Pp3c13_9790 Physcomitrium patens HOM05D004903 ORTHO05D005849 6.0e-27 125.6 268 29.1
Haze_16144 Corylus avellana HOM05D003205 ORTHO05D003746 7.8e-27 125.2 261 34.9
BcaB02g07096 Brassica carinata HOM05D000219 ORTHO05D000226 6.6e-26 122.1 117 52.1
BcaB07g32153 Brassica carinata HOM05D004903 ORTHO05D005849 8.7e-26 121.7 119 51.3
Gohir.D06G148232 Gossypium hirsutum HOM05D004903 ORTHO05D005849 6.2e-24 115.5 112 48.2
Cre08.g358557 Chlamydomonas reinhardtii HOM05D004903 ORTHO05D005849 7.4e-17 92.0 194 30.4
SEGI_28585 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.6e-16 89.7 121 41.3
SEGI_38260 Sequoiadendron giganteum HOM05D004903 ORTHO05D005849 3.6e-16 89.7 130 40.0
CDE06G0441 Ceratophyllum demersum HOM05D004903 ORTHO05D005849 1.5e-14 84.3 84 45.2
PRCOL_00005128 Prasinoderma coloniale HOM05D004903 ORTHO05D005849 1.4e-12 77.8 227 31.7
Gohir.D02G109866 Gossypium hirsutum HOM05D004903 ORTHO05D005849 1.6e-11 74.3 86 41.9
Glyma.16G014900 Glycine max HOM05D004903 ORTHO05D005849 8.1e-08 62.0 95 37.9
MCO07G235 Micromonas commoda HOM05D004903 ORTHO05D005849 6.9e-07 58.9 110 29.1
arahy.Tifrunner.gnm1.ann1.1E2DFU Arachis hypogaea HOM05D001485 ORTHO05D005849 1.5e-06 57.8 47 53.2


User provided reference genes

Program Settings