Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 2.0e-55 219.2 136 100.0
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 3.9e-43 178.3 119 89.9
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 2.8e-41 172.2 130 81.5
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 2.4e-40 169.1 116 84.5
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 1.5e-39 166.4 116 88.8
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 1.7e-38 162.9 132 78.8
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 2.9e-38 162.2 90 93.3
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 2.5e-34 149.1 119 71.4
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 7.6e-23 110.9 93 66.7
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 3.3e-18 95.5 81 66.7
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 4.3e-18 95.1 81 65.4
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 3.7e-17 92.0 105 55.2
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 4.8e-17 91.7 84 66.7
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 2.4e-16 89.4 84 64.3
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 5.3e-16 88.2 81 65.4
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 6.9e-16 87.8 81 65.4
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 9.1e-16 87.4 96 52.1
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 1.2e-15 87.0 84 56.0
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 1.5e-15 86.7 94 57.4
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 2.0e-15 86.3 89 59.6
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 2.6e-15 85.9 96 56.2
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 5.9e-15 84.7 99 51.5
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 7.7e-15 84.3 89 59.6
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 1.0e-14 84.0 83 62.7
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.0e-14 84.0 94 54.3
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.3e-14 83.6 94 52.1
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.3e-14 83.6 82 62.2
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 1.7e-14 83.2 99 50.5
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 1.7e-14 83.2 84 58.3
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 2.9e-14 82.4 83 61.4
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 2.9e-14 82.4 88 58.0
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 2.9e-14 82.4 100 48.0
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.9e-14 82.4 95 53.7
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.9e-14 82.4 95 53.7
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 6.5e-14 81.3 85 57.6
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 8.5e-14 80.9 113 48.7
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 8.5e-14 80.9 100 48.0
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 1.1e-13 80.5 99 49.5
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 1.1e-13 80.5 108 46.3
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 1.1e-13 80.5 96 54.2
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 1.4e-13 80.1 100 52.0
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 1.9e-13 79.7 75 58.7
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.9e-13 79.7 87 56.3
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 2.5e-13 79.3 105 45.7
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 2.5e-13 79.3 85 55.3
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 3.2e-13 79.0 90 53.3
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 3.2e-13 79.0 99 50.5
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 4.2e-13 78.6 83 56.6
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 5.5e-13 78.2 83 60.2
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 5.5e-13 78.2 94 50.0
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 5.5e-13 78.2 92 54.3
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 5.5e-13 78.2 87 52.9
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 9.4e-13 77.4 85 56.5
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 1.2e-12 77.0 105 44.8
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 1.2e-12 77.0 105 44.8
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 1.2e-12 77.0 105 44.8
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 1.2e-12 77.0 84 57.1
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 1.2e-12 77.0 81 54.3
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 1.2e-12 77.0 100 48.0
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 1.6e-12 76.6 93 51.6
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 1.6e-12 76.6 84 56.0
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 2.1e-12 76.3 102 48.0
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 2.7e-12 75.9 105 45.7
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.7e-12 75.9 98 48.0
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 3.6e-12 75.5 105 43.8
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 3.6e-12 75.5 88 52.3
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 4.7e-12 75.1 83 57.8
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 4.7e-12 75.1 88 55.7
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 4.7e-12 75.1 88 55.7
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 6.1e-12 74.7 82 56.1
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 6.1e-12 74.7 83 59.0
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 6.1e-12 74.7 88 55.7
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 7.9e-12 74.3 86 54.7
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 7.9e-12 74.3 88 54.5
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.0e-11 73.9 83 54.2
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.0e-11 73.9 84 54.8
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 1.8e-11 73.2 106 45.3
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.8e-11 73.2 83 57.8
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.8e-11 73.2 83 57.8
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 1.8e-11 73.2 84 57.1
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 1.8e-11 73.2 90 51.1
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 2.3e-11 72.8 98 51.0
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 3.0e-11 72.4 88 46.6
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 3.9e-11 72.0 75 58.7
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 3.9e-11 72.0 83 57.8
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.9e-11 72.0 83 56.6
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 3.9e-11 72.0 83 56.6
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 3.9e-11 72.0 83 50.6
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 8.8e-11 70.9 89 52.8
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 8.8e-11 70.9 83 51.8
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 8.8e-11 70.9 88 50.0
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 8.8e-11 70.9 99 45.5
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 1.5e-10 70.1 100 45.0
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 1.5e-10 70.1 84 52.4
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 1.5e-10 70.1 84 52.4
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.6e-10 69.3 87 48.3
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 2.6e-10 69.3 88 47.7
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 2.6e-10 69.3 76 53.9
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.3e-10 68.9 101 44.6
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 3.3e-10 68.9 104 42.3
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 3.3e-10 68.9 75 56.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 3.3e-10 68.9 73 53.4
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 3.3e-10 68.9 86 50.0
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 3.3e-10 68.9 108 41.7
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 3.3e-10 68.9 108 41.7
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 5.7e-10 68.2 103 42.7
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 5.7e-10 68.2 72 52.8
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 9.7e-10 67.4 73 53.4
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 9.7e-10 67.4 86 50.0
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 1.7e-09 66.6 93 44.1
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 2.2e-09 66.2 111 40.5
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 3.7e-09 65.5 87 49.4
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 1.1e-08 63.9 74 50.0
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 1.1e-08 63.9 124 41.9
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 1.1e-08 63.9 86 48.8
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 4.1e-08 62.0 118 40.7
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 7.0e-08 61.2 101 40.6
Zm00001eb380340 Zea mays HOM05D005827 ORTHO05D444512 1.2e-07 60.5 30 96.7
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 1.5e-07 60.1 109 41.3
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 4.5e-07 58.5 98 39.8
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.2e-06 56.2 83 43.4
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.2e-06 56.2 67 47.8
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 2.9e-06 55.8 57 63.2
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 3.8e-06 55.5 90 41.1
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 3.8e-06 55.5 46 58.7
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 3.8e-06 55.5 90 38.9


User provided reference genes

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