Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb207340 Zea mays HOM05D007007 ORTHO05D008335 6.2e-54 213.8 100 100.0
Zm00001eb350940 Zea mays HOM05D007007 ORTHO05D008335 6.2e-54 213.8 100 100.0
Zm00001eb237670 Zea mays HOM05D007007 ORTHO05D008335 1.2e-52 209.5 100 98.0
Zm00001eb327980 Zea mays HOM05D007007 ORTHO05D008335 5.5e-10 67.8 41 82.9
Os07g0626400 Oryza sativa ssp. japonica HOM05D007007 ORTHO05D008335 9.3e-10 67.0 41 78.0
TAR628G0829 Trochodendron aralioides HOM05D000382 ORTHO05D000391 1.8e-08 62.8 41 73.2
CiPaw.05G230900 Carya illinoinensis HOM05D007007 ORTHO05D008335 3.9e-08 61.6 41 73.2
CiPaw.06G023600 Carya illinoinensis HOM05D007007 ORTHO05D008335 3.9e-08 61.6 41 73.2
PSO541G0161 Papaver somniferum HOM05D007007 ORTHO05D008335 3.9e-08 61.6 41 75.6
PSO675G2451 Papaver somniferum HOM05D007007 ORTHO05D008335 3.9e-08 61.6 41 75.6
Atru.chr13.1299 Acer truncatum HOM05D007007 ORTHO05D008335 6.7e-08 60.8 41 73.2
ClCG08G010830 Citrullus lanatus HOM05D007007 ORTHO05D008335 6.7e-08 60.8 41 73.2
TAR381G0384 Trochodendron aralioides HOM05D007007 ORTHO05D008335 6.7e-08 60.8 41 70.7
MELO3C011379.2 Cucumis melo HOM05D007007 ORTHO05D008335 8.7e-08 60.5 52 61.5
Aqoxy6G00506 Aquilegia oxysepala HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 73.2
arahy.Tifrunner.gnm1.ann1.4WA5US Arachis hypogaea HOM05D000382 ORTHO05D008335 1.1e-07 60.1 41 70.7
arahy.Tifrunner.gnm1.ann1.PLAH4H Arachis hypogaea HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 70.7
MSTRG.24958 Avicennia marina HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 70.7
Haze_00544 Corylus avellana HOM05D007007 ORTHO05D008335 1.1e-07 60.1 43 67.4
Dinv13068 Davidia involucrata HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 68.3
Gohir.A01G187200 Gossypium hirsutum HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 73.2
Gohir.D01G182500 Gossypium hirsutum HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 73.2
Gorai.002G219900 Gossypium raimondii HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 73.2
PGR042G1361 Punica granatum HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 70.7
Sed0027281 Sechium edule HOM05D007007 ORTHO05D008335 1.1e-07 60.1 41 70.7
Cpa.g.sc49.113 Carica papaya HOM05D007007 ORTHO05D008335 1.5e-07 59.7 41 70.7
Cc10_g06060 Coffea canephora HOM05D007007 ORTHO05D008335 1.5e-07 59.7 41 70.7
CsaV3_6G035710 Cucumis sativus L. HOM05D007007 ORTHO05D008335 1.5e-07 59.7 41 70.7
Manes.18G071800 Manihot esculenta HOM05D007007 ORTHO05D008335 1.5e-07 59.7 41 70.7
ATR0564G456 Amborella trichopoda HOM05D007007 ORTHO05D008335 1.9e-07 59.3 41 70.7
Dinv44721 Davidia involucrata HOM05D007007 ORTHO05D008335 1.9e-07 59.3 41 70.7
Glyma.04G254700 Glycine max HOM05D007007 ORTHO05D008335 1.9e-07 59.3 41 73.2
CDE03G0075 Ceratophyllum demersum HOM05D007007 ORTHO05D008335 2.5e-07 58.9 42 64.3
Migut.N02916 Erythranthe guttata HOM05D007007 ORTHO05D008335 2.5e-07 58.9 41 68.3
Lj1g0002230 Lotus japonicus HOM05D007007 ORTHO05D008335 2.5e-07 58.9 41 70.7
Lalb_Chr08g0241781 Lupinus albus HOM05D007007 ORTHO05D008335 2.5e-07 58.9 42 69.0
MD08G1174100 Malus domestica HOM05D007007 ORTHO05D008335 2.5e-07 58.9 41 68.3
MD15G1360500 Malus domestica HOM05D007007 ORTHO05D008335 2.5e-07 58.9 41 68.3
Sc26g0002350 Simmondsia chinensis HOM05D007007 ORTHO05D008335 2.5e-07 58.9 40 75.0
Zm00001eb414200 Zea mays HOM05D007007 ORTHO05D008335 2.5e-07 58.9 41 68.3
arahy.Tifrunner.gnm1.ann1.J1JBQA Arachis hypogaea HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 68.3
Cfa015946 Carpinus fangiana HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 68.3
Ca_25771_v3 Cicer arietinum L. HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 70.7
Ciclev10002163m.g Citrus clementina HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 70.7
Peaxi162Scf00160g01640 Petunia axillaris HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 70.7
Potri.002G090600 Populus trichocarpa HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 68.3
Prupe.1G508000 Prunus persica HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 70.7
QL12p035500 Quercus lobata HOM05D007007 ORTHO05D008335 3.3e-07 58.5 41 70.7
Actinidia15631 Actinidia chinensis HOM05D007007 ORTHO05D008335 4.3e-07 58.2 41 65.9
Aqoxy5G00983 Aquilegia oxysepala HOM05D000003 ORTHO05D008335 4.3e-07 58.2 40 72.5
CAN.G47.18 Capsicum annuum HOM05D007007 ORTHO05D008335 4.3e-07 58.2 41 65.9
Eucgr.F03733 Eucalyptus grandis HOM05D007007 ORTHO05D008335 4.3e-07 58.2 41 70.7
Glyma.06G107400 Glycine max HOM05D007007 ORTHO05D008335 4.3e-07 58.2 41 70.7
Nitab4.5_0006745g0010 Nicotiana tabacum HOM05D007007 ORTHO05D008335 4.3e-07 58.2 41 68.3
Hund26658 Selenicereus undatus HOM05D007007 ORTHO05D008335 4.3e-07 58.2 40 72.5
GSVIVG01008959001 Vitis vinifera HOM05D007007 ORTHO05D008335 4.3e-07 58.2 41 68.3
EL10Ac1g01704 Beta vulgaris HOM05D007007 ORTHO05D008335 5.7e-07 57.8 40 72.5
Lj4A109T45 Lonicera japonica HOM05D007007 ORTHO05D008335 5.7e-07 57.8 41 63.4
Nitab4.5_0000425g0200 Nicotiana tabacum HOM05D007007 ORTHO05D008335 5.7e-07 57.8 41 68.3
RcHm_v2.0_Chr7g0240411 Rosa chinensis HOM05D007007 ORTHO05D008335 5.7e-07 57.8 41 65.9
Solyc12g056850.2 Solanum lycopersicum HOM05D007007 ORTHO05D008335 5.7e-07 57.8 41 68.3
THA.LOC104800169 Tarenaya hassleriana HOM05D007007 ORTHO05D008335 5.7e-07 57.8 41 68.3
TPR.G32949 Trifolium pratense HOM05D007007 ORTHO05D008335 5.7e-07 57.8 41 68.3
Zm00001eb225930 Zea mays HOM05D007007 ORTHO05D008335 5.7e-07 57.8 47 63.8
CANSAT01G1447 Cannabis sativa HOM05D007007 ORTHO05D008335 7.4e-07 57.4 41 63.4
Duzib041G0122 Durio zibethinus HOM05D007007 ORTHO05D008335 7.4e-07 57.4 40 72.5
Lsat_1_v5_gn_6_101981 Lactuca sativa HOM05D007007 ORTHO05D008335 7.4e-07 57.4 41 68.3
Nn1g05208 Nelumbo nucifera HOM05D007007 ORTHO05D008335 7.4e-07 57.4 41 65.9
Phvul.009G026800 Phaseolus vulgaris HOM05D007007 ORTHO05D008335 7.4e-07 57.4 40 72.5
Psat5g136560 Pisum sativum HOM05D007007 ORTHO05D008335 7.4e-07 57.4 41 70.7
Rhsim06G0087100 Rhododendron simsii HOM05D007007 ORTHO05D008335 7.4e-07 57.4 41 68.3
PGSC0003DMG400016952 Solanum tuberosum HOM05D007007 ORTHO05D008335 7.4e-07 57.4 41 68.3
SGA_v2.0_scaffold28G11941 Striga asiatica HOM05D001694 ORTHO05D000248 7.4e-07 57.4 41 65.9
Thecc.08G115100 Theobroma cacao HOM05D007007 ORTHO05D008335 7.4e-07 57.4 40 72.5
vmacro21211 Vaccinium macrocarpon HOM05D007007 ORTHO05D008335 7.4e-07 57.4 41 68.3
AL2G38190 Arabidopsis lyrata HOM05D007007 ORTHO05D008335 9.6e-07 57.0 41 65.9
CSS0030134 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 9.6e-07 57.0 41 68.3
Carub.0002s2481 Capsella rubella HOM05D007007 ORTHO05D008335 9.6e-07 57.0 41 65.9
DCAR_009583 Daucus carota HOM05D007007 ORTHO05D008335 9.6e-07 57.0 41 65.9
ECA246G4837 Erigeron canadensis HOM05D000382 ORTHO05D008335 9.6e-07 57.0 41 68.3
Sopen12g029530 Solanum pennellii HOM05D007007 ORTHO05D008335 9.6e-07 57.0 41 68.3
BcaC08g45443 Brassica carinata HOM05D007007 ORTHO05D008335 1.3e-06 56.6 41 65.9
C06p30730 Brassica napus HOM05D000382 ORTHO05D008335 1.3e-06 56.6 41 65.9
A07p27780 Brassica napus HOM05D000382 ORTHO05D008335 1.6e-06 56.2 41 65.9
BraA07t30417Z Brassica rapa HOM05D000382 ORTHO05D008335 1.6e-06 56.2 41 65.9
CSS0021349 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 1.6e-06 56.2 41 68.3
Thhalv10018996m.g Eutrema salsugineum HOM05D007007 ORTHO05D008335 1.6e-06 56.2 41 65.9
FvH4_5g38391 Fragaria vesca HOM05D007007 ORTHO05D008335 1.6e-06 56.2 41 65.9
Hma1.2p1_1060F.1_g253190 Hydrangea macrophylla HOM05D007007 ORTHO05D008335 1.6e-06 56.2 41 68.3
VMungo1309G1520 Vigna mungo HOM05D007007 ORTHO05D008335 1.6e-06 56.2 40 70.0
CARHR071400 Cardamine hirsuta HOM05D007007 ORTHO05D008335 2.1e-06 55.8 41 63.4
AUR62043509 Chenopodium quinoa HOM05D007007 ORTHO05D008335 2.1e-06 55.8 40 67.5
FAN04G0256 Fragaria x ananassa HOM05D007007 ORTHO05D008335 2.1e-06 55.8 41 65.9
FAN08G0847 Fragaria x ananassa HOM05D000382 ORTHO05D008335 2.1e-06 55.8 41 65.9
FAN13G0083 Fragaria x ananassa HOM05D000382 ORTHO05D008335 2.1e-06 55.8 41 65.9
FAN18G4539 Fragaria x ananassa HOM05D000382 ORTHO05D008335 2.1e-06 55.8 41 65.9
Oeu035395.1 Olea europaea HOM05D007007 ORTHO05D008335 2.1e-06 55.8 41 65.9
Aa31LG4G8000 Aethionema arabicum HOM05D007007 ORTHO05D008335 2.8e-06 55.5 41 63.4
HanXRQChr05g0162301 Helianthus annuus HOM05D007007 ORTHO05D008335 2.8e-06 55.5 41 65.9
Sp5g33080 Schrenkiella parvula HOM05D007007 ORTHO05D008335 2.8e-06 55.5 41 65.9
unitig_578.g16208 Utricularia gibba HOM05D007007 ORTHO05D008335 2.8e-06 55.5 41 65.9
BcaB02g07139 Brassica carinata HOM05D007007 ORTHO05D008335 3.7e-06 55.1 41 63.4
CSS0009195 Camellia sinensis var. sinensis HOM05D007007 ORTHO05D008335 3.7e-06 55.1 42 64.3
TWI12G0615 Tripterygium wilfordii HOM05D007007 ORTHO05D008335 3.7e-06 55.1 41 63.4
Medtr3g073560 Medicago truncatula HOM05D000382 ORTHO05D008335 4.8e-06 54.7 40 67.5
Actinidia10285 Actinidia chinensis HOM05D007007 ORTHO05D008335 6.2e-06 54.3 41 61.0
Ah.05g168490 Amaranthus hybridus HOM05D007007 ORTHO05D008335 6.2e-06 54.3 40 67.5
AUR62022326 Chenopodium quinoa HOM05D007007 ORTHO05D008335 6.2e-06 54.3 40 65.0
AT1G77930 Arabidopsis thaliana HOM05D007007 ORTHO05D008335 8.2e-06 53.9 41 63.4


User provided reference genes

Program Settings