Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb206500 Zea mays HOM05D006421 ORTHO05D008268 5.4e-275 951.0 772 100.0
Os02g0186400 Oryza sativa ssp. japonica HOM05D006421 ORTHO05D008268 1.3e-114 418.3 765 66.5
Eucgr.C01728 Eucalyptus grandis HOM05D006421 ORTHO05D008268 1.2e-43 182.6 721 42.3
TWI34G1016 Tripterygium wilfordii HOM05D006421 ORTHO05D008268 2.5e-33 148.3 723 44.4
FAN24G1512 Fragaria x ananassa HOM05D006421 ORTHO05D008268 5.5e-33 147.1 719 42.1
FAN20G2434 Fragaria x ananassa HOM05D006421 ORTHO05D008268 1.2e-32 146.0 715 36.2
Hma1.2p1_0243F.1_g100900 Hydrangea macrophylla HOM05D006421 ORTHO05D008268 2.3e-31 141.7 721 46.0
FAN27G1287 Fragaria x ananassa HOM05D006421 ORTHO05D008268 3.9e-31 141.0 715 38.3
FAN15G0163 Fragaria x ananassa HOM05D006421 ORTHO05D008268 5.1e-31 140.6 755 38.0
Nn8g39522 Nelumbo nucifera HOM05D006421 ORTHO05D008268 5.1e-31 140.6 734 48.2
CiPaw.07G224100 Carya illinoinensis HOM05D006421 ORTHO05D008268 6.7e-31 140.2 721 46.9
Gohir.A07G028900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 9.7e-30 136.3 724 42.1
Potri.006G255800 Populus trichocarpa HOM05D006421 ORTHO05D008268 2.8e-29 134.8 720 45.8
Manes.16G122900 Manihot esculenta HOM05D006421 ORTHO05D008268 1.5e-27 129.0 726 42.4
Actinidia15670 Actinidia chinensis HOM05D006421 ORTHO05D008268 4.5e-27 127.5 711 33.1
Gorai.001G034500 Gossypium raimondii HOM05D006421 ORTHO05D008268 5.9e-27 127.1 724 36.6
Gohir.D07G032900 Gossypium hirsutum HOM05D006421 ORTHO05D008268 1.0e-26 126.3 724 41.0
PSO170G2190 Papaver somniferum HOM05D006421 ORTHO05D008268 5.0e-26 124.0 487 36.3
Duzib168G2139 Durio zibethinus HOM05D006421 ORTHO05D008268 1.4e-25 122.5 724 44.9
FvH4_2g28941 Fragaria vesca HOM05D006421 ORTHO05D008268 1.9e-25 122.1 719 41.2
RcHm_v2.0_Chr6g0297771 Rosa chinensis HOM05D006421 ORTHO05D008268 1.9e-25 122.1 721 45.8
Thhalv10024464m.g Eutrema salsugineum HOM05D006421 ORTHO05D008268 2.7e-24 118.2 724 43.4
Lj8P705T28 Lonicera japonica HOM05D006421 ORTHO05D008268 3.6e-24 117.9 721 39.7
EL10Ac2g04201 Beta vulgaris HOM05D006421 ORTHO05D008268 4.6e-24 117.5 683 38.9
AT4G32190 Arabidopsis thaliana HOM05D006421 ORTHO05D008268 1.0e-23 116.3 730 40.0
Hund04507 Selenicereus undatus HOM05D006421 ORTHO05D008268 2.3e-23 115.2 743 43.9
Psat6g029040 Pisum sativum HOM05D006421 ORTHO05D008268 3.9e-23 114.4 488 34.8
C01p06780 Brassica napus HOM05D006421 ORTHO05D008268 5.1e-23 114.0 477 36.1
BolC1t00672H Brassica oleracea HOM05D006421 ORTHO05D008268 5.1e-23 114.0 477 36.1
Dinv08633 Davidia involucrata HOM05D006421 ORTHO05D008268 5.1e-23 114.0 725 44.8
AUR62031532 Chenopodium quinoa HOM05D006421 ORTHO05D008268 6.7e-23 113.6 739 31.7
BcaC09g52004 Brassica carinata HOM05D006421 ORTHO05D008268 3.3e-22 111.3 473 35.7
Sopen08g011590 Solanum pennellii HOM05D006421 ORTHO05D008268 1.1e-20 106.3 724 33.0
AL7G19640 Arabidopsis lyrata HOM05D006421 ORTHO05D008268 1.5e-19 102.4 727 39.8
A01p06150 Brassica napus HOM05D006421 ORTHO05D008268 2.6e-19 101.7 456 32.5
Nitab4.5_0002408g0020 Nicotiana tabacum HOM05D006421 ORTHO05D008268 2.6e-19 101.7 724 46.5
BcaNung03144 Brassica carinata HOM05D006421 ORTHO05D008268 3.4e-19 101.3 713 43.8
Duzib187G1366 Durio zibethinus HOM05D006421 ORTHO05D008268 3.4e-19 101.3 727 40.3
CAN.G117.5 Capsicum annuum HOM05D006421 ORTHO05D008268 7.7e-19 100.1 717 35.3
DCAR_001538 Daucus carota HOM05D006421 ORTHO05D008268 7.7e-19 100.1 490 29.6
Solyc08g022030.3 Solanum lycopersicum HOM05D006421 ORTHO05D008268 2.2e-18 98.6 724 32.3
arahy.Tifrunner.gnm1.ann1.658XMK Arachis hypogaea HOM05D006421 ORTHO05D008268 5.0e-18 97.4 340 42.9
Cc08_g00500 Coffea canephora HOM05D006421 ORTHO05D008268 3.2e-17 94.7 764 38.6
Haze_21503 Corylus avellana HOM05D006421 ORTHO05D008268 3.2e-17 94.7 578 36.7
ECA246G1400 Erigeron canadensis HOM05D002695 ORTHO05D002964 7.2e-17 93.6 405 54.1
TAR636G0610 Trochodendron aralioides HOM05D006421 ORTHO05D008268 7.2e-17 93.6 117 45.3
SalBow4G3177 Salvia bowleyana HOM05D006421 ORTHO05D008268 6.1e-16 90.5 715 44.5
Sp7g29980 Schrenkiella parvula HOM05D006421 ORTHO05D008268 6.1e-16 90.5 476 31.1
Thecc.09G023300 Theobroma cacao HOM05D006421 ORTHO05D008268 6.1e-16 90.5 481 35.1
arahy.Tifrunner.gnm1.ann1.1F1BFK Arachis hypogaea HOM05D006421 ORTHO05D008268 1.0e-15 89.7 456 34.6
Migut.A00033 Erythranthe guttata HOM05D006421 ORTHO05D008268 3.0e-15 88.2 488 31.8
Oeu053117.1 Olea europaea HOM05D006421 ORTHO05D008268 3.9e-15 87.8 481 31.6
Rhsim07G0159500 Rhododendron simsii HOM05D006421 ORTHO05D008268 3.9e-15 87.8 484 32.9
Sabra06G0200100 Salix brachista HOM05D006421 ORTHO05D008268 3.9e-15 87.8 719 43.5
PGSC0003DMG400004306 Solanum tuberosum HOM05D006421 ORTHO05D008268 6.7e-15 87.0 724 36.9
Medtr1g012620 Medicago truncatula HOM05D006421 ORTHO05D008268 8.8e-15 86.7 485 33.0
Sed0003255 Sechium edule HOM05D006421 ORTHO05D008268 5.7e-14 84.0 111 42.3
ATR0800G069 Amborella trichopoda HOM05D006421 ORTHO05D008268 1.3e-13 82.8 109 46.8
Carub.0007s0836 Capsella rubella HOM05D006421 ORTHO05D008268 2.8e-13 81.6 721 41.1
Nitab4.5_0002042g0070 Nicotiana tabacum HOM05D006421 ORTHO05D008268 2.8e-13 81.6 724 45.7
TAR625G1222 Trochodendron aralioides HOM05D006421 ORTHO05D008268 2.8e-13 81.6 734 43.3
Cfa013134 Carpinus fangiana HOM05D006421 ORTHO05D008268 4.8e-13 80.9 731 43.2
Atru.chr7.2443 Acer truncatum HOM05D006421 ORTHO05D008268 6.3e-13 80.5 102 44.1
CARHR240120 Cardamine hirsuta HOM05D006421 ORTHO05D008268 1.1e-12 79.7 466 30.9
TAR636G3563 Trochodendron aralioides HOM05D006421 ORTHO05D008268 1.1e-12 79.7 242 27.7
GSVIVG01035871001 Vitis vinifera HOM05D006421 ORTHO05D008268 1.8e-12 79.0 725 42.5
BraA10t43273Z Brassica rapa HOM05D006421 ORTHO05D008268 6.9e-12 77.0 159 29.6
PSO017G0123 Papaver somniferum HOM05D006421 ORTHO05D008268 6.9e-12 77.0 491 37.7
C02p24100 Brassica napus HOM05D006421 ORTHO05D008268 1.2e-11 76.3 444 32.9
THA.LOC104818618 Tarenaya hassleriana HOM05D006421 ORTHO05D008268 1.5e-11 75.9 730 39.6
PGR031G1896 Punica granatum HOM05D006421 ORTHO05D008268 4.5e-11 74.3 112 37.5
QL02p021457 Quercus lobata HOM05D006421 ORTHO05D008268 5.9e-11 73.9 729 43.1
Actinidia14601 Actinidia chinensis HOM05D006421 ORTHO05D008268 1.3e-10 72.8 241 28.2
ClCG05G016810 Citrullus lanatus HOM05D006421 ORTHO05D008268 1.3e-10 72.8 102 38.2
Cpa.g.sc217.10 Carica papaya HOM05D006421 ORTHO05D008268 6.5e-10 70.5 314 54.8
vmacro05173 Vaccinium macrocarpon HOM05D006421 ORTHO05D008268 1.4e-09 69.3 710 33.8
MSTRG.11610 Avicennia marina HOM05D006421 ORTHO05D008268 1.9e-09 68.9 721 36.9
CSS0036831 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 3.2e-09 68.2 116 38.8
TPR.G15679 Trifolium pratense HOM05D006421 ORTHO05D008268 4.2e-09 67.8 484 29.8
CSS0048874 Camellia sinensis var. sinensis HOM05D006421 ORTHO05D008268 5.5e-09 67.4 116 37.1
BcaC03g14918 Brassica carinata HOM05D006421 ORTHO05D008268 7.2e-09 67.0 406 32.0
COL.COLO4_18870 Corchorus olitorius HOM05D006421 ORTHO05D008268 9.4e-09 66.6 101 36.6
MELO3C003706.2 Cucumis melo HOM05D006421 ORTHO05D008268 9.4e-09 66.6 493 31.6
HanXRQChr16g0510771 Helianthus annuus HOM05D006421 ORTHO05D008268 9.4e-09 66.6 378 36.5
SEGI_28581 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 9.4e-09 66.6 226 27.4
Peaxi162Scf01131g00117 Petunia axillaris HOM05D006421 ORTHO05D008268 1.6e-08 65.9 367 55.9
MD15G1126300 Malus domestica HOM05D006421 ORTHO05D008268 3.6e-08 64.7 725 36.4
CANSAT35G0532 Cannabis sativa HOM05D006421 ORTHO05D008268 6.1e-08 63.9 92 41.3
SEGI_00734 Sequoiadendron giganteum HOM05D006421 ORTHO05D008268 6.1e-08 63.9 119 37.0
Lj5g0021919 Lotus japonicus HOM05D006421 ORTHO05D008268 1.0e-07 63.2 225 24.4
CDE07G0223 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 1.4e-07 62.8 100 38.0
unitig_748.g8080 Utricularia gibba HOM05D006421 ORTHO05D008268 3.9e-07 61.2 83 39.8
AUR62012410 Chenopodium quinoa HOM05D006421 ORTHO05D008268 5.2e-07 60.8 739 36.4
SGA_v2.0_scaffold20G09108 Striga asiatica HOM05D002695 ORTHO05D002964 8.8e-07 60.1 717 32.9
CsaV3_3G046330 Cucumis sativus L. HOM05D006421 ORTHO05D008268 3.3e-06 58.2 254 32.7
CDE06G1662 Ceratophyllum demersum HOM05D006421 ORTHO05D008268 5.7e-06 57.4 64 45.3
Lalb_Chr24g0402151 Lupinus albus HOM05D006421 ORTHO05D008268 9.7e-06 56.6 510 45.1


User provided reference genes

Program Settings