Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb206380 Zea mays HOM05D003199 ORTHO05D003528 2.7e-55 218.8 140 100.0
Zm00001eb234790 Zea mays HOM05D003199 ORTHO05D003528 1.2e-50 203.4 140 92.9
Os02g0189000 Oryza sativa ssp. japonica HOM05D003199 ORTHO05D003528 3.4e-34 148.7 145 77.2
Cc07_g00740 Coffea canephora HOM05D003199 ORTHO05D003528 2.6e-10 69.3 94 62.8
PGR083G2021 Punica granatum HOM05D003199 ORTHO05D003528 1.0e-09 67.4 90 61.1
THA.LOC104825617 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 1.3e-09 67.0 119 52.1
Glyma.19G090000 Glycine max HOM05D003199 ORTHO05D003528 2.2e-09 66.2 89 57.3
Lalb_Chr02g0157721 Lupinus albus HOM05D003199 ORTHO05D003528 2.2e-09 66.2 128 35.2
Glyma.17G181000 Glycine max HOM05D003199 ORTHO05D003528 3.8e-09 65.5 89 47.2
DCAR_002949 Daucus carota HOM05D003199 ORTHO05D003528 8.5e-09 64.3 123 50.4
Aa31LG2G5470 Aethionema arabicum HOM05D003199 ORTHO05D003528 1.1e-08 63.9 94 42.6
FAN05G2482 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.1e-08 63.9 119 47.9
Sed0014935 Sechium edule HOM05D003199 ORTHO05D003528 1.1e-08 63.9 93 37.6
THA.LOC104823979 Tarenaya hassleriana HOM05D003199 ORTHO05D003528 1.1e-08 63.9 66 51.5
HanXRQChr14g0450701 Helianthus annuus HOM05D003199 ORTHO05D003528 1.4e-08 63.5 89 61.8
RcHm_v2.0_Chr2g0175441 Rosa chinensis HOM05D003199 ORTHO05D003528 1.4e-08 63.5 126 47.6
FAN02G1758 Fragaria x ananassa HOM05D003199 ORTHO05D003528 1.9e-08 63.2 128 47.7
MD17G1012600 Malus domestica HOM05D003199 ORTHO05D003528 1.9e-08 63.2 114 33.3
Phvul.001G094500 Phaseolus vulgaris HOM05D003199 ORTHO05D003528 1.9e-08 63.2 89 48.3
EL10Ac6g15370 Beta vulgaris HOM05D003199 ORTHO05D003528 2.5e-08 62.8 89 62.9
Nitab4.5_0002911g0010 Nicotiana tabacum HOM05D003199 ORTHO05D003528 2.5e-08 62.8 138 36.2
FAN14G1306 Fragaria x ananassa HOM05D003199 ORTHO05D003528 3.2e-08 62.4 128 47.7
Prupe.3G305100 Prunus persica HOM05D003199 ORTHO05D003528 3.2e-08 62.4 119 33.6
FvH4_6g53290 Fragaria vesca HOM05D003199 ORTHO05D003528 4.2e-08 62.0 129 47.3
HanXRQChr07g0198271 Helianthus annuus HOM05D003199 ORTHO05D003528 4.2e-08 62.0 119 51.3
Ciclev10016867m.g Citrus clementina HOM05D003199 ORTHO05D003528 5.5e-08 61.6 89 61.8
Eucgr.I01653 Eucalyptus grandis HOM05D003199 ORTHO05D003528 7.2e-08 61.2 89 39.3
AUR62001279 Chenopodium quinoa HOM05D003199 ORTHO05D003528 9.3e-08 60.8 91 39.6
ClCG05G013420 Citrullus lanatus HOM05D003199 ORTHO05D003528 9.3e-08 60.8 90 38.9
Haze_14863 Corylus avellana HOM05D003199 ORTHO05D003528 9.3e-08 60.8 68 47.1
MELO3C014875.2 Cucumis melo HOM05D003199 ORTHO05D003528 9.3e-08 60.8 90 38.9
Nitab4.5_0000040g0380 Nicotiana tabacum HOM05D003199 ORTHO05D003528 9.3e-08 60.8 121 36.4
PGR142G2189 Punica granatum HOM05D003199 ORTHO05D003528 1.2e-07 60.5 93 49.5
AUR62025727 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.6e-07 60.1 136 33.8
A02p35140 Brassica napus HOM05D003199 ORTHO05D003528 2.1e-07 59.7 51 54.9
BraA02t08519Z Brassica rapa HOM05D003199 ORTHO05D003528 2.1e-07 59.7 51 54.9
VMungo1383G1719 Vigna mungo HOM05D003199 ORTHO05D003528 2.1e-07 59.7 89 48.3
BcaB04g19427 Brassica carinata HOM05D003199 ORTHO05D003528 2.7e-07 59.3 49 55.1
BcaC03g17429 Brassica carinata HOM05D003199 ORTHO05D003528 2.7e-07 59.3 49 55.1
C02p53770 Brassica napus HOM05D003199 ORTHO05D003528 2.7e-07 59.3 49 55.1
BolC2t11446H Brassica oleracea HOM05D003199 ORTHO05D003528 2.7e-07 59.3 49 55.1
AUR62003498 Chenopodium quinoa HOM05D003199 ORTHO05D003528 2.7e-07 59.3 41 68.3
Manes.15G159800 Manihot esculenta HOM05D003199 ORTHO05D003528 2.7e-07 59.3 89 58.4
Oeu011754.1 Olea europaea HOM05D003199 ORTHO05D003528 2.7e-07 59.3 89 36.0
Atru.chr6.2549 Acer truncatum HOM05D003199 ORTHO05D003528 3.6e-07 58.9 40 70.0
Atru.chr6.2557 Acer truncatum HOM05D003199 ORTHO05D003528 3.6e-07 58.9 40 70.0
Potri.001G331600 Populus trichocarpa HOM05D003199 ORTHO05D003528 3.6e-07 58.9 89 42.7
A09p03290 Brassica napus HOM05D003199 ORTHO05D003528 4.6e-07 58.5 48 56.2
BraA09t35967Z Brassica rapa HOM05D003199 ORTHO05D003528 4.6e-07 58.5 48 56.2
CSS0036982 Camellia sinensis var. sinensis HOM05D003199 ORTHO05D003528 4.6e-07 58.5 119 52.1
Eucgr.J02332 Eucalyptus grandis HOM05D003199 ORTHO05D003528 4.6e-07 58.5 73 50.7
Aqoxy5G03579 Aquilegia oxysepala HOM05D003199 ORTHO05D003528 6.1e-07 58.2 89 38.2
Sc07g0004150 Simmondsia chinensis HOM05D003199 ORTHO05D003528 6.1e-07 58.2 65 47.7
AL5G16270 Arabidopsis lyrata HOM05D003199 ORTHO05D003528 7.9e-07 57.8 43 60.5
BcaB07g30185 Brassica carinata HOM05D003199 ORTHO05D003528 7.9e-07 57.8 84 40.5
Carub.0005s0539 Capsella rubella HOM05D003199 ORTHO05D003528 7.9e-07 57.8 43 60.5
CAN.G473.92 Capsicum annuum HOM05D003199 ORTHO05D003528 7.9e-07 57.8 85 42.4
CARHR148360 Cardamine hirsuta HOM05D003199 ORTHO05D003528 7.9e-07 57.8 43 60.5
AUR62017813 Chenopodium quinoa HOM05D003199 ORTHO05D003528 1.0e-06 57.4 37 73.0
CsaV3_3G027140 Cucumis sativus L. HOM05D003199 ORTHO05D003528 1.0e-06 57.4 142 33.8
Nn1g07337 Nelumbo nucifera HOM05D003199 ORTHO05D003528 1.0e-06 57.4 80 40.0
arahy.Tifrunner.gnm1.ann1.S1U1UA Arachis hypogaea HOM05D003199 ORTHO05D003528 1.3e-06 57.0 60 48.3
CiPaw.04G036100 Carya illinoinensis HOM05D003199 ORTHO05D003528 1.3e-06 57.0 61 50.8
Gohir.A09G035300 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.3e-06 57.0 81 43.2
Gohir.D09G036100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 1.3e-06 57.0 81 43.2
Gorai.006G041200 Gossypium raimondii HOM05D003199 ORTHO05D003528 1.3e-06 57.0 81 43.2
MBI11_g19368_MAGBIO Magnolia biondii HOM05D003199 ORTHO05D003528 1.3e-06 57.0 55 50.9
RcHm_v2.0_Chr2g0088911 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-06 57.0 76 43.4
RcHm_v2.0_Chr2g0088961 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-06 57.0 76 43.4
RcHm_v2.0_Chr2g0089001 Rosa chinensis HOM05D003199 ORTHO05D003528 1.3e-06 57.0 76 43.4
Cfa007237 Carpinus fangiana HOM05D003199 ORTHO05D003528 1.8e-06 56.6 63 47.6
Ca_14371_v3 Cicer arietinum L. HOM05D003199 ORTHO05D003528 1.8e-06 56.6 141 31.2
Duzib147G1480 Durio zibethinus HOM05D003199 ORTHO05D003528 1.8e-06 56.6 42 57.1
Thhalv10004988m.g Eutrema salsugineum HOM05D003199 ORTHO05D003528 1.8e-06 56.6 76 42.1
Oeu011964.1 Olea europaea HOM05D003199 ORTHO05D003528 1.8e-06 56.6 78 47.4
Sabra16G0212600 Salix brachista HOM05D003199 ORTHO05D003528 1.8e-06 56.6 41 63.4
TAR622G0507 Trochodendron aralioides HOM05D003199 ORTHO05D003528 1.8e-06 56.6 70 50.0
AT3G27160 Arabidopsis thaliana HOM05D003199 ORTHO05D003528 2.3e-06 56.2 86 41.9
MSTRG.4586 Avicennia marina HOM05D003199 ORTHO05D003528 2.3e-06 56.2 98 35.7
BcaC04g23918 Brassica carinata HOM05D003199 ORTHO05D003528 2.3e-06 56.2 84 40.5
C09p03490 Brassica napus HOM05D003199 ORTHO05D003528 2.3e-06 56.2 84 40.5
BolC9t53270H Brassica oleracea HOM05D003199 ORTHO05D003528 2.3e-06 56.2 84 40.5
Sp2g16270 Schrenkiella parvula HOM05D003199 ORTHO05D003528 2.3e-06 56.2 76 42.1
Ah.02g120420 Amaranthus hybridus HOM05D003199 ORTHO05D003528 3.9e-06 55.5 92 62.0
Migut.F00072 Erythranthe guttata HOM05D003199 ORTHO05D003528 3.9e-06 55.5 41 58.5
Gohir.D04G077600 Gossypium hirsutum HOM05D003199 ORTHO05D003528 3.9e-06 55.5 89 56.2
Lju41C52T19 Lonicera japonica HOM05D003199 ORTHO05D003528 3.9e-06 55.5 71 40.8
Medtr7g029325 Medicago truncatula HOM05D003199 ORTHO05D003528 3.9e-06 55.5 61 44.3
EL10Ac7g18075 Beta vulgaris HOM05D003199 ORTHO05D003528 5.1e-06 55.1 91 36.3
Gohir.A05G339100 Gossypium hirsutum HOM05D003199 ORTHO05D003528 5.1e-06 55.1 89 56.2
Hund05646 Selenicereus undatus HOM05D003199 ORTHO05D003528 5.1e-06 55.1 104 46.2
CAN.G1491.4 Capsicum annuum HOM05D003199 ORTHO05D003528 6.7e-06 54.7 74 43.2
CiPaw.03G054500 Carya illinoinensis HOM05D003199 ORTHO05D003528 6.7e-06 54.7 60 48.3
CsaV3_1G009300 Cucumis sativus L. HOM05D003199 ORTHO05D003528 6.7e-06 54.7 91 36.3
Gorai.012G087400 Gossypium raimondii HOM05D003199 ORTHO05D003528 6.7e-06 54.7 89 56.2
Nitab4.5_0010637g0020 Nicotiana tabacum HOM05D003199 ORTHO05D003528 6.7e-06 54.7 41 63.4
QL02p071628 Quercus lobata HOM05D003199 ORTHO05D003528 6.7e-06 54.7 58 50.0
SalBow4G2736 Salvia bowleyana HOM05D003199 ORTHO05D003528 6.7e-06 54.7 36 69.4
Sed0000109 Sechium edule HOM05D003199 ORTHO05D003528 6.7e-06 54.7 157 31.2
Glyma.05G077200 Glycine max HOM05D003199 ORTHO05D003528 8.7e-06 54.3 89 32.6
Lj2g0014633 Lotus japonicus HOM05D003199 ORTHO05D003528 8.7e-06 54.3 90 36.7


User provided reference genes

Program Settings