Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 2.0e-65 252.3 126 100.0
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 3.9e-45 184.9 101 91.1
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.9e-39 166.0 112 71.4
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 2.1e-35 152.5 103 69.9
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 4.7e-35 151.4 103 70.9
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 4.7e-35 151.4 101 71.3
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 6.2e-35 151.0 103 70.9
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 6.2e-35 151.0 100 70.0
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 6.2e-35 151.0 101 73.3
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 1.1e-34 150.2 103 68.9
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 1.1e-34 150.2 103 68.9
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 1.4e-34 149.8 103 70.9
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 2.3e-34 149.1 103 68.9
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 2.3e-34 149.1 103 68.9
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 2.3e-34 149.1 103 68.0
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 2.3e-34 149.1 103 68.9
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 2.3e-34 149.1 103 69.9
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 2.3e-34 149.1 103 68.0
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 3.1e-34 148.7 103 68.9
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 4.0e-34 148.3 103 67.0
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 4.0e-34 148.3 115 63.5
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 6.8e-34 147.5 114 64.0
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 8.9e-34 147.1 111 64.0
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 1.2e-33 146.7 101 69.3
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.2e-33 146.7 112 63.4
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.2e-33 146.7 103 68.9
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.5e-33 146.4 115 63.5
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 1.5e-33 146.4 115 62.6
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 2.0e-33 146.0 116 60.3
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 2.6e-33 145.6 103 67.0
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 2.6e-33 145.6 101 69.3
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 2.6e-33 145.6 101 70.3
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.6e-33 145.6 117 60.7
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 2.6e-33 145.6 97 72.2
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 2.6e-33 145.6 101 71.3
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 4.4e-33 144.8 99 68.7
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 4.4e-33 144.8 115 61.7
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 4.4e-33 144.8 103 68.0
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 5.8e-33 144.4 97 70.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 5.8e-33 144.4 115 61.7
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 7.6e-33 144.1 103 68.0
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 7.6e-33 144.1 103 65.0
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 7.6e-33 144.1 101 69.3
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 7.6e-33 144.1 101 69.3
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 7.6e-33 144.1 101 70.3
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 7.6e-33 144.1 97 70.1
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 7.6e-33 144.1 99 68.7
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 7.6e-33 144.1 101 68.3
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 7.6e-33 144.1 97 70.1
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 9.9e-33 143.7 99 70.7
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 9.9e-33 143.7 97 69.1
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 9.9e-33 143.7 115 60.9
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 9.9e-33 143.7 103 66.0
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 9.9e-33 143.7 92 72.8
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 1.3e-32 143.3 102 68.6
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 1.7e-32 142.9 99 67.7
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 1.7e-32 142.9 101 66.3
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 1.7e-32 142.9 101 66.3
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 1.7e-32 142.9 101 68.3
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 2.9e-32 142.1 101 68.3
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 2.9e-32 142.1 101 69.3
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.7e-32 141.7 115 60.9
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 3.7e-32 141.7 103 67.0
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 3.7e-32 141.7 101 67.3
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 3.7e-32 141.7 101 69.3
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 3.7e-32 141.7 103 68.0
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 3.7e-32 141.7 101 69.3
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 3.7e-32 141.7 97 68.0
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 3.7e-32 141.7 97 68.0
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 4.9e-32 141.4 97 69.1
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 4.9e-32 141.4 101 66.3
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 6.4e-32 141.0 101 67.3
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 8.4e-32 140.6 101 67.3
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 8.4e-32 140.6 101 67.3
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.1e-31 140.2 101 66.3
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 1.1e-31 140.2 101 66.3
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 5.4e-31 137.9 101 67.3
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 5.4e-31 137.9 115 60.9
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 5.4e-31 137.9 103 64.1
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 7.1e-31 137.5 101 65.3
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 7.1e-31 137.5 101 65.3
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 7.1e-31 137.5 101 66.3
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 7.1e-31 137.5 101 66.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 9.2e-31 137.1 101 67.3
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 9.2e-31 137.1 101 67.3
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 9.2e-31 137.1 101 65.3
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.2e-30 136.7 97 63.9
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 1.6e-30 136.3 118 56.8
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 2.1e-30 136.0 97 63.9
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.7e-30 135.6 98 68.4
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 3.5e-30 135.2 124 55.6
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 3.5e-30 135.2 101 66.3
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 3.5e-30 135.2 101 66.3
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 3.5e-30 135.2 101 66.3
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 1.3e-29 133.3 101 64.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 1.3e-29 133.3 101 65.3
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 3.9e-29 131.7 101 66.3
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 1.5e-28 129.8 101 63.4
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.9e-28 129.4 95 64.2
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.5e-28 129.0 115 57.4
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 2.5e-28 129.0 101 62.4
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 3.3e-28 128.6 101 62.4
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 9.6e-28 127.1 100 61.0
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 9.6e-28 127.1 99 61.6
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 1.1e-26 123.6 101 60.4
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 1.1e-26 123.6 99 63.6
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 1.8e-26 122.9 95 62.1
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 4.0e-26 121.7 86 67.4
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 6.8e-26 120.9 125 53.6
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 2.9e-24 115.5 80 66.2
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 3.2e-23 112.1 119 50.4
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 2.1e-22 109.4 98 53.1
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 3.5e-22 108.6 100 59.0
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 1.0e-21 107.1 87 63.2
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 2.3e-21 105.9 82 63.4
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 3.0e-21 105.5 71 66.2
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 6.6e-21 104.4 164 42.1
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.5e-20 103.2 71 64.8
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 3.3e-20 102.1 85 54.1
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 4.3e-20 101.7 75 65.3
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 4.3e-20 101.7 75 65.3
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 1.6e-19 99.8 95 56.8
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 4.8e-19 98.2 80 58.8
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 3.1e-18 95.5 67 65.7
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.6e-17 92.4 128 39.1
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 6.4e-16 87.8 66 65.2
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 9.3e-15 84.0 51 72.5
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 3.9e-13 78.6 66 57.6
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.5e-12 75.9 44 75.0
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 9.6e-12 73.9 38 84.2
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 6.2e-11 71.2 58 62.1
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 1.4e-10 70.1 44 70.5
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 4.0e-10 68.6 54 63.0
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 4.9e-08 61.6 48 58.3
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 3.5e-06 55.5 50 56.0


User provided reference genes

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