Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 7.6e-142 507.3 281 100.0
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 4.1e-111 405.2 271 84.1
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 3.9e-106 388.7 281 79.0
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 5.1e-106 388.3 282 79.8
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.1e-105 387.1 281 77.9
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 1.9e-105 386.3 281 77.9
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 3.3e-105 385.6 282 80.1
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 5.7e-105 384.8 271 79.0
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 7.4e-105 384.4 282 78.0
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 7.4e-105 384.4 270 80.4
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.3e-104 383.6 281 78.3
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 2.2e-104 382.9 282 79.4
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.8e-104 382.5 282 78.0
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 4.8e-104 381.7 282 78.4
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 6.3e-104 381.3 271 79.7
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 6.3e-104 381.3 282 77.0
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 8.2e-104 380.9 282 78.4
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 8.2e-104 380.9 271 77.1
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.1e-103 380.6 282 78.4
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 1.1e-103 380.6 282 77.3
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 1.4e-103 380.2 282 78.4
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 1.4e-103 380.2 282 78.4
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 1.8e-103 379.8 272 79.0
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 3.1e-103 379.0 281 76.9
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 4.1e-103 378.6 282 77.7
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 4.1e-103 378.6 282 77.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 4.1e-103 378.6 282 76.6
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 6.9e-103 377.9 282 77.7
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 9.1e-103 377.5 282 77.0
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 1.2e-102 377.1 279 76.7
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.2e-102 377.1 282 77.0
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 1.2e-102 377.1 282 77.7
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 1.2e-102 377.1 282 77.7
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.5e-102 376.7 281 77.6
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 2.0e-102 376.3 282 77.3
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 2.0e-102 376.3 282 75.9
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 2.0e-102 376.3 272 78.3
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 2.6e-102 375.9 278 75.9
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 2.6e-102 375.9 278 75.9
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.6e-102 375.9 282 76.6
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 2.6e-102 375.9 282 76.6
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 2.6e-102 375.9 282 76.6
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 2.6e-102 375.9 282 77.7
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 2.6e-102 375.9 271 78.2
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 2.6e-102 375.9 281 76.2
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 4.5e-102 375.2 279 76.3
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 4.5e-102 375.2 271 79.0
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 4.5e-102 375.2 271 78.6
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 5.9e-102 374.8 281 77.6
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 5.9e-102 374.8 282 76.6
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 5.9e-102 374.8 282 77.3
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 5.9e-102 374.8 281 76.2
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 7.7e-102 374.4 282 77.3
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 1.0e-101 374.0 282 76.2
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.0e-101 374.0 282 75.9
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 1.3e-101 373.6 282 75.9
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 1.7e-101 373.2 282 75.9
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 5.0e-101 371.7 282 75.2
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 8.5e-101 370.9 281 75.8
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 8.5e-101 370.9 272 77.2
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 8.5e-101 370.9 281 76.5
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 8.5e-101 370.9 281 76.5
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 1.1e-100 370.5 271 77.9
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 1.1e-100 370.5 271 78.6
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 1.4e-100 370.2 282 75.2
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.4e-100 370.2 281 75.4
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 1.9e-100 369.8 281 76.2
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 3.2e-100 369.0 284 76.8
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 9.4e-100 367.5 286 74.8
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 9.4e-100 367.5 270 78.1
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 9.4e-100 367.5 282 77.3
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 2.1e-99 366.3 271 77.1
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 4.6e-99 365.2 281 75.4
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 7.9e-99 364.4 281 74.4
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 1.5e-97 360.1 266 78.6
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.5e-97 360.1 306 70.3
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.3e-97 359.0 279 73.1
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 5.7e-97 358.2 282 70.2
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 4.8e-96 355.1 281 73.7
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 6.3e-96 354.8 281 73.0
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.4e-95 353.6 327 66.4
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 3.1e-95 352.4 281 70.5
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 4.1e-95 352.1 271 74.2
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 9.1e-95 350.9 267 75.7
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.2e-94 350.5 326 67.2
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 2.0e-94 349.7 265 77.0
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 3.4e-94 349.0 273 74.7
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 3.4e-94 349.0 312 68.3
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 5.9e-94 348.2 265 76.6
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 1.0e-93 347.4 270 72.2
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 1.3e-93 347.1 267 72.7
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 5.0e-93 345.1 275 72.0
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.1e-92 344.0 255 76.1
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 4.7e-91 338.6 323 61.3
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 4.7e-91 338.6 268 71.3
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 7.9e-91 337.8 301 64.8
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.4e-90 337.0 279 66.7
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 3.9e-90 335.5 272 67.6
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 4.4e-89 332.0 357 56.3
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 9.7e-89 330.9 281 69.4
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 3.7e-88 328.9 272 68.8
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 3.7e-88 328.9 265 71.3
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 6.3e-88 328.2 231 79.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 1.8e-87 326.6 267 72.3
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 2.4e-87 326.2 258 73.6
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 5.0e-85 318.5 338 60.9
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 3.2e-84 315.8 265 68.7
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 5.2e-82 308.5 232 77.6
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 6.7e-82 308.1 271 62.0
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 2.0e-81 306.6 276 64.9
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 2.2e-80 303.1 268 65.7
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 1.4e-79 300.4 279 64.2
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.0e-78 296.6 251 69.7
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 2.0e-78 296.6 251 69.7
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 1.9e-76 290.0 227 75.8
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 7.2e-76 288.1 226 75.7
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.8e-74 283.5 267 58.4
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 4.4e-73 278.9 226 74.8
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 5.9e-70 268.5 278 60.4
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.5e-69 265.0 278 60.1
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 1.2e-65 254.2 319 54.2
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 3.0e-58 229.6 188 71.3
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 5.2e-58 228.8 283 51.2
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 8.9e-58 228.0 281 48.4
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 1.2e-57 227.6 260 53.1
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 1.2e-49 201.1 175 70.9
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 2.4e-47 193.4 182 65.9
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 2.0e-46 190.3 147 76.2
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.6e-46 189.1 300 46.0
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.3e-45 187.6 138 72.5
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 3.1e-42 176.4 134 70.9
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 8.9e-42 174.9 132 69.7
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 5.6e-36 155.6 106 74.5
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 8.1e-35 151.8 97 81.4
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 1.7e-32 144.1 90 82.2
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.8e-27 126.7 84 78.6
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 6.2e-27 125.6 74 86.5
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 6.2e-27 125.6 74 86.5
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 3.1e-26 123.2 80 77.5
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 6.9e-26 122.1 154 50.0
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.3e-24 117.9 80 72.5
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 1.5e-20 104.4 157 45.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 6.2e-19 99.0 259 35.1
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 6.9e-18 95.5 104 53.8
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.3e-16 91.3 71 83.1
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 2.2e-16 90.5 178 37.1
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 2.9e-16 90.1 57 75.4
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 4.9e-16 89.4 158 43.0
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 1.4e-15 87.8 153 41.2
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 4.2e-15 86.3 71 76.1
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 5.4e-15 85.9 157 40.1
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-14 84.3 62 74.2
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 7.9e-14 82.0 156 35.3
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 6.7e-13 79.0 46 84.8
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.5e-12 77.8 180 33.9
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.5e-12 77.8 336 28.0
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 1.9e-12 77.4 46 82.6
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 3.3e-12 76.6 46 78.3
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-11 74.3 157 38.9
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 5.3e-10 69.3 43 76.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.6e-09 67.0 264 32.2
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 4.6e-06 56.2 140 42.9


User provided reference genes

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