Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb205890 Zea mays HOM05D004608 ORTHO05D006533 3.2e-201 704.9 362 100.0
Os02g0198600 Oryza sativa ssp. japonica HOM05D004608 ORTHO05D006533 5.9e-171 604.4 359 86.1
Nn1g07694 Nelumbo nucifera HOM05D004608 ORTHO05D006533 1.4e-148 530.0 343 77.8
Cfa016939 Carpinus fangiana HOM05D004608 ORTHO05D006533 1.8e-148 529.6 338 79.6
QL08p001615 Quercus lobata HOM05D004608 ORTHO05D006533 4.1e-148 528.5 345 78.0
CiPaw.12G141700 Carya illinoinensis HOM05D004608 ORTHO05D006533 1.6e-147 526.6 345 78.0
Haze_09894 Corylus avellana HOM05D004608 ORTHO05D006533 5.9e-147 524.6 338 78.7
Dinv40894 Davidia involucrata HOM05D004608 ORTHO05D006533 7.7e-147 524.2 336 79.8
SGA_v2.0_scaffold168G38588 Striga asiatica HOM05D004608 ORTHO05D006533 2.2e-146 522.7 352 77.0
GSVIVG01014786001 Vitis vinifera HOM05D004608 ORTHO05D006533 2.2e-146 522.7 353 75.9
Migut.M01599 Erythranthe guttata HOM05D004608 ORTHO05D006533 8.5e-146 520.8 366 74.0
Ciclev10008478m.g Citrus clementina HOM05D004608 ORTHO05D006533 1.1e-145 520.4 351 74.6
HanXRQChr11g0334621 Helianthus annuus HOM05D004608 ORTHO05D006533 1.1e-145 520.4 343 78.1
Lj1C897G12 Lonicera japonica HOM05D004608 ORTHO05D006533 1.1e-145 520.4 353 75.1
Manes.05G206400 Manihot esculenta HOM05D004608 ORTHO05D006533 1.5e-145 520.0 336 78.6
ClCG09G021670 Citrullus lanatus HOM05D004608 ORTHO05D006533 2.5e-145 519.2 350 76.0
MBI14_g00953_MAGBIO Magnolia biondii HOM05D004608 ORTHO05D006533 3.2e-145 518.8 352 75.3
Cc05_g15480 Coffea canephora HOM05D004608 ORTHO05D006533 4.2e-145 518.5 355 76.6
Eucgr.F03661 Eucalyptus grandis HOM05D004608 ORTHO05D006533 1.2e-144 516.9 355 75.5
Duzib213G0525 Durio zibethinus HOM05D004608 ORTHO05D006533 1.6e-144 516.5 345 76.5
Glyma.18G072500 Glycine max HOM05D004608 ORTHO05D006533 2.1e-144 516.2 356 75.6
MD03G1039600 Malus domestica HOM05D004608 ORTHO05D006533 2.1e-144 516.2 365 74.5
MD11G1040100 Malus domestica HOM05D004608 ORTHO05D006533 2.1e-144 516.2 350 75.7
CAN.G492.45 Capsicum annuum HOM05D004608 ORTHO05D006533 3.6e-144 515.4 353 75.1
Prupe.6G031700 Prunus persica HOM05D004608 ORTHO05D006533 4.7e-144 515.0 358 74.9
DCAR_017596 Daucus carota HOM05D004608 ORTHO05D006533 1.0e-143 513.8 343 77.0
HanXRQChr05g0160221 Helianthus annuus HOM05D004608 ORTHO05D006533 1.4e-143 513.5 346 75.7
CsaV3_7G021370 Cucumis sativus L. HOM05D004608 ORTHO05D006533 2.3e-143 512.7 353 75.9
Solyc10g005890.3 Solanum lycopersicum HOM05D004608 ORTHO05D006533 2.3e-143 512.7 357 74.8
Sopen10g001840 Solanum pennellii HOM05D004608 ORTHO05D006533 2.3e-143 512.7 357 74.8
HPP92_021912 Vanilla planifolia HOM05D004608 ORTHO05D006533 2.3e-143 512.7 336 77.4
Aqoxy4G02317 Aquilegia oxysepala HOM05D004608 ORTHO05D006533 3.0e-143 512.3 348 76.4
Ca_14850_v3 Cicer arietinum L. HOM05D004608 ORTHO05D006533 4.0e-143 511.9 343 77.3
Sed0022757 Sechium edule HOM05D004608 ORTHO05D006533 4.0e-143 511.9 338 77.2
Atru.chr2.3848 Acer truncatum HOM05D004608 ORTHO05D006533 5.2e-143 511.5 359 73.8
Rhsim06G0233900 Rhododendron simsii HOM05D004608 ORTHO05D006533 5.2e-143 511.5 343 77.0
Glyma.08G337500 Glycine max HOM05D004608 ORTHO05D006533 8.8e-143 510.8 356 75.3
Sed0006020 Sechium edule HOM05D004608 ORTHO05D006533 8.8e-143 510.8 356 73.9
Actinidia30368 Actinidia chinensis HOM05D004608 ORTHO05D006533 2.0e-142 509.6 349 75.6
Lsat_1_v5_gn_7_116460 Lactuca sativa HOM05D004608 ORTHO05D006533 2.0e-142 509.6 354 74.0
Phvul.006G060300 Phaseolus vulgaris HOM05D004608 ORTHO05D006533 2.0e-142 509.6 353 75.6
PGR031G2516 Punica granatum HOM05D004608 ORTHO05D006533 2.0e-142 509.6 364 73.4
CSS0013715 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 2.6e-142 509.2 340 78.2
PGSC0003DMG400014406 Solanum tuberosum HOM05D004608 ORTHO05D006533 2.6e-142 509.2 348 76.1
CSS0047803 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 3.4e-142 508.8 351 75.8
Potri.001G469300 Populus trichocarpa HOM05D004608 ORTHO05D006533 3.4e-142 508.8 337 77.2
vmacro11628 Vaccinium macrocarpon HOM05D004608 ORTHO05D006533 3.4e-142 508.8 368 72.0
PSO541G2325 Papaver somniferum HOM05D004608 ORTHO05D006533 4.4e-142 508.4 353 73.4
Gohir.D13G133200 Gossypium hirsutum HOM05D004608 ORTHO05D006533 5.7e-142 508.1 349 74.8
CANSAT11G0422 Cannabis sativa HOM05D004608 ORTHO05D006533 9.8e-142 507.3 356 72.8
Gohir.A13G130142 Gossypium hirsutum HOM05D004608 ORTHO05D006533 9.8e-142 507.3 348 74.7
Potri.011G166100 Populus trichocarpa HOM05D004608 ORTHO05D006533 9.8e-142 507.3 361 73.4
THA.LOC104801910 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 9.8e-142 507.3 358 73.5
THA.LOC104810298 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 9.8e-142 507.3 358 73.5
Sp3g11470 Schrenkiella parvula HOM05D004608 ORTHO05D006533 1.3e-141 506.9 348 74.1
Thhalv10020839m.g Eutrema salsugineum HOM05D004608 ORTHO05D006533 2.2e-141 506.1 347 73.8
THA.LOC104815684 Tarenaya hassleriana HOM05D004608 ORTHO05D006533 2.2e-141 506.1 347 74.9
VMungo0540G0162 Vigna mungo HOM05D004608 ORTHO05D006533 2.2e-141 506.1 356 74.7
TWI38G1265 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 2.8e-141 505.8 345 75.4
Thecc.07G005400 Theobroma cacao HOM05D004608 ORTHO05D006533 3.7e-141 505.4 334 76.9
ECA236G2785 Erigeron canadensis HOM05D004608 ORTHO05D006533 6.3e-141 504.6 363 72.5
Oeu026626.2 Olea europaea HOM05D004608 ORTHO05D006533 6.3e-141 504.6 345 74.5
MSTRG.7029 Avicennia marina HOM05D004608 ORTHO05D006533 8.3e-141 504.2 349 75.4
Gohir.A04G003100 Gossypium hirsutum HOM05D004608 ORTHO05D006533 8.3e-141 504.2 334 76.9
Sabra16G0318300 Salix brachista HOM05D004608 ORTHO05D006533 8.3e-141 504.2 342 75.4
CARHR087890 Cardamine hirsuta HOM05D004608 ORTHO05D006533 1.1e-140 503.8 369 70.5
Lj6g0013957 Lotus japonicus HOM05D004608 ORTHO05D006533 1.8e-140 503.1 341 76.8
Hund22995 Selenicereus undatus HOM05D004608 ORTHO05D006533 2.4e-140 502.7 359 71.9
AL3G25090 Arabidopsis lyrata HOM05D004608 ORTHO05D006533 4.1e-140 501.9 358 72.1
Gohir.D05G386600 Gossypium hirsutum HOM05D004608 ORTHO05D006533 4.1e-140 501.9 336 76.5
Gorai.009G453300 Gossypium raimondii HOM05D004608 ORTHO05D006533 4.1e-140 501.9 336 76.5
TWI38G2408 Tripterygium wilfordii HOM05D004608 ORTHO05D006533 7.0e-140 501.1 345 74.8
Gorai.013G149500 Gossypium raimondii HOM05D004608 ORTHO05D006533 9.1e-140 500.7 357 73.1
Cpa.g.sc12.91 Carica papaya HOM05D004608 ORTHO05D006533 1.6e-139 500.0 358 73.2
TPR.G17932 Trifolium pratense HOM05D004608 ORTHO05D006533 1.6e-139 500.0 339 75.5
COL.COLO4_07760 Corchorus olitorius HOM05D004608 ORTHO05D006533 2.7e-139 499.2 349 73.1
AT3G13235 Arabidopsis thaliana HOM05D004608 ORTHO05D006533 3.5e-139 498.8 352 72.4
Lalb_Chr15g0082461 Lupinus albus HOM05D004608 ORTHO05D006533 3.5e-139 498.8 357 73.7
MELO3C013214.2 Cucumis melo HOM05D004608 ORTHO05D006533 1.0e-138 497.3 353 74.8
Psat5g164640 Pisum sativum HOM05D004608 ORTHO05D006533 1.0e-138 497.3 347 73.5
RcHm_v2.0_Chr5g0075221 Rosa chinensis HOM05D004608 ORTHO05D006533 8.5e-138 494.2 349 73.4
arahy.Tifrunner.gnm1.ann1.R4UTE8 Arachis hypogaea HOM05D004608 ORTHO05D006533 1.1e-137 493.8 342 74.3
arahy.Tifrunner.gnm1.ann1.EI2AUC Arachis hypogaea HOM05D004608 ORTHO05D006533 1.5e-137 493.4 343 74.1
EL10Ac4g07509 Beta vulgaris HOM05D004608 ORTHO05D006533 1.5e-137 493.4 351 72.4
BraA03t12964Z Brassica rapa HOM05D004608 ORTHO05D006533 3.2e-137 492.3 351 71.8
A03p38110 Brassica napus HOM05D004608 ORTHO05D006533 4.2e-137 491.9 351 71.8
C03p46240 Brassica napus HOM05D004608 ORTHO05D006533 2.1e-136 489.6 348 71.8
FvH4_3g42010 Fragaria vesca HOM05D004608 ORTHO05D006533 1.0e-135 487.3 345 73.0
C01p51800 Brassica napus HOM05D004608 ORTHO05D006533 1.4e-135 486.9 350 71.4
BolC3t16895H Brassica oleracea HOM05D004608 ORTHO05D006533 1.8e-135 486.5 359 70.2
AUR62035639 Chenopodium quinoa HOM05D004608 ORTHO05D006533 3.0e-135 485.7 350 71.1
Carub.0003s1265 Capsella rubella HOM05D004608 ORTHO05D006533 8.8e-135 484.2 352 70.7
AUR62017165 Chenopodium quinoa HOM05D004608 ORTHO05D006533 8.8e-135 484.2 350 70.6
TAR626G0684 Trochodendron aralioides HOM05D004608 ORTHO05D006533 8.8e-135 484.2 314 77.4
FAN16G3187 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.0e-134 483.0 356 71.1
FAN25G0703 Fragaria x ananassa HOM05D004608 ORTHO05D006533 9.8e-134 480.7 356 70.8
Aa31LG8G500 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.9e-133 478.4 374 66.8
A01p40280 Brassica napus HOM05D004608 ORTHO05D006533 1.6e-131 473.4 351 69.8
BraA01t04064Z Brassica rapa HOM05D004608 ORTHO05D006533 1.6e-131 473.4 351 69.8
FAN21G2140 Fragaria x ananassa HOM05D004608 ORTHO05D006533 1.6e-131 473.4 376 67.3
ATR0587G001 Amborella trichopoda HOM05D004608 ORTHO05D006533 2.0e-131 473.0 338 73.4
FAN11G3108 Fragaria x ananassa HOM05D004608 ORTHO05D006533 2.7e-131 472.6 376 67.0
Sabra11G0139800 Salix brachista HOM05D004608 ORTHO05D006533 4.5e-131 471.9 374 67.9
Nitab4.5_0007214g0010 Nicotiana tabacum HOM05D004608 ORTHO05D006533 1.9e-129 466.5 353 69.7
Peaxi162Scf00219g00158 Petunia axillaris HOM05D004608 ORTHO05D006533 3.6e-128 462.2 364 68.7
Hma1.2p1_0193F.1_g084100 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.5e-123 445.7 336 70.2
Hma1.2p1_2995F.1_g331425 Hydrangea macrophylla HOM05D004608 ORTHO05D006533 3.5e-123 445.7 336 70.2
Pp3c4_20890 Physcomitrium patens HOM05D004608 ORTHO05D006533 5.9e-123 444.9 340 65.6
AagrBONN_evm.TU.Sc2ySwM_117.3155 Anthoceros agrestis HOM05D004608 ORTHO05D006533 9.5e-121 437.6 375 59.7
TAR624G0837 Trochodendron aralioides HOM05D004608 ORTHO05D006533 6.2e-120 434.9 346 66.5
BolC1t05127H Brassica oleracea HOM05D004608 ORTHO05D006533 2.3e-114 416.4 321 68.5
Mapoly0030s0110 Marchantia polymorpha HOM05D004608 ORTHO05D006533 3.9e-114 415.6 330 62.7
Duzib268G0270 Durio zibethinus HOM05D004608 ORTHO05D006533 9.2e-108 394.4 348 61.5
Sc03g0011700 Simmondsia chinensis HOM05D004608 ORTHO05D006533 3.9e-106 389.0 271 74.9
Nitab4.5_0001622g0040 Nicotiana tabacum HOM05D004608 ORTHO05D006533 6.2e-104 381.7 295 68.5
Oeu019694.2 Olea europaea HOM05D004608 ORTHO05D006533 4.4e-102 375.6 283 71.0
Actinidia10581 Actinidia chinensis HOM05D004608 ORTHO05D006533 3.3e-97 359.4 348 60.3
unitig_899.g15266 Utricularia gibba HOM05D004608 ORTHO05D006533 6.2e-96 355.1 324 62.3
Oeu019695.1 Olea europaea HOM05D004608 ORTHO05D006533 9.0e-95 351.3 329 59.3
CBR_g36902 Chara braunii HOM05D004608 ORTHO05D006533 6.2e-80 302.0 247 61.1
MCO11G772 Micromonas commoda HOM05D004608 ORTHO05D006533 8.1e-80 301.6 333 49.2
Ah.06g180960 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.2e-76 289.3 286 56.6
PRCOL_00000426 Prasinoderma coloniale HOM05D004608 ORTHO05D006533 3.5e-75 286.2 372 43.8
CDE05G0237 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 2.1e-72 276.9 259 59.1
Cre10.g447300 Chlamydomonas reinhardtii HOM05D004608 ORTHO05D006533 8.2e-72 275.0 344 45.6
Pp3c17_4800 Physcomitrium patens HOM05D004608 ORTHO05D006533 5.3e-63 245.7 395 39.5
Aa31LG10G450 Aethionema arabicum HOM05D004608 ORTHO05D006533 4.1e-55 219.5 325 41.5
CDE05G1663 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 7.7e-54 215.3 125 81.6
QL09p009005 Quercus lobata HOM05D000176 ORTHO05D000106 3.6e-51 206.5 125 80.8
Cfa022177 Carpinus fangiana HOM05D004608 ORTHO05D006533 4.4e-49 199.5 317 38.8
unitig_699.g19599 Utricularia gibba HOM05D004608 ORTHO05D006533 5.0e-45 186.0 320 36.6
Aa31LG10G470 Aethionema arabicum HOM05D004608 ORTHO05D006533 1.5e-41 174.5 314 35.7
CSS0026438 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 4.8e-40 169.5 92 82.6
CSS0036658 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 1.4e-39 167.9 92 81.5
Ah.06g180950 Amaranthus hybridus HOM05D004608 ORTHO05D006533 4.7e-35 152.9 131 60.3
AL5G25300 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 8.0e-35 152.1 105 71.4
QL05p082689 Quercus lobata HOM05D004608 ORTHO05D006533 7.7e-30 135.6 94 71.3
AUR62020809 Chenopodium quinoa HOM05D004608 ORTHO05D006533 5.0e-29 132.9 120 60.8
AL3G34310 Arabidopsis lyrata HOM05D004608 ORTHO05D038587 1.7e-24 117.9 129 51.9
MD12G1084200 Malus domestica HOM05D004608 ORTHO05D249232 8.3e-24 115.5 65 87.7
CSS0047513 Camellia sinensis var. sinensis HOM05D004608 ORTHO05D006533 6.5e-21 105.9 58 79.3
CDE05G3009 Ceratophyllum demersum HOM05D004608 ORTHO05D006533 4.2e-20 103.2 77 68.8
VMungo0954G0002 Vigna mungo HOM05D004608 ORTHO05D432787 2.8e-16 90.5 74 63.5
AUR62025404 Chenopodium quinoa HOM05D000200 ORTHO05D000262 1.1e-15 88.6 106 50.9
A05p36340 Brassica napus HOM05D004608 ORTHO05D006533 4.5e-14 83.2 65 66.2
CBR_g31527 Chara braunii HOM05D004608 ORTHO05D006533 3.8e-13 80.1 96 42.7
Sopen12g018380 Solanum pennellii HOM05D000691 ORTHO05D000378 3.7e-08 63.5 120 30.8
Glyma.10G116100 Glycine max HOM05D004608 ORTHO05D021061 4.9e-08 63.2 31 87.1
Sopen04g010080 Solanum pennellii HOM05D000004 ORTHO05D000002 4.9e-08 63.2 120 30.8
Sopen07g021860 Solanum pennellii HOM05D000004 ORTHO05D000002 4.9e-08 63.2 120 30.8
Sopen04g014250 Solanum pennellii HOM05D000004 ORTHO05D000378 6.4e-08 62.8 130 30.8
Sopen07g015160 Solanum pennellii HOM05D000691 ORTHO05D000378 6.4e-08 62.8 120 30.8
Sopen09g023520 Solanum pennellii HOM05D000004 ORTHO05D000002 1.1e-07 62.0 120 30.8
Sopen07g004930 Solanum pennellii HOM05D000004 ORTHO05D000002 1.4e-07 61.6 169 29.6
Sopen10g020660 Solanum pennellii HOM05D000004 ORTHO05D000002 5.4e-07 59.7 169 31.4
Sopen05g011340 Solanum pennellii HOM05D000004 ORTHO05D000002 2.0e-06 57.8 166 25.3
QL09p040375 Quercus lobata HOM05D000176 ORTHO05D000106 6.0e-06 56.2 41 65.9
Sopen10g011040 Solanum pennellii HOM05D000691 ORTHO05D000378 6.0e-06 56.2 129 28.7
CBR_g37104 Chara braunii HOM05D000505 ORTHO05D001303 7.8e-06 55.8 187 26.2
Sopen01g026700 Solanum pennellii HOM05D000004 ORTHO05D000002 7.8e-06 55.8 120 28.3


User provided reference genes

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