Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 2.3e-54 215.7 140 100.0
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 4.9e-25 118.2 152 52.0
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 1.5e-13 80.1 65 60.0
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 2.6e-10 69.3 79 49.4
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 2.6e-10 69.3 79 49.4
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 3.4e-10 68.9 68 54.4
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 1.7e-09 66.6 66 54.5
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.9e-09 65.9 59 55.9
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 2.9e-09 65.9 59 54.2
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 3.8e-09 65.5 39 69.2
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 6.5e-09 64.7 55 58.2
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 1.1e-08 63.9 37 73.0
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 1.1e-08 63.9 55 58.2
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 1.1e-08 63.9 39 69.2
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 1.4e-08 63.5 42 64.3
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 1.4e-08 63.5 41 68.3
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 1.4e-08 63.5 61 50.8
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 1.9e-08 63.2 66 51.5
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 1.9e-08 63.2 67 49.3
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 2.5e-08 62.8 50 58.0
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 2.5e-08 62.8 35 71.4
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 2.5e-08 62.8 58 55.2
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 2.5e-08 62.8 39 69.2
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 3.2e-08 62.4 59 52.5
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 4.2e-08 62.0 37 70.3
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 4.2e-08 62.0 42 64.3
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 4.2e-08 62.0 59 50.8
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 4.2e-08 62.0 59 50.8
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 5.5e-08 61.6 34 76.5
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 5.5e-08 61.6 58 55.2
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 5.5e-08 61.6 55 54.5
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 5.5e-08 61.6 67 44.8
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 7.2e-08 61.2 59 55.9
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 7.2e-08 61.2 43 69.8
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 9.3e-08 60.8 86 44.2
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 9.3e-08 60.8 34 76.5
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 9.3e-08 60.8 41 65.9
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 9.3e-08 60.8 71 49.3
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 1.2e-07 60.5 42 61.9
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 1.2e-07 60.5 59 52.5
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 1.2e-07 60.5 46 56.5
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.6e-07 60.1 58 55.2
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 2.1e-07 59.7 85 43.5
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 2.1e-07 59.7 85 43.5
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 2.1e-07 59.7 85 43.5
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 2.1e-07 59.7 59 47.5
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 2.1e-07 59.7 37 70.3
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 2.1e-07 59.7 71 47.9
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 2.1e-07 59.7 35 68.6
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 2.7e-07 59.3 47 59.6
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 2.7e-07 59.3 41 65.9
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 2.7e-07 59.3 46 60.9
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 2.7e-07 59.3 46 60.9
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 3.6e-07 58.9 85 43.5
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 3.6e-07 58.9 85 43.5
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 3.6e-07 58.9 65 47.7
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 3.6e-07 58.9 34 73.5
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 3.6e-07 58.9 70 47.1
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 3.6e-07 58.9 52 55.8
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 3.6e-07 58.9 79 44.3
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 4.6e-07 58.5 43 62.8
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 6.1e-07 58.2 85 42.4
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 6.1e-07 58.2 72 48.6
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 7.9e-07 57.8 85 42.4
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 1.0e-06 57.4 34 70.6
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 1.0e-06 57.4 34 70.6
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 1.0e-06 57.4 62 56.5
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 1.8e-06 56.6 34 70.6
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 2.3e-06 56.2 34 67.6
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 2.3e-06 56.2 34 70.6
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 3.9e-06 55.5 37 67.6
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 3.9e-06 55.5 37 67.6
Haze_17431 Corylus avellana HOM05D002803 ORTHO05D003089 6.7e-06 54.7 58 51.7
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 6.7e-06 54.7 37 64.9
Cfa018638 Carpinus fangiana HOM05D002803 ORTHO05D003089 8.7e-06 54.3 54 50.0
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 8.7e-06 54.3 34 67.6


User provided reference genes

Program Settings