Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 7.9e-60 233.8 138 100.0
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 2.7e-52 208.8 140 85.0
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.0e-50 202.6 138 87.0
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 2.2e-49 199.1 140 85.7
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 6.3e-49 197.6 136 85.3
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 5.3e-48 194.5 105 94.3
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 1.0e-46 190.3 134 88.1
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 4.7e-44 181.4 105 91.4
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 3.0e-43 178.7 131 74.8
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 3.0e-35 152.1 136 71.3
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 2.2e-33 146.0 138 63.8
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 2.9e-25 119.0 105 59.0
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 8.3e-25 117.5 105 60.0
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.6e-23 113.2 105 58.1
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-23 112.8 105 60.0
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.7e-23 112.5 105 59.0
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 7.8e-23 110.9 105 58.1
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.8e-23 110.9 105 58.1
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.3e-22 110.2 111 57.7
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 1.3e-22 110.2 105 58.1
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.3e-22 110.2 111 57.7
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.7e-22 109.8 109 53.2
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 3.9e-22 108.6 107 56.1
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 5.0e-22 108.2 105 54.3
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 5.0e-22 108.2 105 60.0
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.6e-22 107.8 105 58.1
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 6.6e-22 107.8 107 56.1
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.5e-21 106.7 108 54.6
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.9e-21 106.3 105 56.2
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.9e-21 106.3 105 56.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.9e-21 106.3 105 54.3
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.5e-21 105.9 105 57.1
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 2.5e-21 105.9 105 56.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.5e-21 105.9 105 56.2
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.3e-21 105.5 110 53.6
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 3.3e-21 105.5 110 53.6
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 3.3e-21 105.5 105 57.1
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 3.3e-21 105.5 105 56.2
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 3.3e-21 105.5 109 54.1
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 3.3e-21 105.5 105 57.1
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 4.3e-21 105.1 102 56.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 4.3e-21 105.1 108 55.6
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 7.3e-21 104.4 105 55.2
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 7.3e-21 104.4 105 56.2
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.3e-21 104.4 109 55.0
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 7.3e-21 104.4 109 55.0
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 7.3e-21 104.4 105 56.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 7.3e-21 104.4 109 55.0
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 7.3e-21 104.4 105 55.2
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 7.3e-21 104.4 109 54.1
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-20 103.6 105 54.3
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-20 103.6 105 54.3
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.2e-20 103.6 105 54.3
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.2e-20 103.6 105 52.4
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-20 103.6 105 55.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.2e-20 103.6 112 55.4
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 2.1e-20 102.8 105 55.2
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 2.1e-20 102.8 105 55.2
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 2.1e-20 102.8 105 54.3
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 2.8e-20 102.4 105 54.3
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.8e-20 102.4 105 55.2
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.8e-20 102.4 108 56.5
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.8e-20 102.4 105 53.3
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.8e-20 102.4 105 55.2
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.6e-20 102.1 105 53.3
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.6e-20 102.1 105 53.3
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.6e-20 102.1 105 53.3
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 3.6e-20 102.1 105 53.3
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 4.7e-20 101.7 105 54.3
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 4.7e-20 101.7 105 52.4
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 4.7e-20 101.7 105 54.3
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 8.0e-20 100.9 109 53.2
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 8.0e-20 100.9 105 53.3
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.0e-19 100.5 109 52.3
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.4e-19 100.1 105 54.3
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.4e-19 100.1 105 53.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.4e-19 100.1 105 51.4
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.4e-19 100.1 109 52.3
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.4e-19 100.1 105 52.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.8e-19 99.8 109 52.3
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.3e-19 99.4 105 54.3
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 3.1e-19 99.0 108 51.9
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 3.1e-19 99.0 105 55.2
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.1e-19 99.0 105 54.3
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 6.8e-19 97.8 105 53.3
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 6.8e-19 97.8 101 55.4
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 6.8e-19 97.8 101 55.4
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 6.8e-19 97.8 101 55.4
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 6.8e-19 97.8 105 53.3
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 6.8e-19 97.8 109 50.5
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 8.9e-19 97.4 105 53.3
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 8.9e-19 97.4 105 54.3
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 8.9e-19 97.4 105 52.4
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 8.9e-19 97.4 102 53.9
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 8.9e-19 97.4 105 51.4
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 8.9e-19 97.4 105 51.4
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 8.9e-19 97.4 107 50.5
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 1.2e-18 97.1 101 55.4
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.2e-18 97.1 105 53.3
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.2e-18 97.1 105 55.2
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.5e-18 96.7 105 54.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.5e-18 96.7 105 53.3
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.5e-18 96.7 101 54.5
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.5e-18 96.7 101 54.5
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.5e-18 96.7 105 54.3
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.5e-18 96.7 125 47.2
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.6e-18 95.9 108 50.0
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 2.6e-18 95.9 108 50.9
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.6e-18 95.9 110 51.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 4.4e-18 95.1 105 49.5
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.4e-18 95.1 105 50.5
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 5.8e-18 94.7 105 51.4
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 5.8e-18 94.7 105 50.5
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 5.8e-18 94.7 105 50.5
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 5.8e-18 94.7 105 50.5
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 9.8e-18 94.0 108 50.0
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.3e-17 93.6 110 49.1
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.3e-17 93.6 111 47.7
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.3e-17 93.6 111 47.7
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.7e-17 93.2 105 49.5
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 6.4e-17 91.3 109 48.6
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 6.4e-17 91.3 107 53.3
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 8.3e-17 90.9 105 48.6
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.9e-16 89.7 102 51.0
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.9e-16 89.7 102 51.0
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.4e-16 89.4 105 52.4
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 4.1e-16 88.6 101 52.5
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.2e-15 87.0 110 49.1
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 7.8e-15 84.3 83 57.8
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.0e-14 84.0 100 52.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.0e-14 84.0 104 49.0
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.7e-14 83.2 96 49.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 8.6e-14 80.9 105 50.5
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.5e-13 79.3 105 45.7
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 3.3e-13 79.0 108 45.4
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 4.3e-13 78.6 104 47.1
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 7.3e-13 77.8 91 49.5
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.2e-12 77.0 100 51.0
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.6e-12 76.6 104 46.2
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 4.7e-12 75.1 103 47.6
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 4.7e-12 75.1 97 45.4
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 6.2e-12 74.7 105 43.8
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.1e-12 74.3 85 51.8
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.3e-11 72.8 103 45.6
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 3.4e-10 68.9 79 51.9
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.4e-10 68.9 49 67.3
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 7.5e-10 67.8 102 41.2
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 7.5e-10 67.8 96 44.8
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 2.2e-09 66.2 50 62.0
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 3.2e-08 62.4 48 60.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 9.2e-08 60.8 69 50.7
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.1e-07 59.7 44 63.6
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 2.3e-06 56.2 46 58.7
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 3.0e-06 55.8 46 56.5
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.9e-06 55.5 40 62.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 5.1e-06 55.1 93 40.9


User provided reference genes

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