Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 7.6e-195 684.9 804 100.0
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 2.7e-83 314.3 227 77.5
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 1.5e-41 175.6 136 75.7
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 9.7e-41 172.9 135 76.3
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.1e-39 169.5 135 76.3
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 6.9e-39 166.8 135 77.0
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 8.5e-37 159.8 137 73.7
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 6.1e-35 153.7 136 71.3
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.0e-34 152.9 103 78.6
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 1.4e-34 152.5 104 78.8
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 3.7e-32 144.4 188 47.9
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 4.8e-32 144.1 207 45.4
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.1e-31 141.4 241 38.2
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 9.1e-31 139.8 178 47.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 5.9e-30 137.1 181 47.5
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 5.9e-30 137.1 181 47.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 7.7e-30 136.7 245 40.8
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 7.7e-30 136.7 235 40.0
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 7.7e-30 136.7 235 40.0
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.0e-29 136.3 231 40.3
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 1.3e-29 136.0 174 47.7
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 1.3e-29 136.0 174 47.7
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.3e-29 136.0 241 41.9
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.7e-29 135.6 186 46.8
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.7e-29 135.6 167 48.5
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.2e-29 135.2 171 48.5
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.9e-29 134.8 171 48.0
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 5.0e-29 134.0 174 48.3
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 5.0e-29 134.0 169 47.3
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 5.0e-29 134.0 171 47.4
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 8.5e-29 133.3 187 44.9
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 1.1e-28 132.9 204 41.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 1.1e-28 132.9 234 39.7
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 1.1e-28 132.9 168 49.4
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.1e-28 132.9 169 46.7
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 1.1e-28 132.9 174 47.7
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.1e-28 132.9 191 43.5
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 1.9e-28 132.1 223 40.8
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 1.9e-28 132.1 160 46.9
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 1.9e-28 132.1 208 43.8
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.5e-28 131.7 186 46.2
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.5e-28 131.7 238 39.1
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 3.2e-28 131.3 230 42.2
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 3.2e-28 131.3 230 42.2
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 3.2e-28 131.3 198 42.4
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 3.2e-28 131.3 204 47.1
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 3.2e-28 131.3 244 37.7
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 4.2e-28 131.0 233 41.2
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 4.2e-28 131.0 174 47.1
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 4.2e-28 131.0 177 45.8
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 5.5e-28 130.6 231 40.3
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.5e-28 130.6 163 46.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 7.2e-28 130.2 184 46.7
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 7.2e-28 130.2 230 41.7
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 7.2e-28 130.2 232 40.5
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 7.2e-28 130.2 184 44.6
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 9.4e-28 129.8 169 47.9
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 9.4e-28 129.8 166 46.4
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.2e-27 129.4 178 45.5
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 1.6e-27 129.0 160 48.8
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.6e-27 129.0 191 44.0
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 1.6e-27 129.0 249 37.8
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 1.6e-27 129.0 230 39.6
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.1e-27 128.6 250 41.6
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 2.1e-27 128.6 246 41.9
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 2.1e-27 128.6 241 36.9
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 3.6e-27 127.9 164 44.5
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 4.7e-27 127.5 221 40.3
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 4.7e-27 127.5 233 37.8
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 8.0e-27 126.7 166 45.8
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.0e-26 126.3 197 42.6
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.0e-26 126.3 191 43.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.0e-26 126.3 191 43.5
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.0e-26 126.3 233 39.1
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 1.4e-26 125.9 234 37.2
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 1.8e-26 125.6 182 44.5
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.8e-26 125.6 235 40.4
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.8e-26 125.6 200 42.5
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.8e-26 125.6 164 45.7
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.3e-26 125.2 225 37.3
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 2.3e-26 125.2 193 43.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.3e-26 125.2 193 43.5
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.3e-26 125.2 209 41.1
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 2.3e-26 125.2 193 40.4
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 4.0e-26 124.4 170 46.5
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 5.2e-26 124.0 177 44.6
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.5e-25 122.5 221 40.7
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-25 122.5 170 46.5
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.5e-25 122.5 177 44.6
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.0e-25 122.1 223 38.6
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 2.6e-25 121.7 231 38.1
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 4.4e-25 120.9 177 44.1
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 4.4e-25 120.9 164 43.3
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 5.7e-25 120.6 223 39.5
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 5.7e-25 120.6 227 38.8
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 1.3e-24 119.4 177 44.1
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 1.7e-24 119.0 229 38.0
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.7e-24 119.0 185 43.2
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.8e-24 118.2 232 36.6
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 2.8e-24 118.2 239 35.6
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 2.8e-24 118.2 240 35.8
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.8e-24 118.2 185 43.2
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 3.7e-24 117.9 248 37.1
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 6.3e-24 117.1 135 56.3
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 1.4e-23 115.9 195 39.5
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.8e-23 115.5 227 37.0
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.8e-23 115.5 185 42.7
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 5.9e-22 110.5 241 34.4
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.0e-21 109.8 236 38.1
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 2.2e-21 108.6 103 54.4
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 6.5e-21 107.1 106 54.7
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.1e-20 106.3 197 39.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 5.5e-20 104.0 113 53.1
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 1.2e-19 102.8 103 55.3
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.6e-19 102.4 107 53.3
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 2.7e-19 101.7 172 41.3
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 2.7e-19 101.7 103 54.4
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 4.7e-19 100.9 147 41.5
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 1.0e-18 99.8 114 50.0
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.0e-18 99.8 103 53.4
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 1.4e-18 99.4 103 53.4
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 1.8e-18 99.0 159 42.8
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.3e-18 98.6 161 39.8
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.3e-18 98.6 161 39.8
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 3.0e-18 98.2 114 49.1
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 8.8e-18 96.7 151 42.4
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 2.0e-17 95.5 139 46.8
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 9.8e-17 93.2 103 46.6
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 9.8e-17 93.2 107 50.5
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 9.8e-17 93.2 109 51.4
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.8e-16 91.7 171 40.4
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.7e-16 91.3 101 47.5
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 3.7e-16 91.3 103 53.4
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 4.8e-16 90.9 95 52.6
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.4e-15 88.6 111 48.6
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 3.1e-15 88.2 230 33.5
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 4.1e-15 87.8 91 52.7
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.6e-14 85.9 103 49.5
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.6e-14 85.9 172 38.4
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 1.6e-14 85.9 100 50.0
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 4.5e-14 84.3 105 44.8
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 4.5e-14 84.3 96 47.9
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 7.7e-14 83.6 184 36.4
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 2.9e-13 81.6 111 45.0
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 3.8e-13 81.3 168 36.3
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.8e-13 81.3 104 48.1
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 5.0e-13 80.9 170 37.1
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.5e-12 78.6 109 47.7
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 9.5e-12 76.6 105 44.8
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.2e-11 76.3 97 45.4
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 1.2e-11 76.3 107 43.9
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.6e-11 75.9 89 48.3
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.7e-11 75.1 105 42.9
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.1e-07 63.2 89 44.9
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 2.7e-06 58.5 30 80.0


User provided reference genes

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