Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb204550 Zea mays HOM05D007451 ORTHO05D009399 1.2e-83 313.5 216 100.0
MBI07_g23439_MAGBIO Magnolia biondii HOM05D007451 ORTHO05D009399 1.8e-26 123.6 208 43.8
Os02g0244000 Oryza sativa ssp. japonica HOM05D007451 ORTHO05D009399 1.2e-25 120.9 97 75.3
TAR624G0819 Trochodendron aralioides HOM05D007451 ORTHO05D009399 1.3e-21 107.5 205 40.5
GSVIVG01021497001 Vitis vinifera HOM05D007451 ORTHO05D009399 2.8e-19 99.8 199 39.2
Manes.17G070400 Manihot esculenta HOM05D007451 ORTHO05D009399 6.9e-18 95.1 218 35.8
Nn4g26566 Nelumbo nucifera HOM05D007451 ORTHO05D009399 1.5e-17 94.0 202 44.1
CiPaw.10G091600 Carya illinoinensis HOM05D007451 ORTHO05D009399 2.9e-16 89.7 199 37.2
Aqoxy1G01697 Aquilegia oxysepala HOM05D007451 ORTHO05D009399 4.9e-16 89.0 203 40.9
TWI73G0492 Tripterygium wilfordii HOM05D007451 ORTHO05D009399 1.1e-15 87.8 225 39.6
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.4e-15 87.4 199 37.7
Potri.004G132600 Populus trichocarpa HOM05D007451 ORTHO05D009399 3.2e-15 86.3 198 35.9
RcHm_v2.0_Chr5g0014241 Rosa chinensis HOM05D007451 ORTHO05D009399 5.5e-15 85.5 195 37.9
PSO675G9053 Papaver somniferum HOM05D007451 ORTHO05D009399 7.1e-15 85.1 204 36.3
Medtr4g084470 Medicago truncatula HOM05D007451 ORTHO05D009399 1.2e-14 84.3 199 36.2
HanXRQChr04g0114281 Helianthus annuus HOM05D007451 ORTHO05D009399 1.6e-14 84.0 205 34.6
PSO541G4911 Papaver somniferum HOM05D007451 ORTHO05D009399 1.6e-14 84.0 204 35.3
Lsat_1_v5_gn_7_28421 Lactuca sativa HOM05D007451 ORTHO05D009399 4.6e-14 82.4 205 34.6
Lj1C1189G10 Lonicera japonica HOM05D007451 ORTHO05D009399 6.0e-14 82.0 206 33.0
Sc17g0004890 Simmondsia chinensis HOM05D007451 ORTHO05D009399 1.8e-13 80.5 199 34.7
Thecc.06G150100 Theobroma cacao HOM05D007451 ORTHO05D009399 1.8e-13 80.5 208 34.6
arahy.Tifrunner.gnm1.ann1.ZU2BT9 Arachis hypogaea HOM05D007451 ORTHO05D009399 2.3e-13 80.1 208 33.2
Phvul.002G096800 Phaseolus vulgaris HOM05D007451 ORTHO05D009399 2.3e-13 80.1 217 34.6
CANSAT35G1195 Cannabis sativa HOM05D007451 ORTHO05D009399 3.9e-13 79.3 199 34.7
VMungo0251G0908 Vigna mungo HOM05D007451 ORTHO05D009399 3.9e-13 79.3 208 35.1
EL10Ac8g19670 Beta vulgaris HOM05D007451 ORTHO05D009399 6.7e-13 78.6 199 35.2
Ciclev10018276m.g Citrus clementina HOM05D007451 ORTHO05D009399 1.1e-12 77.8 211 34.1
Actinidia07699 Actinidia chinensis HOM05D007451 ORTHO05D009399 1.5e-12 77.4 198 42.4
FAN21G0862 Fragaria x ananassa HOM05D007451 ORTHO05D009399 1.5e-12 77.4 214 35.0
Psat7g130000 Pisum sativum HOM05D007451 ORTHO05D009399 2.5e-12 76.6 199 34.2
ECA246G3905 Erigeron canadensis HOM05D007451 ORTHO05D009399 3.3e-12 76.3 205 32.2
EL10Ac8g19669 Beta vulgaris HOM05D007451 ORTHO05D009399 5.7e-12 75.5 199 34.2
Prupe.4G081100 Prunus persica HOM05D007451 ORTHO05D009399 9.6e-12 74.7 208 33.7
TPR.G38261 Trifolium pratense HOM05D007451 ORTHO05D009399 1.6e-11 73.9 123 44.7
MD05G1283500 Malus domestica HOM05D007451 ORTHO05D009399 3.7e-11 72.8 199 35.2
Nitab4.5_0003044g0100 Nicotiana tabacum HOM05D007451 ORTHO05D009399 3.7e-11 72.8 205 32.2
Oeu031273.1 Olea europaea HOM05D007451 ORTHO05D009399 3.7e-11 72.8 208 33.2
CSS0045800 Camellia sinensis var. sinensis HOM05D007451 ORTHO05D009399 1.1e-10 71.2 119 42.9
arahy.Tifrunner.gnm1.ann1.Z8IVUX Arachis hypogaea HOM05D007451 ORTHO05D009399 1.8e-10 70.5 229 31.0
FAN11G0575 Fragaria x ananassa HOM05D007451 ORTHO05D009399 1.8e-10 70.5 197 33.0
Eucgr.E03355 Eucalyptus grandis HOM05D007451 ORTHO05D009399 4.1e-10 69.3 120 45.8
Rhsim02G0158600 Rhododendron simsii HOM05D007451 ORTHO05D009399 6.9e-10 68.6 219 31.5
BcaC02g11529 Brassica carinata HOM05D007451 ORTHO05D009399 1.0e-08 64.7 125 39.2
CARHR128670 Cardamine hirsuta HOM05D007451 ORTHO05D009399 2.2e-08 63.5 125 36.8
Thhalv10017344m.g Eutrema salsugineum HOM05D007451 ORTHO05D009399 2.9e-08 63.2 125 38.4
Sp4g16840 Schrenkiella parvula HOM05D007451 ORTHO05D009399 2.9e-08 63.2 119 38.7
AL4G30550 Arabidopsis lyrata HOM05D007451 ORTHO05D009399 5.0e-08 62.4 125 37.6
Cfa000938 Carpinus fangiana HOM05D007451 ORTHO05D009399 5.0e-08 62.4 205 33.7
BcaB02g09525 Brassica carinata HOM05D007451 ORTHO05D009399 1.4e-07 60.8 119 39.5
AT2G34580 Arabidopsis thaliana HOM05D007451 ORTHO05D009399 1.9e-07 60.5 125 37.6
Glyma.20G018400 Glycine max HOM05D007451 ORTHO05D009399 5.5e-07 58.9 120 40.0
Nitab4.5_0003838g0080 Nicotiana tabacum HOM05D007451 ORTHO05D009399 5.5e-07 58.9 198 30.3
THA.LOC104814695 Tarenaya hassleriana HOM05D007451 ORTHO05D009399 7.2e-07 58.5 120 41.7
Carub.0004s1625 Capsella rubella HOM05D007451 ORTHO05D009399 9.3e-07 58.2 119 38.7
CAN.G65.121 Capsicum annuum HOM05D007451 ORTHO05D009399 1.2e-06 57.8 205 30.7
Duzib192G0695 Durio zibethinus HOM05D007451 ORTHO05D009399 1.6e-06 57.4 75 50.7
Gohir.D10G042000 Gossypium hirsutum HOM05D007451 ORTHO05D009399 1.6e-06 57.4 199 30.7
Gorai.011G044600 Gossypium raimondii HOM05D007451 ORTHO05D009399 1.6e-06 57.4 199 30.7
AUR62030193 Chenopodium quinoa HOM05D007451 ORTHO05D009399 2.1e-06 57.0 199 31.7
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 2.7e-06 56.6 194 32.0
Lalb_Chr16g0385141 Lupinus albus HOM05D007451 ORTHO05D009399 2.7e-06 56.6 205 31.2
AUR62002741 Chenopodium quinoa HOM05D007451 ORTHO05D009399 3.6e-06 56.2 199 31.2
Sabra04G0085400 Salix brachista HOM05D007451 ORTHO05D009399 3.6e-06 56.2 145 34.5


User provided reference genes

Program Settings