Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 6.1e-197 691.4 609 100.0
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 7.9e-136 488.4 635 85.5
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 5.2e-63 246.5 273 57.1
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 2.1e-24 118.2 230 41.3
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.4e-23 114.8 260 38.8
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 2.4e-23 114.8 242 37.2
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 2.4e-23 114.8 306 35.6
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 3.1e-23 114.4 260 38.8
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 4.0e-23 114.0 236 39.4
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 2.0e-22 111.7 252 36.1
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 3.4e-22 110.9 249 39.8
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 3.4e-22 110.9 268 34.0
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 4.5e-22 110.5 249 37.8
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 4.5e-22 110.5 142 50.7
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 5.8e-22 110.2 246 36.6
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 1.3e-21 109.0 250 38.0
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 3.8e-21 107.5 250 35.2
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 3.8e-21 107.5 233 39.5
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.8e-21 107.5 264 36.4
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 4.9e-21 107.1 254 37.4
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 6.5e-21 106.7 248 36.3
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 6.5e-21 106.7 222 39.2
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 8.4e-21 106.3 240 37.5
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.1e-20 105.9 244 37.3
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.1e-20 105.9 300 33.3
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 1.9e-20 105.1 252 36.9
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.9e-20 105.1 298 33.2
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.5e-20 104.8 222 40.1
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 3.2e-20 104.4 255 35.7
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 4.2e-20 104.0 252 37.3
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 4.2e-20 104.0 255 36.9
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 5.5e-20 103.6 303 33.3
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 9.3e-20 102.8 294 32.0
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 9.3e-20 102.8 252 38.1
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 9.3e-20 102.8 295 32.9
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 1.2e-19 102.4 235 37.4
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.7e-19 101.3 235 38.3
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 6.0e-19 100.1 246 35.0
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 1.0e-18 99.4 231 36.4
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 3.0e-18 97.8 248 35.1
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 8.7e-18 96.3 256 34.4
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 1.1e-17 95.9 255 34.9
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 1.1e-17 95.9 231 36.8
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 1.9e-17 95.1 265 34.7
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 2.5e-17 94.7 246 35.4
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 2.5e-17 94.7 246 35.4
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 3.3e-17 94.4 244 34.0
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 4.3e-17 94.0 266 33.5
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 5.7e-17 93.6 279 35.1
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 5.7e-17 93.6 279 35.1
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 7.4e-17 93.2 266 33.5
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 9.7e-17 92.8 270 34.1
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.3e-16 92.4 228 32.9
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 1.3e-16 92.4 181 39.8
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 1.3e-16 92.4 219 37.9
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.6e-16 92.0 236 35.6
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.6e-16 92.0 265 35.8
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.2e-16 91.7 268 34.3
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 2.2e-16 91.7 247 32.0
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 2.2e-16 91.7 213 39.0
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 2.8e-16 91.3 248 35.1
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 3.7e-16 90.9 200 35.5
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 4.8e-16 90.5 252 36.1
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 6.3e-16 90.1 256 33.2
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 6.3e-16 90.1 256 33.2
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 8.2e-16 89.7 238 34.5
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 8.2e-16 89.7 253 32.0
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 1.4e-15 89.0 185 38.9
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 1.4e-15 89.0 245 33.5
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.8e-15 88.6 235 33.6
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 2.4e-15 88.2 259 33.6
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 2.4e-15 88.2 258 36.0
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 2.4e-15 88.2 255 33.7
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 6.9e-15 86.7 236 33.9
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 6.9e-15 86.7 286 32.9
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 9.0e-15 86.3 284 32.7
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.2e-14 85.9 189 37.6
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.2e-14 85.9 235 34.5
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 1.2e-14 85.9 245 34.7
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 1.5e-14 85.5 227 35.7
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 2.0e-14 85.1 179 39.1
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.0e-14 85.1 238 33.6
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 2.6e-14 84.7 236 32.6
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 2.6e-14 84.7 247 31.2
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 4.5e-14 84.0 244 36.5
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 4.5e-14 84.0 244 36.5
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 5.9e-14 83.6 238 33.2
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 5.9e-14 83.6 245 36.3
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.9e-14 83.6 283 32.5
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.9e-14 83.6 283 32.5
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 7.6e-14 83.2 192 35.9
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 7.6e-14 83.2 219 34.2
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 1.3e-13 82.4 239 32.2
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.2e-13 81.6 192 34.9
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 2.2e-13 81.6 252 34.5
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 2.2e-13 81.6 235 35.3
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 2.9e-13 81.3 242 34.7
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 2.9e-13 81.3 231 33.8
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 3.8e-13 80.9 239 32.6
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 3.8e-13 80.9 270 31.1
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 3.8e-13 80.9 223 33.2
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 5.0e-13 80.5 283 30.4
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 8.5e-13 79.7 243 32.5
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 8.5e-13 79.7 216 34.7
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 8.5e-13 79.7 181 37.0
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.4e-12 79.0 236 34.3
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 1.4e-12 79.0 242 32.2
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 1.4e-12 79.0 244 30.7
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.9e-12 78.6 241 34.9
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 3.2e-12 77.8 248 31.9
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 3.2e-12 77.8 238 34.9
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 4.2e-12 77.4 201 35.3
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 4.2e-12 77.4 218 34.9
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 5.5e-12 77.0 255 33.3
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 7.2e-12 76.6 282 30.1
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 9.3e-12 76.3 152 39.5
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 9.3e-12 76.3 208 35.1
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 9.3e-12 76.3 184 37.0
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 1.6e-11 75.5 265 30.2
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 1.6e-11 75.5 218 33.0
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.7e-11 74.7 263 31.2
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 3.6e-11 74.3 235 32.8
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 6.1e-11 73.6 178 36.5
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 6.1e-11 73.6 181 35.9
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 6.1e-11 73.6 216 33.8
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 7.9e-11 73.2 217 35.5
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 1.0e-10 72.8 263 30.4
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 1.4e-10 72.4 215 33.0
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 1.8e-10 72.0 228 32.5
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.8e-10 72.0 206 35.4
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 3.0e-10 71.2 229 33.2
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.1e-10 70.5 241 34.0
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 5.1e-10 70.5 246 30.9
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 5.1e-10 70.5 214 32.7
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 8.8e-10 69.7 293 31.1
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 1.1e-09 69.3 207 33.3
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 1.5e-09 68.9 174 36.2
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 3.3e-09 67.8 296 30.4
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 3.3e-09 67.8 242 29.8
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 4.3e-09 67.4 174 33.3
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 4.3e-09 67.4 269 29.4
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 5.7e-09 67.0 150 38.7
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 7.4e-09 66.6 171 36.8
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 7.4e-09 66.6 286 30.4
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 9.7e-09 66.2 146 37.7
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 9.7e-09 66.2 177 33.9
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 1.7e-08 65.5 177 34.5
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 1.7e-08 65.5 142 37.3
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 1.7e-08 65.5 253 30.8
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 2.2e-08 65.1 134 39.6
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.8e-08 64.7 274 27.4
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 2.8e-08 64.7 208 31.2
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 4.8e-08 63.9 218 30.7
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 6.3e-08 63.5 289 29.4
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 8.2e-08 63.2 239 31.4
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 8.2e-08 63.2 273 31.1
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 1.4e-07 62.4 210 32.4
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 1.8e-07 62.0 175 34.9
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 1.8e-07 62.0 174 31.0
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 3.1e-07 61.2 217 33.2
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 3.1e-07 61.2 129 34.1
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 3.1e-07 61.2 151 36.4
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.1e-07 60.8 142 37.3
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 4.1e-07 60.8 185 31.9
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 4.1e-07 60.8 104 40.4
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 5.3e-07 60.5 117 39.3
DCAR_020295 Daucus carota HOM05D003548 ORTHO05D004066 6.9e-07 60.1 125 31.2
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 6.9e-07 60.1 115 38.3
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 6.9e-07 60.1 247 29.6
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.2e-06 59.3 93 39.8
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.5e-06 58.9 111 40.5
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.5e-06 58.9 240 32.1
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.5e-06 58.9 217 33.2
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 2.0e-06 58.5 218 30.7
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.6e-06 58.2 98 38.8
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.6e-06 58.2 269 28.6
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 2.6e-06 58.2 269 28.6
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 2.6e-06 58.2 222 33.3
HanXRQChr15g0493381 Helianthus annuus HOM05D003548 ORTHO05D004066 3.4e-06 57.8 212 31.6
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 5.9e-06 57.0 100 41.0


User provided reference genes

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