Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb201160 Zea mays HOM05D000023 ORTHO05D010901 2.9e-77 292.0 164 100.0
Zm00001eb220690 Zea mays HOM05D000023 ORTHO05D000014 2.3e-29 132.9 88 64.8
Os01g0379800 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 1.7e-24 116.7 85 61.2
Os05g0232800 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 1.7e-24 116.7 85 61.2
Os05g0256350 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 1.7e-24 116.7 85 61.2
Os10g0549900 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 1.7e-24 116.7 85 61.2
Os12g0537000 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 1.7e-24 116.7 85 61.2
Os12g0538000 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 1.7e-24 116.7 85 61.2
Os12g0538066 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 1.7e-24 116.7 85 61.2
Os01g0722550 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 2.9e-24 115.9 85 61.2
Os11g0500100 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 4.6e-22 108.6 79 58.2
Zm00001eb221320 Zea mays HOM05D036183 ORTHO05D010901 1.1e-10 70.9 82 40.2
CiPaw.01G084200 Carya illinoinensis HOM05D000023 ORTHO05D000014 4.4e-09 65.5 91 42.9
CiPaw.13G061100 Carya illinoinensis HOM05D000023 ORTHO05D000014 5.8e-09 65.1 99 41.4
COL.COLO4_23146 Corchorus olitorius HOM05D000023 ORTHO05D000014 7.6e-09 64.7 64 51.6
Duzib133G0799 Durio zibethinus HOM05D000023 ORTHO05D000014 7.6e-09 64.7 64 51.6
Thecc.01G323700 Theobroma cacao HOM05D000023 ORTHO05D000014 7.6e-09 64.7 64 51.6
Atru.chr5.885 Acer truncatum HOM05D000023 ORTHO05D000014 1.3e-08 63.9 64 51.6
Eucgr.B02527 Eucalyptus grandis HOM05D000023 ORTHO05D000014 1.3e-08 63.9 82 45.1
Gohir.A12G120650 Gossypium hirsutum HOM05D000023 ORTHO05D000014 1.3e-08 63.9 64 50.0
Gohir.D12G124401 Gossypium hirsutum HOM05D000023 ORTHO05D000014 1.3e-08 63.9 64 50.0
Gorai.008G135400 Gossypium raimondii HOM05D000023 ORTHO05D000014 1.3e-08 63.9 64 50.0
Manes.01G233700 Manihot esculenta HOM05D000023 ORTHO05D000014 1.7e-08 63.5 64 51.6
Cpa.g.sc519.2 Carica papaya HOM05D000023 ORTHO05D000014 2.2e-08 63.2 64 51.6
Atru.chr5.888 Acer truncatum HOM05D000023 ORTHO05D000014 2.9e-08 62.8 64 51.6
CiPaw.15G074600 Carya illinoinensis HOM05D000023 ORTHO05D000014 2.9e-08 62.8 91 41.8
PGR042G0167 Punica granatum HOM05D000023 ORTHO05D000014 2.9e-08 62.8 82 43.9
Sabra02G0166900 Salix brachista HOM05D000023 ORTHO05D000014 4.9e-08 62.0 82 43.9
Ciclev10024195m.g Citrus clementina HOM05D000023 ORTHO05D000014 6.4e-08 61.6 60 50.0
MBI18_g10388_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 1.1e-07 60.8 64 48.4
Lj6g0007513 Lotus japonicus HOM05D000023 ORTHO05D000014 1.4e-07 60.5 64 48.4
Potri.002G188400 Populus trichocarpa HOM05D000023 ORTHO05D000014 1.4e-07 60.5 60 50.0
Potri.014G114100 Populus trichocarpa HOM05D000023 ORTHO05D000014 1.4e-07 60.5 60 50.0
Sabra14G0084200 Salix brachista HOM05D000023 ORTHO05D000014 1.4e-07 60.5 60 50.0
arahy.Tifrunner.gnm1.ann1.GKHQ6E Arachis hypogaea HOM05D000023 ORTHO05D000014 1.9e-07 60.1 79 41.8
arahy.Tifrunner.gnm1.ann1.W645MI Arachis hypogaea HOM05D000023 ORTHO05D000014 1.9e-07 60.1 79 41.8
Rhsim03G0000500 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.9e-07 60.1 93 30.1
CSS0005925 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 2.4e-07 59.7 82 35.4
CiPaw.05G170000 Carya illinoinensis HOM05D000023 ORTHO05D000014 2.4e-07 59.7 91 42.9
Lalb_Chr23g0276071 Lupinus albus HOM05D000023 ORTHO05D000014 2.4e-07 59.7 79 39.2
MBI19_g32734_MAGBIO Magnolia biondii HOM05D000023 ORTHO05D000014 2.4e-07 59.7 64 46.9
MD13G1139200 Malus domestica HOM05D000023 ORTHO05D000014 2.4e-07 59.7 64 46.9
MD16G1136600 Malus domestica HOM05D000023 ORTHO05D000014 2.4e-07 59.7 64 46.9
PGR044G1170 Punica granatum HOM05D000023 ORTHO05D000014 2.4e-07 59.7 81 40.7
Aqoxy5G02793 Aquilegia oxysepala HOM05D000023 ORTHO05D000014 3.2e-07 59.3 64 46.9
PGR102G1141 Punica granatum HOM05D000023 ORTHO05D000014 3.2e-07 59.3 82 42.7
CSS0008819 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 46.9
CiPaw.03G065700 Carya illinoinensis HOM05D000023 ORTHO05D000014 4.2e-07 58.9 68 45.6
Dinv18021 Davidia involucrata HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 46.9
ECA233G3146 Erigeron canadensis HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 48.4
Glyma.09G079100 Glycine max HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 46.9
Glyma.15G187500 Glycine max HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 46.9
HanXRQChr17g0565901 Helianthus annuus HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 48.4
Hma1.2p1_0013F.1_g007920 Hydrangea macrophylla HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 46.9
PGR142G0273 Punica granatum HOM05D000023 ORTHO05D000014 4.2e-07 58.9 69 42.0
GSVIVG01017686001 Vitis vinifera HOM05D000023 ORTHO05D000014 4.2e-07 58.9 64 46.9
MSTRG.10183 Avicennia marina HOM05D000023 ORTHO05D000014 5.4e-07 58.5 64 48.4
Oeu022707.2 Olea europaea HOM05D000023 ORTHO05D000014 5.4e-07 58.5 82 42.7
Atru.chr4.3145 Acer truncatum HOM05D000023 ORTHO05D000014 7.1e-07 58.2 82 40.2
COL.COLO4_34127 Corchorus olitorius HOM05D048154 ORTHO05D002750 7.1e-07 58.2 73 41.1
FvH4_5g00491 Fragaria vesca HOM05D000023 ORTHO05D000014 7.1e-07 58.2 81 30.9
PGR031G0470 Punica granatum HOM05D000023 ORTHO05D000014 7.1e-07 58.2 76 42.1
RcHm_v2.0_Chr7g0202011 Rosa chinensis HOM05D000023 ORTHO05D000014 7.1e-07 58.2 83 31.3
CANSAT80G1619 Cannabis sativa HOM05D000023 ORTHO05D000014 9.3e-07 57.8 64 46.9
Nitab4.5_0000098g0210 Nicotiana tabacum HOM05D000023 ORTHO05D000014 9.3e-07 57.8 64 46.9
QL06p014182 Quercus lobata HOM05D000023 ORTHO05D000014 9.3e-07 57.8 64 46.9
AL3G30530 Arabidopsis lyrata HOM05D000023 ORTHO05D000014 1.2e-06 57.4 65 46.2
CiPaw.01G129600 Carya illinoinensis HOM05D000023 ORTHO05D000014 1.2e-06 57.4 64 45.3
CDE06G2340 Ceratophyllum demersum HOM05D000023 ORTHO05D000014 1.2e-06 57.4 64 46.9
PGR102G0123 Punica granatum HOM05D000023 ORTHO05D000014 1.2e-06 57.4 70 44.3
PGR142G2542 Punica granatum HOM05D000023 ORTHO05D000014 1.2e-06 57.4 70 44.3
Rhsim04G0165800 Rhododendron simsii HOM05D000023 ORTHO05D000014 1.2e-06 57.4 82 39.0
Sed0009568 Sechium edule HOM05D000023 ORTHO05D000014 1.2e-06 57.4 69 30.4
SGA_v2.0_scaffold64G22025 Striga asiatica HOM05D000023 ORTHO05D000014 1.2e-06 57.4 64 46.9
TWI09G0737 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 1.2e-06 57.4 64 45.3
VMungo1309G1890 Vigna mungo HOM05D000023 ORTHO05D000014 1.2e-06 57.4 82 39.0
Aa31LG8G4400 Aethionema arabicum HOM05D000023 ORTHO05D000014 1.6e-06 57.0 75 40.0
ClCG05G006860 Citrullus lanatus HOM05D000023 ORTHO05D000014 1.6e-06 57.0 56 48.2
MELO3C006750.2 Cucumis melo HOM05D000023 ORTHO05D000014 1.6e-06 57.0 56 48.2
CsaV3_3G015520 Cucumis sativus L. HOM05D000023 ORTHO05D000014 1.6e-06 57.0 56 48.2
Prupe.1G105600 Prunus persica HOM05D000023 ORTHO05D000014 1.6e-06 57.0 62 45.2
PGR031G2722 Punica granatum HOM05D000023 ORTHO05D000014 1.6e-06 57.0 69 31.9
PGR042G3428 Punica granatum HOM05D000023 ORTHO05D000014 1.6e-06 57.0 82 42.7
PGR102G0008 Punica granatum HOM05D000023 ORTHO05D000014 1.6e-06 57.0 70 42.9
RcHm_v2.0_Chr4g0427461 Rosa chinensis HOM05D000023 ORTHO05D000014 1.6e-06 57.0 82 41.5
Sed0003236 Sechium edule HOM05D000023 ORTHO05D000014 1.6e-06 57.0 73 42.5
Ah.13g073040 Amaranthus hybridus HOM05D000023 ORTHO05D000014 2.1e-06 56.6 75 41.3
AT3G17450 Arabidopsis thaliana HOM05D000023 ORTHO05D000014 2.1e-06 56.6 82 41.5
C01p46790 Brassica napus HOM05D000023 ORTHO05D000014 2.1e-06 56.6 75 40.0
BolC1t04652H Brassica oleracea HOM05D000023 ORTHO05D000014 2.1e-06 56.6 75 40.0
CANSAT21G0240 Cannabis sativa HOM05D000023 ORTHO05D000014 2.1e-06 56.6 68 30.9
FvH4_4g21491 Fragaria vesca HOM05D000023 ORTHO05D000014 2.1e-06 56.6 62 45.2
Nn4g26353 Nelumbo nucifera HOM05D000023 ORTHO05D000014 2.1e-06 56.6 86 31.4
QL12p034506 Quercus lobata HOM05D000023 ORTHO05D000014 2.1e-06 56.6 68 44.1
MSTRG.23368 Avicennia marina HOM05D000023 ORTHO05D000014 2.7e-06 56.2 86 37.2
EL10Ac3g06256 Beta vulgaris HOM05D000023 ORTHO05D000014 2.7e-06 56.2 75 41.3
CiPaw.09G222200 Carya illinoinensis HOM05D000023 ORTHO05D000014 2.7e-06 56.2 67 41.8
Cc08_g13130 Coffea canephora HOM05D000023 ORTHO05D000014 2.7e-06 56.2 81 29.6
MELO3C032274.2 Cucumis melo HOM05D000023 ORTHO05D000014 2.7e-06 56.2 81 29.6
CsaV3_3G003120 Cucumis sativus L. HOM05D000023 ORTHO05D000014 2.7e-06 56.2 81 29.6
Migut.G00001 Erythranthe guttata HOM05D000023 ORTHO05D000014 2.7e-06 56.2 64 45.3
Migut.O00402 Erythranthe guttata HOM05D000023 ORTHO05D000014 2.7e-06 56.2 64 45.3
MBI09_g17303_MAGBIO Magnolia biondii HOM05D011018 ORTHO05D010901 2.7e-06 56.2 85 31.8
PGR004G2136 Punica granatum HOM05D000023 ORTHO05D000014 2.7e-06 56.2 77 42.9
GSVIVG01007419001 Vitis vinifera HOM05D000023 ORTHO05D000014 2.7e-06 56.2 83 30.1
Zm00001eb252520 Zea mays HOM05D004043 ORTHO05D002193 2.7e-06 56.2 73 38.4
Atru.chr9.374 Acer truncatum HOM05D000023 ORTHO05D000014 3.5e-06 55.8 76 36.8
arahy.Tifrunner.gnm1.ann1.9X525K Arachis hypogaea HOM05D000023 ORTHO05D009998 3.5e-06 55.8 137 32.8
arahy.Tifrunner.gnm1.ann1.YAYV9Q Arachis hypogaea HOM05D000023 ORTHO05D009998 3.5e-06 55.8 58 48.3
AUR62002557 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.5e-06 55.8 75 41.3
AUR62029977 Chenopodium quinoa HOM05D000023 ORTHO05D000014 3.5e-06 55.8 75 41.3
Ciclev10004312m.g Citrus clementina HOM05D000023 ORTHO05D000014 3.5e-06 55.8 82 40.2
COL.COLO4_16408 Corchorus olitorius HOM05D000023 ORTHO05D009998 3.5e-06 55.8 76 43.4
Thhalv10020031m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 3.5e-06 55.8 64 45.3
Glyma.09G064900 Glycine max HOM05D000023 ORTHO05D000014 3.5e-06 55.8 70 41.4
MBI16_g22439_MAGBIO Magnolia biondii HOM05D008925 ORTHO05D009195 3.5e-06 55.8 60 41.7
Sc25g0002160 Simmondsia chinensis HOM05D000023 ORTHO05D000014 3.5e-06 55.8 56 46.4
TAR726G0002 Trochodendron aralioides HOM05D001049 ORTHO05D002750 3.5e-06 55.8 69 40.6
A01p36900 Brassica napus HOM05D000023 ORTHO05D000014 4.6e-06 55.5 73 41.1
CSS0035116 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 4.6e-06 55.5 69 31.9
Ca_02356_v3 Cicer arietinum L. HOM05D000023 ORTHO05D000014 4.6e-06 55.5 79 39.2
MBI02_g15960_MAGBIO Magnolia biondii HOM05D011018 ORTHO05D010901 4.6e-06 55.5 84 31.0
Psat1g017480 Pisum sativum HOM05D000023 ORTHO05D000014 4.6e-06 55.5 79 39.2
THA.LOC104802620 Tarenaya hassleriana HOM05D000023 ORTHO05D000014 4.6e-06 55.5 139 33.8
TPR.G24695 Trifolium pratense HOM05D000023 ORTHO05D000014 4.6e-06 55.5 79 39.2
Atru.chr9.1405 Acer truncatum HOM05D000023 ORTHO05D000014 6.0e-06 55.1 81 28.4
BraA01t03749Z Brassica rapa HOM05D000023 ORTHO05D000014 6.0e-06 55.1 73 41.1
ECA234G0550 Erigeron canadensis HOM05D000023 ORTHO05D000014 6.0e-06 55.1 64 40.6
PGR031G2723 Punica granatum HOM05D000023 ORTHO05D000014 6.0e-06 55.1 82 41.5
Thecc.04G312700 Theobroma cacao HOM05D000023 ORTHO05D000014 6.0e-06 55.1 80 40.0
Nitab4.5_0001707g0100 Nicotiana tabacum HOM05D000023 ORTHO05D013611 7.8e-06 54.7 83 30.1
Nitab4.5_0001707g0130 Nicotiana tabacum HOM05D000023 ORTHO05D000014 7.8e-06 54.7 83 30.1
Nitab4.5_0001816g0230 Nicotiana tabacum HOM05D000023 ORTHO05D000014 7.8e-06 54.7 83 30.1
Sp3g15620 Schrenkiella parvula HOM05D000023 ORTHO05D000014 7.8e-06 54.7 79 39.2
Solyc08g007470.2 Solanum lycopersicum HOM05D000023 ORTHO05D000014 7.8e-06 54.7 81 29.6
PGSC0003DMG401012482 Solanum tuberosum HOM05D000023 ORTHO05D000014 7.8e-06 54.7 81 28.4


User provided reference genes

Program Settings