Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb200940 Zea mays HOM05D006254 ORTHO05D007409 1.8e-281 971.8 466 100.0
Os11g0175500 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 7.2e-214 747.3 508 72.6
Cfa002251 Carpinus fangiana HOM05D006254 ORTHO05D007409 6.6e-151 538.1 459 54.9
Sc20g0000720 Simmondsia chinensis HOM05D006254 ORTHO05D007409 9.0e-148 527.7 487 54.8
QL10p038598 Quercus lobata HOM05D006254 ORTHO05D007409 1.4e-145 520.4 474 53.0
Prupe.6G059200 Prunus persica HOM05D006254 ORTHO05D007409 5.4e-145 518.5 473 52.6
GSVIVG01000233001 Vitis vinifera HOM05D003183 ORTHO05D007409 9.3e-145 517.7 462 53.9
CiPaw.04G178100 Carya illinoinensis HOM05D006254 ORTHO05D007409 2.7e-144 516.2 459 52.5
Dinv02479 Davidia involucrata HOM05D006254 ORTHO05D007409 2.7e-144 516.2 459 53.6
Potri.004G137900 Populus trichocarpa HOM05D006254 ORTHO05D007409 6.0e-144 515.0 474 53.0
TAR628G1014 Trochodendron aralioides HOM05D006254 ORTHO05D007409 7.9e-144 514.6 460 52.8
MD03G1072300 Malus domestica HOM05D006254 ORTHO05D007409 2.8e-141 506.1 472 51.3
ECA248G3109 Erigeron canadensis HOM05D006254 ORTHO05D007409 3.7e-141 505.8 473 53.3
Lalb_Chr12g0202731 Lupinus albus HOM05D006254 ORTHO05D007409 1.4e-140 503.8 473 51.4
PGR119G0951 Punica granatum HOM05D006254 ORTHO05D007409 2.4e-140 503.1 472 51.9
FvH4_3g38370 Fragaria vesca HOM05D006254 ORTHO05D007409 4.5e-139 498.8 488 50.8
Lj4g0026953 Lotus japonicus HOM05D006254 ORTHO05D007409 7.6e-139 498.0 473 51.6
Eucgr.I00013 Eucalyptus grandis HOM05D006254 ORTHO05D007409 1.0e-138 497.7 474 51.5
MELO3C033099.2 Cucumis melo HOM05D006254 ORTHO05D007409 3.8e-138 495.7 472 53.0
PSO017G1045 Papaver somniferum HOM05D006254 ORTHO05D007409 8.4e-138 494.6 469 52.9
CANSAT54G2690 Cannabis sativa HOM05D006254 ORTHO05D007409 1.4e-137 493.8 463 50.8
Ca_17588_v3 Cicer arietinum L. HOM05D006254 ORTHO05D007409 1.4e-137 493.8 474 51.3
FAN21G3787 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.5e-137 493.0 488 50.0
THA.LOC104803663 Tarenaya hassleriana HOM05D006254 ORTHO05D007409 3.2e-137 492.7 470 50.6
FAN25G1911 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.2e-137 492.3 488 50.4
TPR.G12754 Trifolium pratense HOM05D006254 ORTHO05D007409 4.2e-137 492.3 464 51.5
EL10Ac4g08984 Beta vulgaris HOM05D006254 ORTHO05D007409 5.5e-137 491.9 494 49.8
Peaxi162Scf00030g00012 Petunia axillaris HOM05D006254 ORTHO05D007409 7.1e-137 491.5 448 53.3
Gohir.A05G375400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 2.7e-136 489.6 464 49.4
CsaV3_4G030320 Cucumis sativus L. HOM05D006254 ORTHO05D007409 7.9e-136 488.0 472 52.1
Oeu011007.1 Olea europaea HOM05D006254 ORTHO05D007409 1.0e-135 487.6 474 50.6
HanXRQChr01g0017761 Helianthus annuus HOM05D006254 ORTHO05D007409 1.1e-134 484.2 476 51.3
Sopen03g020950 Solanum pennellii HOM05D006254 ORTHO05D007409 1.1e-134 484.2 474 50.8
Gorai.012G045500 Gossypium raimondii HOM05D006254 ORTHO05D007409 1.5e-134 483.8 464 49.1
MSTRG.23507 Avicennia marina HOM05D006254 ORTHO05D007409 1.9e-134 483.4 461 49.9
TWI31G0260 Tripterygium wilfordii HOM05D006254 ORTHO05D007409 3.3e-134 482.6 453 51.4
FAN11G0663 Fragaria x ananassa HOM05D006254 ORTHO05D007409 4.3e-134 482.3 481 50.1
arahy.Tifrunner.gnm1.ann1.9169VS Arachis hypogaea HOM05D006254 ORTHO05D007409 1.3e-133 480.7 464 51.7
Migut.H00776 Erythranthe guttata HOM05D006254 ORTHO05D007409 1.3e-133 480.7 473 49.5
BcaB02g09340 Brassica carinata HOM05D006254 ORTHO05D007409 1.6e-133 480.3 475 48.8
arahy.Tifrunner.gnm1.ann1.ZNEY68 Arachis hypogaea HOM05D006254 ORTHO05D007409 2.8e-133 479.6 464 51.7
CARHR037200 Cardamine hirsuta HOM05D006254 ORTHO05D007409 2.8e-133 479.6 469 49.9
BcaB02g09339 Brassica carinata HOM05D006254 ORTHO05D007409 4.8e-133 478.8 475 48.6
AT1G47570 Arabidopsis thaliana HOM05D006254 ORTHO05D007409 6.2e-133 478.4 471 49.9
Sp4g18960 Schrenkiella parvula HOM05D006254 ORTHO05D007409 2.4e-132 476.5 467 49.0
Carub.0001s3633 Capsella rubella HOM05D006254 ORTHO05D007409 5.3e-132 475.3 471 49.5
Solyc03g078230.3 Solanum lycopersicum HOM05D006254 ORTHO05D007409 5.3e-132 475.3 474 50.0
Medtr8g095410 Medicago truncatula HOM05D006254 ORTHO05D007409 6.9e-132 474.9 474 49.2
BcaC02g11789 Brassica carinata HOM05D006254 ORTHO05D007409 1.2e-131 474.2 474 48.9
C04p11350 Brassica napus HOM05D006254 ORTHO05D007409 1.2e-131 474.2 474 48.9
Aqoxy5G02669 Aquilegia oxysepala HOM05D006254 ORTHO05D007409 1.5e-131 473.8 474 48.5
A05p09180 Brassica napus HOM05D006254 ORTHO05D007409 6.5e-130 468.4 496 47.0
BolC4t22773H Brassica oleracea HOM05D006254 ORTHO05D007409 1.1e-129 467.6 480 48.3
Lsat_1_v5_gn_1_78401 Lactuca sativa HOM05D006254 ORTHO05D007409 1.1e-129 467.6 411 54.7
VMungo0251G0787 Vigna mungo HOM05D006254 ORTHO05D007409 1.1e-129 467.6 487 47.0
Thhalv10016597m.g Eutrema salsugineum HOM05D006254 ORTHO05D007409 1.4e-129 467.2 449 51.0
BraA05t19873Z Brassica rapa HOM05D006254 ORTHO05D007409 4.2e-129 465.7 503 46.5
Cc07_g20930 Coffea canephora HOM05D006254 ORTHO05D007409 1.6e-128 463.8 513 47.2
BolC4t22794H Brassica oleracea HOM05D006254 ORTHO05D007409 2.1e-128 463.4 503 46.5
RcHm_v2.0_Chr5g0068971 Rosa chinensis HOM05D006254 ORTHO05D007409 7.9e-128 461.5 487 48.5
CSS0012450 Camellia sinensis var. sinensis HOM05D006254 ORTHO05D007409 1.1e-126 457.6 348 59.5
Gohir.D04G040400 Gossypium hirsutum HOM05D006254 ORTHO05D007409 8.2e-125 451.4 464 47.2
Manes.12G085200 Manihot esculenta HOM05D006254 ORTHO05D007409 1.4e-124 450.7 351 57.5
DCAR_009615 Daucus carota HOM05D006254 ORTHO05D007409 1.1e-121 441.0 431 50.8
Psat7g040840 Pisum sativum HOM05D006254 ORTHO05D007409 1.8e-119 433.7 397 51.4
FAN16G1494 Fragaria x ananassa HOM05D006254 ORTHO05D007409 2.5e-118 429.9 460 47.6
Rhsim09G0131600 Rhododendron simsii HOM05D006254 ORTHO05D007409 1.7e-117 427.2 348 56.3
AUR62036036 Chenopodium quinoa HOM05D006254 ORTHO05D007409 1.9e-113 413.7 544 41.4
Phvul.002G279100 Phaseolus vulgaris HOM05D006254 ORTHO05D007409 1.0e-111 407.9 437 46.7
Migut.H00777 Erythranthe guttata HOM05D006254 ORTHO05D007409 2.0e-110 403.7 402 49.8
AL1G53850 Arabidopsis lyrata HOM05D006254 ORTHO05D007409 8.2e-109 398.3 353 51.6
Ah.04g163200 Amaranthus hybridus HOM05D006254 ORTHO05D007409 2.4e-108 396.7 461 45.6
HanXRQChr01g0017751 Helianthus annuus HOM05D006254 ORTHO05D007409 3.5e-107 392.9 447 46.5
CDE06G2483 Ceratophyllum demersum HOM05D006254 ORTHO05D007409 7.7e-107 391.7 412 49.5
Ciclev10024761m.g Citrus clementina HOM05D003183 ORTHO05D003697 7.7e-107 391.7 388 50.0
HPP92_016136 Vanilla planifolia HOM05D006254 ORTHO05D007409 1.0e-106 391.3 467 45.4
Sed0010974 Sechium edule HOM05D006254 ORTHO05D007409 1.5e-105 387.5 391 51.4
Nitab4.5_0012738g0010 Nicotiana tabacum HOM05D006254 ORTHO05D007409 5.5e-105 385.6 578 39.1
SGA_v2.0_scaffold54G19570 Striga asiatica HOM05D006254 ORTHO05D007409 1.4e-103 380.9 516 39.9
Thecc.01G235200 Theobroma cacao HOM05D006254 ORTHO05D007409 8.8e-103 378.3 420 45.7
Glyma.05G198100 Glycine max HOM05D006254 ORTHO05D007409 9.7e-102 374.8 408 46.6
RcHm_v2.0_Chr2g0157071 Rosa chinensis HOM05D006254 ORTHO05D007409 7.7e-99 365.2 389 48.1
Sabra04G0089300 Salix brachista HOM05D006254 ORTHO05D007409 3.7e-93 346.3 565 37.7
Atru.chr4.972 Acer truncatum HOM05D006254 ORTHO05D007409 3.1e-92 343.2 356 48.9
MD11G1077300 Malus domestica HOM05D006254 ORTHO05D007409 6.5e-90 335.5 368 46.5
MD11G1078600 Malus domestica HOM05D006254 ORTHO05D007409 6.6e-82 308.9 416 40.6
vmacro10394 Vaccinium macrocarpon HOM05D006254 ORTHO05D007409 1.6e-75 287.7 289 47.4
Nitab4.5_0000004g0230 Nicotiana tabacum HOM05D006254 ORTHO05D007409 8.6e-74 282.0 475 37.5
AUR62004819 Chenopodium quinoa HOM05D006254 ORTHO05D007409 3.3e-73 280.0 422 40.8
Aa31LG5G9250 Aethionema arabicum HOM05D006254 ORTHO05D007409 7.3e-73 278.9 255 48.6
Hma1.2p1_0057F.1_g032170 Hydrangea macrophylla HOM05D006254 ORTHO05D007409 1.2e-72 278.1 196 58.2
Actinidia34771 Actinidia chinensis HOM05D000969 ORTHO05D000899 2.3e-71 273.9 216 57.4
Hund06901 Selenicereus undatus HOM05D006254 ORTHO05D007409 2.2e-69 267.3 257 49.4
MD00G1120300 Malus domestica HOM05D006254 ORTHO05D007409 3.5e-67 260.0 254 44.9
Mapoly0003s0196 Marchantia polymorpha HOM05D006254 ORTHO05D007409 5.6e-65 252.7 501 32.7
Haze_25433 Corylus avellana HOM05D006254 ORTHO05D007409 3.1e-63 246.9 243 52.7
unitig_65.g29879 Utricularia gibba HOM05D006254 ORTHO05D007409 4.4e-62 243.0 452 34.5
Cpa.g.sc138.23 Carica papaya HOM05D006254 ORTHO05D007409 2.3e-55 220.7 167 55.1
AagrBONN_evm.TU.Sc2ySwM_117.2849 Anthoceros agrestis HOM05D006254 ORTHO05D007409 5.2e-55 219.5 419 32.2
MD11G1077500 Malus domestica HOM05D006254 ORTHO05D007409 1.5e-54 218.0 291 40.9
unitig_62.g23450 Utricularia gibba HOM05D006254 ORTHO05D007409 2.0e-54 217.6 493 32.0
Haze_25436 Corylus avellana HOM05D006254 ORTHO05D007409 2.6e-54 217.2 212 53.3
MD00G1120800 Malus domestica HOM05D006254 ORTHO05D007409 1.2e-48 198.4 164 51.8
MD11G1078400 Malus domestica HOM05D006254 ORTHO05D007409 1.1e-47 195.3 164 51.2
Lj4g0022315 Lotus japonicus HOM05D006254 ORTHO05D007409 3.4e-46 190.3 228 46.9
Migut.H00787 Erythranthe guttata HOM05D006254 ORTHO05D007409 9.6e-41 172.2 224 44.2
AagrBONN_evm.TU.Sc2ySwM_228.4097 Anthoceros agrestis HOM05D006254 ORTHO05D007409 2.8e-40 170.6 308 32.8
SEGI_09568 Sequoiadendron giganteum HOM05D006254 ORTHO05D007409 1.5e-38 164.9 240 38.3
ATR0584G026 Amborella trichopoda HOM05D006254 ORTHO05D007409 3.4e-38 163.7 175 45.1
CBR_g38543 Chara braunii HOM05D006254 ORTHO05D007409 6.2e-32 142.9 406 26.4
Haze_25431 Corylus avellana HOM05D006254 ORTHO05D007409 7.6e-30 136.0 176 40.9
Haze_25432 Corylus avellana HOM05D006254 ORTHO05D007409 7.6e-30 136.0 176 40.9
Os08g0123300 Oryza sativa ssp. japonica HOM05D006254 ORTHO05D007409 1.3e-29 135.2 99 68.7
Duzib264G1273 Durio zibethinus HOM05D006254 ORTHO05D007409 1.1e-25 122.1 78 61.5
RcHm_v2.0_Chr2g0157061 Rosa chinensis HOM05D006254 ORTHO05D007409 1.5e-25 121.7 89 59.6
BolC4t22792H Brassica oleracea HOM05D006254 ORTHO05D007409 6.9e-23 112.8 144 45.1
Nn1g08418 Nelumbo nucifera HOM05D006254 ORTHO05D007409 7.6e-22 109.4 86 57.0
GSVIVG01038034001 Vitis vinifera HOM05D001605 ORTHO05D007409 8.4e-21 105.9 79 57.0
Actinidia38917 Actinidia chinensis HOM05D006254 ORTHO05D007409 7.1e-20 102.8 118 43.2
MD11G1077800 Malus domestica HOM05D006254 ORTHO05D007409 7.9e-19 99.4 68 55.9
MD11G1077000 Malus domestica HOM05D006254 ORTHO05D007409 3.7e-16 90.5 107 40.2
AagrBONN_evm.TU.Sc2ySwM_340.558 Anthoceros agrestis HOM05D002405 ORTHO05D002483 5.3e-15 86.7 226 28.3
AagrBONN_evm.TU.Sc2ySwM_228.4094 Anthoceros agrestis HOM05D006254 ORTHO05D007409 1.3e-13 82.0 267 26.2
arahy.Tifrunner.gnm1.ann1.SX6F5A Arachis hypogaea HOM05D006254 ORTHO05D007409 3.6e-11 73.9 83 44.6
HanXRQChr02g0035161 Helianthus annuus HOM05D006254 ORTHO05D007409 2.5e-09 67.8 111 36.0
ClCG04G002460 Citrullus lanatus HOM05D006254 ORTHO05D007409 3.3e-09 67.4 113 40.7
Glyma.08G005450 Glycine max HOM05D006254 ORTHO05D007409 9.7e-09 65.9 108 38.0
Actinidia38918 Actinidia chinensis HOM05D006254 ORTHO05D007409 4.8e-08 63.5 42 59.5
PSO170G1462 Papaver somniferum HOM05D006254 ORTHO05D007409 5.3e-07 60.1 102 41.2


User provided reference genes

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