Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb200650 Zea mays HOM05D003827 ORTHO05D004518 0.0e+00 1268.1 668 100.0
Os11g0587300 Oryza sativa ssp. japonica HOM05D003827 ORTHO05D004518 3.7e-163 579.3 721 56.3
TAR362G1025 Trochodendron aralioides HOM05D003827 ORTHO05D004518 1.2e-57 228.8 794 34.1
Nn1g02509 Nelumbo nucifera HOM05D003827 ORTHO05D004518 8.0e-57 226.1 770 34.7
Prupe.8G233400 Prunus persica HOM05D003827 ORTHO05D004518 1.8e-56 224.9 750 35.1
MBI04_g36520_MAGBIO Magnolia biondii HOM05D003827 ORTHO05D004518 4.0e-56 223.8 744 34.3
Cfa006213 Carpinus fangiana HOM05D003827 ORTHO05D004518 9.8e-55 219.2 766 32.5
CsaV3_2G013800 Cucumis sativus L. HOM05D003827 ORTHO05D004518 1.7e-54 218.4 744 33.2
RcHm_v2.0_Chr6g0289731 Rosa chinensis HOM05D003827 ORTHO05D004518 2.2e-54 218.0 714 34.2
CANSAT25G1147 Cannabis sativa HOM05D003827 ORTHO05D004518 4.9e-54 216.9 740 33.8
FAN24G2611 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.1e-53 215.7 753 33.9
COL.COLO4_06099 Corchorus olitorius HOM05D003827 ORTHO05D004518 1.8e-53 214.9 753 32.3
MD03G1256300 Malus domestica HOM05D003827 ORTHO05D004518 1.6e-52 211.8 745 33.0
Dinv22492 Davidia involucrata HOM05D003827 ORTHO05D004518 2.0e-52 211.5 765 32.3
Haze_04629 Corylus avellana HOM05D003827 ORTHO05D004518 3.5e-52 210.7 775 32.4
Aqoxy2G03489 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 7.8e-52 209.5 733 32.9
FAN15G1200 Fragaria x ananassa HOM05D003827 ORTHO05D004518 7.8e-52 209.5 755 33.1
Sabra05G0165800 Salix brachista HOM05D003827 ORTHO05D004518 1.0e-51 209.1 770 33.0
Sed0018560 Sechium edule HOM05D003827 ORTHO05D004518 1.3e-51 208.8 764 32.6
Thecc.01G269500 Theobroma cacao HOM05D003827 ORTHO05D004518 5.0e-51 206.8 766 31.7
Duzib138G1561 Durio zibethinus HOM05D003827 ORTHO05D004518 6.6e-51 206.5 760 32.6
MELO3C014319.2 Cucumis melo HOM05D003827 ORTHO05D004518 8.6e-51 206.1 768 32.2
FAN27G1464 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.5e-50 205.3 717 34.0
Potri.002G046700 Populus trichocarpa HOM05D003827 ORTHO05D004518 1.5e-50 205.3 760 31.8
Sc05g0001120 Simmondsia chinensis HOM05D003827 ORTHO05D004518 3.3e-50 204.1 709 32.6
CiPaw.07G086100 Carya illinoinensis HOM05D003827 ORTHO05D004518 5.6e-50 203.4 779 32.1
Potri.005G216300 Populus trichocarpa HOM05D003827 ORTHO05D004518 5.6e-50 203.4 763 31.6
Nitab4.5_0010556g0020 Nicotiana tabacum HOM05D003827 ORTHO05D004518 9.5e-50 202.6 761 31.4
Cc00_g27210 Coffea canephora HOM05D003827 ORTHO05D004518 2.1e-49 201.4 777 32.2
MD11G1277100 Malus domestica HOM05D003827 ORTHO05D004518 2.1e-49 201.4 717 32.4
Duzib133G0640 Durio zibethinus HOM05D003827 ORTHO05D004518 2.8e-49 201.1 758 31.3
arahy.Tifrunner.gnm1.ann1.735JS3 Arachis hypogaea HOM05D003827 ORTHO05D004518 4.7e-49 200.3 747 31.2
Manes.01G203100 Manihot esculenta HOM05D003827 ORTHO05D004518 8.0e-49 199.5 737 31.6
Gohir.D11G131801 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-48 198.7 754 32.6
Ah.02g111340 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.8e-48 198.4 694 32.4
CSS0001059 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 3.1e-48 197.6 749 31.4
Actinidia19972 Actinidia chinensis HOM05D003827 ORTHO05D004518 5.2e-48 196.8 714 32.8
Cpa.g.c31397 Carica papaya HOM05D003827 ORTHO05D004518 6.8e-48 196.4 765 31.5
Oeu058798.1 Olea europaea HOM05D003827 ORTHO05D004518 6.8e-48 196.4 736 31.5
vmacro02620 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 6.8e-48 196.4 747 33.7
Gohir.A11G126200 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.5e-47 195.3 754 32.4
Nitab4.5_0000617g0200 Nicotiana tabacum HOM05D003827 ORTHO05D004518 1.5e-47 195.3 761 30.7
ClCG07G000540 Citrullus lanatus HOM05D003827 ORTHO05D004518 2.0e-47 194.9 765 31.9
Aqoxy5G00378 Aquilegia oxysepala HOM05D003827 ORTHO05D004518 2.6e-47 194.5 753 31.9
Gorai.007G140900 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.4e-47 194.1 758 32.2
QL12p042499 Quercus lobata HOM05D003827 ORTHO05D004518 3.4e-47 194.1 716 32.4
arahy.Tifrunner.gnm1.ann1.900HG3 Arachis hypogaea HOM05D003827 ORTHO05D004518 4.4e-47 193.7 747 30.8
Gohir.A07G207900 Gossypium hirsutum HOM05D003827 ORTHO05D004518 5.8e-47 193.4 741 30.9
Eucgr.B01477 Eucalyptus grandis HOM05D003827 ORTHO05D004518 9.8e-47 192.6 763 32.0
Ciclev10018911m.g Citrus clementina HOM05D003827 ORTHO05D004518 1.3e-46 192.2 775 32.1
Sabra02G0037600 Salix brachista HOM05D003827 ORTHO05D004518 1.3e-46 192.2 820 30.6
Glyma.02G143400 Glycine max HOM05D003827 ORTHO05D004518 1.7e-46 191.8 721 32.7
VMungo0720G1763 Vigna mungo HOM05D003827 ORTHO05D004518 1.7e-46 191.8 710 33.9
Lj1A56T63 Lonicera japonica HOM05D003827 ORTHO05D004518 2.9e-46 191.0 746 31.5
SalBow6G3195 Salvia bowleyana HOM05D003827 ORTHO05D004518 6.4e-46 189.9 738 31.4
MSTRG.12545 Avicennia marina HOM05D003827 ORTHO05D004518 1.1e-45 189.1 759 30.8
PSO832G0360 Papaver somniferum HOM05D003827 ORTHO05D004518 1.4e-45 188.7 803 30.1
Glyma.10G031000 Glycine max HOM05D003827 ORTHO05D004518 4.1e-45 187.2 723 32.0
Migut.N02178 Erythranthe guttata HOM05D003827 ORTHO05D004518 1.2e-44 185.7 740 30.0
Phvul.007G175800 Phaseolus vulgaris HOM05D003827 ORTHO05D004518 1.2e-44 185.7 705 33.3
Manes.05G082700 Manihot esculenta HOM05D003827 ORTHO05D004518 2.0e-44 184.9 756 30.8
PSO210G6408 Papaver somniferum HOM05D003827 ORTHO05D004518 2.7e-44 184.5 802 30.4
MSTRG.21519 Avicennia marina HOM05D003827 ORTHO05D004518 6.0e-44 183.3 770 30.9
CDE07G1346 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 6.0e-44 183.3 724 30.7
Atru.chr5.1540 Acer truncatum HOM05D003827 ORTHO05D004518 1.0e-43 182.6 759 32.1
SalBow4G1898 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.0e-43 182.6 741 31.6
Solyc07g008670.3 Solanum lycopersicum HOM05D003827 ORTHO05D004518 1.0e-43 182.6 775 29.8
Sopen07g004600 Solanum pennellii HOM05D003827 ORTHO05D004518 1.0e-43 182.6 775 29.8
SalBow4G1883 Salvia bowleyana HOM05D003827 ORTHO05D004518 1.3e-43 182.2 741 31.6
EL10Ac5g10483 Beta vulgaris HOM05D003827 ORTHO05D004518 1.7e-43 181.8 722 31.6
FAN20G2722 Fragaria x ananassa HOM05D003827 ORTHO05D004518 1.7e-43 181.8 753 31.9
Peaxi162Scf01038g00148 Petunia axillaris HOM05D003827 ORTHO05D004518 1.7e-43 181.8 770 31.2
PGR119G2143 Punica granatum HOM05D003827 ORTHO05D004518 2.3e-43 181.4 744 31.3
SGA_v2.0_scaffold81G26054 Striga asiatica HOM05D003827 ORTHO05D004518 6.6e-43 179.9 747 31.2
AUR62011961 Chenopodium quinoa HOM05D003827 ORTHO05D004518 8.6e-43 179.5 677 31.0
PGSC0003DMG400022986 Solanum tuberosum HOM05D003827 ORTHO05D004518 1.9e-42 178.3 747 31.3
Hund02868 Selenicereus undatus HOM05D003827 ORTHO05D004518 2.5e-42 177.9 707 33.0
Ca_09721_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 2.8e-41 174.5 748 31.4
AUR62032274 Chenopodium quinoa HOM05D003827 ORTHO05D004518 1.1e-40 172.6 648 30.4
Lj1g0025199 Lotus japonicus HOM05D003827 ORTHO05D004518 2.3e-40 171.4 723 30.3
DCAR_005854 Daucus carota HOM05D003827 ORTHO05D004518 3.1e-40 171.0 680 30.3
HanXRQChr01g0006931 Helianthus annuus HOM05D003827 ORTHO05D004518 6.8e-40 169.9 750 30.0
Migut.D00347 Erythranthe guttata HOM05D003827 ORTHO05D004518 8.9e-40 169.5 765 30.5
Medtr1g071070 Medicago truncatula HOM05D003827 ORTHO05D004518 2.6e-39 167.9 736 31.1
Rhsim13G0030000 Rhododendron simsii HOM05D003827 ORTHO05D004518 2.6e-39 167.9 660 31.1
Duzib211G0278 Durio zibethinus HOM05D003827 ORTHO05D004518 4.4e-39 167.2 772 28.5
GSVIVG01003137001 Vitis vinifera HOM05D003827 ORTHO05D004518 4.4e-39 167.2 664 33.0
Actinidia21149 Actinidia chinensis HOM05D003827 ORTHO05D004518 7.5e-39 166.4 729 30.5
Lj5g0023922 Lotus japonicus HOM05D003827 ORTHO05D004518 1.7e-38 165.2 737 32.2
Gohir.A08G062500 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.9e-38 164.5 691 29.7
Ca_08637_v3 Cicer arietinum L. HOM05D003827 ORTHO05D004518 1.4e-37 162.2 696 30.3
Gorai.004G075700 Gossypium raimondii HOM05D003827 ORTHO05D004518 2.4e-37 161.4 722 30.1
DCAR_002692 Daucus carota HOM05D003827 ORTHO05D004518 5.4e-37 160.2 727 29.6
DCAR_012508 Daucus carota HOM05D003827 ORTHO05D004518 7.1e-37 159.8 746 29.8
Lsat_1_v5_gn_5_184780 Lactuca sativa HOM05D003827 ORTHO05D004518 7.1e-37 159.8 771 29.6
Gohir.D08G071700 Gossypium hirsutum HOM05D003827 ORTHO05D004518 2.1e-36 158.3 690 30.1
HPP92_024347 Vanilla planifolia HOM05D003827 ORTHO05D004518 2.7e-36 157.9 697 31.9
FvH4_2g22810 Fragaria vesca HOM05D003827 ORTHO05D004518 4.6e-36 157.1 543 35.9
CDE06G2016 Ceratophyllum demersum HOM05D003827 ORTHO05D004518 7.8e-36 156.4 716 29.6
Dinv34555 Davidia involucrata HOM05D003827 ORTHO05D004518 1.7e-35 155.2 544 32.9
Rhsim01G0271400 Rhododendron simsii HOM05D003827 ORTHO05D004518 1.7e-35 155.2 763 29.6
HPP92_020343 Vanilla planifolia HOM05D003827 ORTHO05D004518 8.6e-35 152.9 620 32.7
Psat3g061520 Pisum sativum HOM05D003827 ORTHO05D004518 5.6e-34 150.2 694 28.4
THA.LOC104817570 Tarenaya hassleriana HOM05D003827 ORTHO05D004518 7.3e-34 149.8 692 30.8
vmacro14883 Vaccinium macrocarpon HOM05D003827 ORTHO05D004518 2.3e-32 144.8 761 28.6
Medtr7g095890 Medicago truncatula HOM05D003827 ORTHO05D004518 8.9e-32 142.9 701 28.8
Sp5g00120 Schrenkiella parvula HOM05D003827 ORTHO05D004518 1.5e-31 142.1 654 29.5
CSS0010046 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 2.6e-31 141.4 521 32.4
Actinidia24929 Actinidia chinensis HOM05D003827 ORTHO05D004518 3.4e-31 141.0 701 29.1
HanXRQChr06g0177881 Helianthus annuus HOM05D003827 ORTHO05D004518 4.4e-31 140.6 707 29.1
CARHR291540 Cardamine hirsuta HOM05D003827 ORTHO05D004518 9.9e-31 139.4 642 30.2
arahy.Tifrunner.gnm1.ann1.S69P4W Arachis hypogaea HOM05D003827 ORTHO05D004518 2.2e-30 138.3 729 28.9
AL5G46290 Arabidopsis lyrata HOM05D003827 ORTHO05D004518 3.7e-30 137.5 677 30.4
MSTRG.17468 Avicennia marina HOM05D003827 ORTHO05D004518 4.9e-30 137.1 755 28.2
AT3G63430 Arabidopsis thaliana HOM05D003827 ORTHO05D004518 4.1e-29 134.0 632 28.8
Psat6g058320 Pisum sativum HOM05D003827 ORTHO05D004518 4.1e-29 134.0 731 29.1
TAR633G1445 Trochodendron aralioides HOM05D003827 ORTHO05D004518 5.4e-29 133.7 480 34.4
ECA248G3364 Erigeron canadensis HOM05D003827 ORTHO05D004518 9.2e-29 132.9 747 28.5
TPR.G19092 Trifolium pratense HOM05D003827 ORTHO05D004518 1.2e-28 132.5 694 28.4
MSTRG.18275 Avicennia marina HOM05D003827 ORTHO05D004518 1.3e-27 129.0 775 26.7
arahy.Tifrunner.gnm1.ann1.X14VTN Arachis hypogaea HOM05D003827 ORTHO05D004518 3.0e-27 127.9 767 28.4
Aa31LG10G17280 Aethionema arabicum HOM05D003827 ORTHO05D004518 3.9e-27 127.5 727 28.5
Gorai.001G241900 Gossypium raimondii HOM05D003827 ORTHO05D004518 3.9e-27 127.5 550 29.3
C08p38040 Brassica napus HOM05D003827 ORTHO05D004518 8.6e-27 126.3 639 29.4
BcaC07g40810 Brassica carinata HOM05D003827 ORTHO05D004518 1.1e-26 125.9 635 29.3
Nn3g19462 Nelumbo nucifera HOM05D003827 ORTHO05D004518 7.3e-26 123.2 487 33.5
BolC8t51378H Brassica oleracea HOM05D003827 ORTHO05D004518 2.1e-25 121.7 640 29.2
ATR0665G375 Amborella trichopoda HOM05D003827 ORTHO05D004518 2.8e-25 121.3 523 32.1
BraA09t40917Z Brassica rapa HOM05D003827 ORTHO05D004518 1.4e-24 119.0 639 30.2
A09p55100 Brassica napus HOM05D003827 ORTHO05D004518 6.8e-24 116.7 630 29.7
Oeu011513.1 Olea europaea HOM05D003827 ORTHO05D004518 5.8e-23 113.6 298 37.2
Ah.11g050100 Amaranthus hybridus HOM05D003827 ORTHO05D004518 1.1e-21 109.4 267 33.0
BcaC07g42691 Brassica carinata HOM05D003827 ORTHO05D004518 9.3e-21 106.3 631 27.3
Carub.0005s3005 Capsella rubella HOM05D003827 ORTHO05D004518 3.5e-20 104.4 666 27.0
SHI10022 Sapria himalayana HOM05D003827 ORTHO05D004518 6.6e-19 100.1 639 28.0
Thhalv10005863m.g Eutrema salsugineum HOM05D003827 ORTHO05D004518 2.4e-16 91.7 649 28.8
TPR.G39105 Trifolium pratense HOM05D003827 ORTHO05D004518 5.3e-16 90.5 275 33.1
TPR.G39068 Trifolium pratense HOM05D003827 ORTHO05D000002 2.6e-15 88.2 370 31.4
Lsat_1_v5_gn_9_7940 Lactuca sativa HOM05D003827 ORTHO05D004518 5.8e-15 87.0 777 24.8
Lalb_Chr06g0162731 Lupinus albus HOM05D003827 ORTHO05D004518 1.7e-14 85.5 679 26.2
Gohir.D07G213901 Gossypium hirsutum HOM05D003827 ORTHO05D004518 1.4e-13 82.4 450 27.1
HanXRQChr15g0466901 Helianthus annuus HOM05D003827 ORTHO05D004518 9.3e-13 79.7 663 24.9
ECA247G1386 Erigeron canadensis HOM05D003827 ORTHO05D004518 4.6e-12 77.4 680 25.3
Lalb_Chr01g0019961 Lupinus albus HOM05D003827 ORTHO05D004518 1.3e-11 75.9 590 24.1
Oeu002272.1 Olea europaea HOM05D003827 ORTHO05D004518 3.9e-11 74.3 313 31.0
CSS0036794 Camellia sinensis var. sinensis HOM05D003827 ORTHO05D004518 1.1e-08 66.2 195 28.2
Nn5g28224 Nelumbo nucifera HOM05D003827 ORTHO05D004518 3.1e-08 64.7 163 39.3
Nn1g00777 Nelumbo nucifera HOM05D003827 ORTHO05D004518 1.2e-07 62.8 194 34.5
Manes.14G086600 Manihot esculenta HOM05D001693 ORTHO05D001588 2.6e-07 61.6 232 28.4
TAR622G1027 Trochodendron aralioides HOM05D001693 ORTHO05D001588 2.6e-07 61.6 220 31.4
SGA_v2.0_scaffold214G42261 Striga asiatica HOM05D003827 ORTHO05D004518 4.5e-07 60.8 51 70.6
Nitab4.5_0001485g0020 Nicotiana tabacum HOM05D001693 ORTHO05D001588 5.8e-07 60.5 217 29.0
Nitab4.5_0007160g0020 Nicotiana tabacum HOM05D001693 ORTHO05D001588 9.9e-07 59.7 218 28.9
Potri.012G061900 Populus trichocarpa HOM05D001693 ORTHO05D001588 2.9e-06 58.2 227 28.2
Potri.015G058900 Populus trichocarpa HOM05D001693 ORTHO05D001588 4.9e-06 57.4 242 26.4
HanXRQChr10g0282171 Helianthus annuus HOM05D003827 ORTHO05D004518 6.4e-06 57.0 417 29.3
Lalb_Chr12g0197281 Lupinus albus HOM05D001693 ORTHO05D001588 6.4e-06 57.0 258 29.8
TAR629G1877 Trochodendron aralioides HOM05D001693 ORTHO05D001588 6.4e-06 57.0 224 28.6
SGA_v2.0_scaffold76G25113 Striga asiatica HOM05D003827 ORTHO05D004518 8.4e-06 56.6 46 71.7
TAR633G0743 Trochodendron aralioides HOM05D003827 ORTHO05D004518 8.4e-06 56.6 222 26.6


User provided reference genes

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