Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb200300 Zea mays HOM05D003229 ORTHO05D003835 9.7e-220 766.9 516 100.0
Zm00001eb114310 Zea mays HOM05D003229 ORTHO05D003835 2.0e-127 460.3 534 70.8
Zm00001eb187740 Zea mays HOM05D003229 ORTHO05D003835 3.8e-54 216.9 160 83.1
Os11g0573200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 3.4e-39 167.2 244 58.2
GSVIVG01037516001 Vitis vinifera HOM05D003229 ORTHO05D003835 3.5e-36 157.1 358 38.3
PSO384G4356 Papaver somniferum HOM05D003229 ORTHO05D003835 6.2e-33 146.4 290 44.5
Lalb_Chr17g0347381 Lupinus albus HOM05D003229 ORTHO05D003835 1.1e-32 145.6 447 38.5
Ciclev10028298m.g Citrus clementina HOM05D003229 ORTHO05D003835 4.0e-32 143.7 345 32.5
Os11g0575200 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 9.0e-32 142.5 85 74.1
TWI31G0893 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 9.0e-32 142.5 440 36.4
RcHm_v2.0_Chr6g0255381 Rosa chinensis HOM05D003229 ORTHO05D003835 2.6e-31 141.0 401 46.4
Thecc.05G214900 Theobroma cacao HOM05D003229 ORTHO05D003835 2.6e-31 141.0 492 38.4
Atru.chr3.3041 Acer truncatum HOM05D003229 ORTHO05D003835 7.6e-31 139.4 321 40.2
Sc21g0006640 Simmondsia chinensis HOM05D003229 ORTHO05D003835 3.8e-30 137.1 486 34.4
Nn2g14458 Nelumbo nucifera HOM05D003229 ORTHO05D003835 8.4e-30 136.0 457 39.8
PSO339G4047 Papaver somniferum HOM05D003229 ORTHO05D003835 1.1e-29 135.6 352 38.1
MD03G1161300 Malus domestica HOM05D003229 ORTHO05D003835 1.4e-29 135.2 433 42.0
Cpa.g.sc103.35 Carica papaya HOM05D003229 ORTHO05D003835 4.2e-29 133.7 417 37.6
HanXRQChr05g0137001 Helianthus annuus HOM05D003229 ORTHO05D003835 1.2e-28 132.1 323 43.7
Phvul.006G006900 Phaseolus vulgaris HOM05D003229 ORTHO05D003835 4.6e-28 130.2 375 38.9
arahy.Tifrunner.gnm1.ann1.B3GIUW Arachis hypogaea HOM05D003229 ORTHO05D003835 6.0e-28 129.8 456 36.6
FvH4_2g05241 Fragaria vesca HOM05D003229 ORTHO05D003835 7.9e-28 129.4 430 44.7
FAN27G0679 Fragaria x ananassa HOM05D003229 ORTHO05D003835 7.9e-28 129.4 392 46.2
QL01p018824 Quercus lobata HOM05D003229 ORTHO05D003835 7.9e-28 129.4 551 35.4
Glyma.20G055200 Glycine max HOM05D003229 ORTHO05D003835 1.0e-27 129.0 369 42.3
FAN24G0320 Fragaria x ananassa HOM05D003229 ORTHO05D003835 1.8e-27 128.3 430 44.4
Gohir.A13G086615 Gossypium hirsutum HOM05D003229 ORTHO05D003835 1.8e-27 128.3 470 36.0
TWI79G1121 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 2.3e-27 127.9 458 34.1
Oeu058180.2 Olea europaea HOM05D003229 ORTHO05D003835 3.9e-27 127.1 421 39.2
Manes.11G104500 Manihot esculenta HOM05D003229 ORTHO05D003835 5.1e-27 126.7 423 41.6
Dinv32144 Davidia involucrata HOM05D003229 ORTHO05D003835 8.7e-27 125.9 172 52.9
Cc01_g08150 Coffea canephora HOM05D003229 ORTHO05D003835 1.1e-26 125.6 427 39.6
Hma1.2p1_0218F.1_g092270 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 1.1e-26 125.6 476 33.2
Cfa010230 Carpinus fangiana HOM05D003229 ORTHO05D003835 1.5e-26 125.2 279 40.5
CiPaw.13G105300 Carya illinoinensis HOM05D003229 ORTHO05D003835 1.9e-26 124.8 252 40.5
Actinidia12901 Actinidia chinensis HOM05D003229 ORTHO05D003835 2.5e-26 124.4 306 36.9
TAR636G2352 Trochodendron aralioides HOM05D003229 ORTHO05D003835 4.3e-26 123.6 525 34.5
Haze_23616 Corylus avellana HOM05D003229 ORTHO05D003835 5.7e-26 123.2 279 40.1
HPP92_026334 Vanilla planifolia HOM05D003229 ORTHO05D003835 9.6e-26 122.5 471 44.4
VMungo0540G0117 Vigna mungo HOM05D003229 ORTHO05D003835 9.6e-26 122.5 406 36.9
PGSC0003DMG400002995 Solanum tuberosum HOM05D003229 ORTHO05D003835 1.3e-25 122.1 323 38.4
Eucgr.J00598 Eucalyptus grandis HOM05D003229 ORTHO05D003835 2.1e-25 121.3 326 39.6
ECA238G1805 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.8e-25 120.9 286 47.6
Solyc11g071690.3 Solanum lycopersicum HOM05D003229 ORTHO05D003835 2.8e-25 120.9 302 43.7
Gohir.D13G092701 Gossypium hirsutum HOM05D003229 ORTHO05D003835 4.8e-25 120.2 463 35.2
Hund20968 Selenicereus undatus HOM05D003229 ORTHO05D003835 6.2e-25 119.8 454 37.0
EL10Ac7g16254 Beta vulgaris HOM05D003229 ORTHO05D003835 8.2e-25 119.4 469 40.9
Duzib177G0022 Durio zibethinus HOM05D003229 ORTHO05D003835 8.2e-25 119.4 470 34.0
Gorai.010G139700 Gossypium raimondii HOM05D003229 ORTHO05D003835 8.2e-25 119.4 463 35.2
Sopen06g030210 Solanum pennellii HOM05D003229 ORTHO05D003835 1.4e-24 118.6 304 48.0
SGA_v2.0_scaffold82G26251 Striga asiatica HOM05D003229 ORTHO05D003835 3.1e-24 117.5 308 42.5
CDE05G3619 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 4.0e-24 117.1 512 39.5
CSS0045009 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 5.3e-24 116.7 287 46.0
Solyc06g073810.4 Solanum lycopersicum HOM05D003229 ORTHO05D003835 5.3e-24 116.7 304 43.1
CSS0043544 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 6.9e-24 116.3 168 56.5
CDE01G0204 Ceratophyllum demersum HOM05D003229 ORTHO05D003835 9.0e-24 115.9 507 40.0
Migut.N02427 Erythranthe guttata HOM05D003229 ORTHO05D003835 3.4e-23 114.0 404 39.4
Potri.009G155500 Populus trichocarpa HOM05D003229 ORTHO05D003835 3.4e-23 114.0 263 48.7
Sabra09G0121900 Salix brachista HOM05D003229 ORTHO05D003835 4.5e-23 113.6 392 41.1
CANSAT35G0213 Cannabis sativa HOM05D003229 ORTHO05D003835 5.8e-23 113.2 448 40.6
SGA_v2.0_scaffold16G07545 Striga asiatica HOM05D003229 ORTHO05D003835 5.8e-23 113.2 336 40.8
Peaxi162Scf01091g00018 Petunia axillaris HOM05D003229 ORTHO05D003835 7.6e-23 112.8 310 40.6
Oeu048812.1 Olea europaea HOM05D003229 ORTHO05D003835 1.0e-22 112.5 414 40.8
arahy.Tifrunner.gnm1.ann1.M286MP Arachis hypogaea HOM05D003229 ORTHO05D003835 1.7e-22 111.7 456 34.6
Oeu048813.5 Olea europaea HOM05D003229 ORTHO05D003835 3.8e-22 110.5 414 40.6
Lj6g0007817 Lotus japonicus HOM05D003229 ORTHO05D003835 5.0e-22 110.2 410 33.9
PGSC0003DMG400005910 Solanum tuberosum HOM05D003229 ORTHO05D003835 6.5e-22 109.8 397 39.5
AT3G43590 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 1.4e-21 108.6 307 32.2
Sed0019248 Sechium edule HOM05D003229 ORTHO05D003835 1.4e-21 108.6 287 34.1
A06p22470 Brassica napus HOM05D003229 ORTHO05D003835 1.9e-21 108.2 315 34.3
A06p22530 Brassica napus HOM05D003229 ORTHO05D003835 1.9e-21 108.2 315 34.3
Glyma.13G028000 Glycine max HOM05D003229 ORTHO05D003835 1.9e-21 108.2 380 37.1
Potri.004G193500 Populus trichocarpa HOM05D003229 ORTHO05D003835 1.9e-21 108.2 325 49.2
BraA06t25329Z Brassica rapa HOM05D003229 ORTHO05D003835 2.5e-21 107.8 168 43.5
ATR0697G070 Amborella trichopoda HOM05D003229 ORTHO05D003835 4.2e-21 107.1 345 41.2
Lj2C839T18 Lonicera japonica HOM05D003229 ORTHO05D003835 5.5e-21 106.7 256 35.5
Sopen11g029360 Solanum pennellii HOM05D003229 ORTHO05D003835 7.1e-21 106.3 303 41.3
C03p68590 Brassica napus HOM05D003229 ORTHO05D003835 9.3e-21 105.9 308 34.7
BolC3t19117H Brassica oleracea HOM05D003229 ORTHO05D003835 9.3e-21 105.9 308 34.7
ECA240G3284 Erigeron canadensis HOM05D003229 ORTHO05D003835 9.3e-21 105.9 295 43.4
THA.LOC104810972 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 1.6e-20 105.1 424 31.1
Rhsim01G0198100 Rhododendron simsii HOM05D003229 ORTHO05D003835 3.5e-20 104.0 96 64.6
Thhalv10019590m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 4.6e-20 103.6 289 32.9
Lsat_1_v5_gn_3_111681 Lactuca sativa HOM05D003229 ORTHO05D003835 4.6e-20 103.6 285 50.2
FAN15G3758 Fragaria x ananassa HOM05D003229 ORTHO05D003835 7.9e-20 102.8 210 35.2
Rhsim13G0199400 Rhododendron simsii HOM05D003229 ORTHO05D003835 1.0e-19 102.4 72 63.9
CARHR287360 Cardamine hirsuta HOM05D003229 ORTHO05D003835 1.3e-19 102.1 319 31.3
DCAR_012260 Daucus carota HOM05D003229 ORTHO05D003835 1.3e-19 102.1 340 32.1
Nitab4.5_0010116g0010 Nicotiana tabacum HOM05D003229 ORTHO05D003835 1.3e-19 102.1 411 33.3
PGR119G2320 Punica granatum HOM05D003229 ORTHO05D003835 1.3e-19 102.1 149 47.0
FAN20G2341 Fragaria x ananassa HOM05D003229 ORTHO05D003835 6.7e-19 99.8 216 35.2
Sabra04G0131600 Salix brachista HOM05D003229 ORTHO05D003835 8.7e-19 99.4 294 38.4
vmacro14302 Vaccinium macrocarpon HOM05D003229 ORTHO05D003835 1.1e-18 99.0 96 62.5
Thhalv10020505m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 2.5e-18 97.8 292 31.5
Sp5g17570 Schrenkiella parvula HOM05D003229 ORTHO05D003835 2.5e-18 97.8 166 41.0
Ah.08g222380 Amaranthus hybridus HOM05D003229 ORTHO05D003835 3.3e-18 97.4 306 37.9
AL5G21420 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 3.3e-18 97.4 166 39.8
MELO3C017380.2 Cucumis melo HOM05D003229 ORTHO05D003835 5.7e-18 96.7 268 28.4
Carub.0005s0918 Capsella rubella HOM05D003229 ORTHO05D003835 7.4e-18 96.3 285 29.8
Ciclev10011928m.g Citrus clementina HOM05D003229 ORTHO05D003835 7.4e-18 96.3 133 36.8
Duzib128G0535 Durio zibethinus HOM05D003229 ORTHO05D003835 7.4e-18 96.3 487 32.2
Aa31LG4G13390 Aethionema arabicum HOM05D003229 ORTHO05D003835 9.7e-18 95.9 282 36.2
MSTRG.12405 Avicennia marina HOM05D003229 ORTHO05D003835 9.7e-18 95.9 299 39.1
AUR62001585 Chenopodium quinoa HOM05D003229 ORTHO05D003835 9.7e-18 95.9 453 30.0
AUR62020197 Chenopodium quinoa HOM05D003229 ORTHO05D003835 1.3e-17 95.5 456 29.2
Lsat_1_v5_gn_0_39260 Lactuca sativa HOM05D003229 ORTHO05D003835 1.6e-17 95.1 324 36.1
Peaxi162Scf00355g00005 Petunia axillaris HOM05D003229 ORTHO05D003835 3.7e-17 94.0 328 32.6
CSS0010675 Camellia sinensis var. sinensis HOM05D003229 ORTHO05D003835 8.2e-17 92.8 193 40.4
AL5G21520 Arabidopsis lyrata HOM05D003229 ORTHO05D003835 4.1e-16 90.5 305 29.8
Carub.0005s0931 Capsella rubella HOM05D003229 ORTHO05D003835 6.9e-16 89.7 291 31.3
DCAR_022907 Daucus carota HOM05D003633 ORTHO05D004245 1.2e-15 89.0 63 57.1
Manes.04G063962 Manihot esculenta HOM05D003229 ORTHO05D003835 2.0e-15 88.2 207 30.4
QL08p055973 Quercus lobata HOM05D006567 ORTHO05D015939 2.0e-15 88.2 63 61.9
CsaV3_1G004530 Cucumis sativus L. HOM05D003229 ORTHO05D003835 4.5e-15 87.0 207 32.9
Aqoxy1G00567 Aquilegia oxysepala HOM05D003229 ORTHO05D003835 2.9e-14 84.3 322 45.0
Sabra04G0131800 Salix brachista HOM05D003229 ORTHO05D003835 2.9e-14 84.3 225 31.1
Atru.chr8.1245 Acer truncatum HOM05D003229 ORTHO05D003835 3.8e-14 84.0 131 33.6
Sed0028007 Sechium edule HOM05D003229 ORTHO05D003835 6.5e-14 83.2 174 35.6
LjContig00564g0024504 Lotus japonicus HOM05D003229 ORTHO05D003835 8.5e-14 82.8 68 54.4
GSVIVG01022494001 Vitis vinifera HOM05D003229 ORTHO05D003835 1.4e-13 82.0 131 32.8
THA.LOC104799740 Tarenaya hassleriana HOM05D003229 ORTHO05D003835 3.2e-13 80.9 287 26.8
TWI74G0877 Tripterygium wilfordii HOM05D003229 ORTHO05D003835 7.2e-13 79.7 60 53.3
SEGI_34455 Sequoiadendron giganteum HOM05D003229 ORTHO05D003835 1.2e-12 79.0 217 30.9
Thecc.05G181700 Theobroma cacao HOM05D003229 ORTHO05D003835 2.1e-12 78.2 81 45.7
CARHR267130 Cardamine hirsuta HOM05D003229 ORTHO05D003835 3.6e-12 77.4 68 48.5
HanXRQChr03g0089231 Helianthus annuus HOM05D003229 ORTHO05D003835 3.6e-12 77.4 303 30.4
TPR.G15596 Trifolium pratense HOM05D003229 ORTHO05D003835 6.1e-12 76.6 464 31.9
Sopen01g025320 Solanum pennellii HOM05D000006 ORTHO05D000001 1.4e-11 75.5 60 55.0
CBR_g8477 Chara braunii HOM05D003229 ORTHO05D000407 1.8e-11 75.1 95 38.9
QL02p079790 Quercus lobata HOM05D003229 ORTHO05D003835 2.3e-11 74.7 97 44.3
CANSAT54G2724 Cannabis sativa HOM05D003229 ORTHO05D003835 3.0e-11 74.3 193 29.5
PGSC0003DMG401021491 Solanum tuberosum HOM05D024157 ORTHO05D025896 3.0e-11 74.3 60 53.3
AagrBONN_evm.TU.Sc2ySwM_368.3251 Anthoceros agrestis HOM05D003229 ORTHO05D003835 5.1e-11 73.6 90 42.2
Ca_16267_v3 Cicer arietinum L. HOM05D003229 ORTHO05D009053 6.7e-11 73.2 349 30.9
Gohir.A13G089500 Gossypium hirsutum HOM05D003229 ORTHO05D003835 6.7e-11 73.2 120 30.8
Ca_06127_v3 Cicer arietinum L. HOM05D003229 ORTHO05D003835 1.1e-10 72.4 371 31.3
Lalb_Chr13g0294131 Lupinus albus HOM05D003229 ORTHO05D003835 1.1e-10 72.4 195 40.0
AT3G43490 Arabidopsis thaliana HOM05D003229 ORTHO05D003835 2.5e-10 71.2 182 29.1
MBI11_g25050_MAGBIO Magnolia biondii HOM05D003229 ORTHO05D003835 5.7e-10 70.1 236 36.9
Gohir.D13G092751 Gossypium hirsutum HOM05D003229 ORTHO05D003835 7.4e-10 69.7 348 31.3
Psat2g023800 Pisum sativum HOM05D003229 ORTHO05D003835 1.7e-09 68.6 48 64.6
TPR.G13300 Trifolium pratense HOM05D003229 ORTHO05D003835 1.7e-09 68.6 82 48.8
MSTRG.26568 Avicennia marina HOM05D003229 ORTHO05D003835 6.3e-09 66.6 144 38.2
Potri.016G063800 Populus trichocarpa HOM05D003229 ORTHO05D003835 6.3e-09 66.6 137 38.0
Thhalv10002168m.g Eutrema salsugineum HOM05D003229 ORTHO05D003835 8.2e-09 66.2 69 60.9
Gorai.010G139800 Gossypium raimondii HOM05D003229 ORTHO05D003835 8.2e-09 66.2 348 32.8
Solyc01g056750.1 Solanum lycopersicum HOM05D003229 ORTHO05D003835 1.1e-08 65.9 60 48.3
ClCG06G014150 Citrullus lanatus HOM05D003229 ORTHO05D003835 1.4e-08 65.5 235 28.1
COL.COLO4_29455 Corchorus olitorius HOM05D003229 ORTHO05D003835 1.8e-08 65.1 213 28.6
Hma1.2p1_0127F.1_g059620 Hydrangea macrophylla HOM05D003229 ORTHO05D003835 2.4e-08 64.7 127 42.5
Pp3c2_2680 Physcomitrium patens HOM05D003229 ORTHO05D003835 2.4e-08 64.7 216 28.7
Dinv25091 Davidia involucrata HOM05D003229 ORTHO05D003835 3.1e-08 64.3 62 48.4
Mapoly0019s0115 Marchantia polymorpha HOM05D003229 ORTHO05D003835 1.2e-07 62.4 189 29.6
DCAR_020672 Daucus carota HOM05D003229 ORTHO05D003835 1.5e-07 62.0 56 42.9
Pp3c1_33300 Physcomitrium patens HOM05D003229 ORTHO05D003835 1.5e-07 62.0 84 39.3
Gohir.D04G093700 Gossypium hirsutum HOM05D003229 ORTHO05D003835 3.4e-07 60.8 97 32.0
Gorai.009G396300 Gossypium raimondii HOM05D003229 ORTHO05D003835 3.4e-07 60.8 97 32.0
Os11g0549680 Oryza sativa ssp. japonica HOM05D003229 ORTHO05D003835 3.4e-07 60.8 45 57.8
Duzib128G1455 Durio zibethinus HOM05D003229 ORTHO05D003835 4.5e-07 60.5 116 30.2
Gohir.A04G056400 Gossypium hirsutum HOM05D003229 ORTHO05D003835 8.5e-06 56.2 51 43.1


User provided reference genes

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