Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 6.4e-195 684.1 400 100.0
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 2.2e-147 526.2 391 74.2
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 1.0e-99 367.9 399 52.1
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 3.3e-98 362.8 403 50.6
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 4.3e-98 362.5 395 52.7
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 5.6e-98 362.1 398 53.0
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 7.3e-98 361.7 393 55.5
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 1.2e-97 360.9 389 52.4
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 4.7e-97 359.0 404 51.2
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 1.1e-96 357.8 399 52.6
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 5.2e-96 355.5 407 49.9
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 8.9e-96 354.8 407 52.8
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 1.2e-95 354.4 379 53.0
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 1.2e-95 354.4 399 52.4
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 1.2e-95 354.4 380 52.4
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.5e-95 354.0 396 52.8
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 3.4e-95 352.8 390 49.5
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 3.4e-95 352.8 390 52.8
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 4.4e-95 352.4 378 49.5
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 7.6e-95 351.7 412 50.5
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 9.9e-95 351.3 400 50.5
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 9.9e-95 351.3 381 55.6
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 2.2e-94 350.1 382 52.4
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 2.9e-94 349.7 381 52.2
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 2.9e-94 349.7 384 52.6
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.9e-94 349.7 384 52.6
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 8.4e-94 348.2 392 55.1
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 1.1e-93 347.8 376 50.8
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 1.9e-93 347.1 373 50.7
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 1.9e-93 347.1 418 50.5
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 3.2e-93 346.3 383 57.2
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 5.4e-93 345.5 399 50.6
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 2.1e-92 343.6 395 49.6
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 2.7e-92 343.2 422 51.7
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 2.7e-92 343.2 389 53.2
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 3.5e-92 342.8 409 49.4
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 6.0e-92 342.0 391 49.4
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 7.8e-92 341.7 379 49.3
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 7.8e-92 341.7 367 56.9
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 1.0e-91 341.3 393 55.5
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 1.3e-91 340.9 373 51.5
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 2.3e-91 340.1 394 47.0
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 2.3e-91 340.1 396 49.2
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 2.3e-91 340.1 377 57.8
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 5.1e-91 339.0 374 48.1
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 5.1e-91 339.0 390 53.8
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 5.1e-91 339.0 395 51.6
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 1.1e-90 337.8 377 56.5
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 1.5e-90 337.4 397 55.2
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 2.5e-90 336.7 377 51.2
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 2.5e-90 336.7 395 49.4
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.5e-90 336.7 367 52.3
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 3.3e-90 336.3 367 53.1
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 3.3e-90 336.3 366 53.6
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 5.6e-90 335.5 374 48.7
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 5.6e-90 335.5 374 48.7
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 9.6e-90 334.7 362 51.1
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 9.6e-90 334.7 366 53.0
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 9.6e-90 334.7 386 49.7
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 1.3e-89 334.3 374 57.2
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 4.8e-89 332.4 401 50.1
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 6.2e-89 332.0 367 50.7
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 1.1e-88 331.3 409 48.4
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.1e-88 331.3 396 51.5
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 1.1e-88 331.3 376 49.7
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 1.1e-88 331.3 459 45.5
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 1.4e-88 330.9 388 48.7
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.4e-88 330.9 462 43.3
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 3.1e-88 329.7 386 49.0
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 3.1e-88 329.7 381 50.7
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 5.3e-88 328.9 390 46.4
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 5.3e-88 328.9 400 49.5
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 3.4e-87 326.2 393 47.6
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 4.4e-87 325.9 379 47.8
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 4.4e-87 325.9 386 46.9
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 4.4e-87 325.9 397 52.6
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 5.8e-87 325.5 403 47.1
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 2.9e-86 323.2 399 49.4
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 8.4e-86 321.6 390 47.2
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 1.9e-85 320.5 395 46.3
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 1.9e-85 320.5 443 44.0
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 2.4e-85 320.1 361 47.4
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 4.2e-85 319.3 359 49.9
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 4.2e-85 319.3 395 52.4
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 2.1e-84 317.0 375 52.5
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 4.6e-84 315.8 470 47.7
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 6.0e-84 315.5 374 47.9
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 1.3e-83 314.3 395 47.6
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 1.3e-83 314.3 382 51.0
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 4.3e-82 309.3 375 47.2
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 7.4e-82 308.5 389 49.6
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 3.6e-81 306.2 456 47.4
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 8.1e-81 305.1 388 45.9
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 2.4e-80 303.5 361 48.8
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 2.2e-78 297.0 367 49.9
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 6.4e-78 295.4 373 44.8
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 6.4e-78 295.4 383 49.1
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 6.0e-76 288.9 405 44.4
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 7.4e-74 282.0 345 49.3
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.4e-72 277.7 336 47.9
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 2.9e-70 270.0 384 43.8
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 1.9e-69 267.3 341 51.0
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 7.4e-66 255.4 621 32.2
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.7e-62 244.2 162 73.5
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 4.2e-61 239.6 375 40.0
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 9.7e-58 228.4 142 78.9
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 1.1e-50 204.9 380 34.5
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 3.7e-49 199.9 380 37.4
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 8.2e-49 198.7 135 68.9
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 2.6e-47 193.7 381 34.4
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 3.9e-43 179.9 400 33.8
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 5.2e-43 179.5 358 34.1
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 2.6e-39 167.2 113 71.7
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 7.2e-37 159.1 207 46.4
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 5.5e-29 132.9 233 32.2
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 3.4e-26 123.6 234 38.9
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 2.4e-24 117.5 99 59.6
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 2.0e-23 114.4 182 36.3
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 1.7e-22 111.3 182 33.5
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.5e-21 106.3 64 78.1
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 2.3e-19 100.9 58 79.3
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 4.4e-18 96.7 176 35.2
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 3.1e-16 90.5 75 52.0
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.0e-15 87.8 59 72.9
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 8.0e-12 75.9 49 67.3


User provided reference genes

Program Settings