Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb199210 Zea mays HOM05D002634 ORTHO05D002558 7.4e-89 330.5 164 100.0
Zm00001eb020450 Zea mays HOM05D002655 ORTHO05D002558 3.2e-68 261.9 144 90.3
Os03g0375200 Oryza sativa ssp. japonica HOM05D002655 ORTHO05D002558 4.4e-49 198.4 146 69.9
FAN20G1018 Fragaria x ananassa HOM05D002655 ORTHO05D002558 2.3e-21 106.3 120 46.7
FvH4_2g07860 Fragaria vesca HOM05D002655 ORTHO05D002558 3.9e-21 105.5 120 46.7
FAN15G0283 Fragaria x ananassa HOM05D002634 ORTHO05D002558 3.9e-21 105.5 120 46.7
Sabra09G0072400 Salix brachista HOM05D002655 ORTHO05D002558 5.1e-21 105.1 120 50.8
FAN24G1942 Fragaria x ananassa HOM05D002655 ORTHO05D002558 1.1e-20 104.0 120 46.7
Nn5g30443 Nelumbo nucifera HOM05D002655 ORTHO05D002558 1.9e-20 103.2 126 46.8
RcHm_v2.0_Chr6g0262281 Rosa chinensis HOM05D002655 ORTHO05D002558 1.9e-20 103.2 120 45.8
Potri.009G094100 Populus trichocarpa HOM05D002655 ORTHO05D002558 2.5e-20 102.8 120 49.2
Lalb_Chr06g0165401 Lupinus albus HOM05D002655 ORTHO05D002558 4.3e-20 102.1 139 41.7
HPP92_009550 Vanilla planifolia HOM05D002655 ORTHO05D002558 4.3e-20 102.1 144 41.7
Manes.17G116700 Manihot esculenta HOM05D002655 ORTHO05D002558 5.6e-20 101.7 121 46.3
FAN27G2566 Fragaria x ananassa HOM05D002655 ORTHO05D002558 1.2e-19 100.5 120 45.8
Hma1.2p1_1023F.1_g249020 Hydrangea macrophylla HOM05D002655 ORTHO05D002558 1.2e-19 100.5 121 46.3
Atru.chr5.2469 Acer truncatum HOM05D002655 ORTHO05D002558 4.7e-19 98.6 120 47.5
Eucgr.L00953 Eucalyptus grandis HOM05D002655 ORTHO05D002558 8.1e-19 97.8 121 47.1
Prupe.8G137000 Prunus persica HOM05D002655 ORTHO05D002558 8.1e-19 97.8 120 45.0
QL11p032810 Quercus lobata HOM05D002655 ORTHO05D002558 8.1e-19 97.8 120 48.3
Psat6g217240 Pisum sativum HOM05D002655 ORTHO05D002558 1.1e-18 97.4 120 42.5
TAR376G0230 Trochodendron aralioides HOM05D002634 ORTHO05D003100 1.1e-18 97.4 119 47.1
Dinv42202 Davidia involucrata HOM05D002655 ORTHO05D002558 1.4e-18 97.1 120 47.5
Cc02_g19370 Coffea canephora HOM05D002655 ORTHO05D002558 1.8e-18 96.7 146 42.5
CiPaw.05G013000 Carya illinoinensis HOM05D002655 ORTHO05D002558 3.1e-18 95.9 117 43.6
Duzib052G0908 Durio zibethinus HOM05D002655 ORTHO05D002558 3.1e-18 95.9 120 45.0
Medtr1g107165 Medicago truncatula HOM05D002655 ORTHO05D002558 3.1e-18 95.9 121 45.5
CANSAT25G3644 Cannabis sativa HOM05D002655 ORTHO05D002558 4.0e-18 95.5 120 45.0
Peaxi162Scf00016g02435 Petunia axillaris HOM05D002655 ORTHO05D002558 4.0e-18 95.5 120 48.3
Eucgr.G01325 Eucalyptus grandis HOM05D002655 ORTHO05D002558 5.2e-18 95.1 121 45.5
Nitab4.5_0014669g0010 Nicotiana tabacum HOM05D002655 ORTHO05D002558 5.2e-18 95.1 120 48.3
Cpa.g.sc106.111 Carica papaya HOM05D002655 ORTHO05D002558 6.8e-18 94.7 149 42.3
Ca_11062_v3 Cicer arietinum L. HOM05D002655 ORTHO05D002558 8.9e-18 94.4 121 44.6
MELO3C019552.2 Cucumis melo HOM05D002655 ORTHO05D002558 8.9e-18 94.4 149 40.9
Nitab4.5_0001480g0110 Nicotiana tabacum HOM05D002655 ORTHO05D002558 8.9e-18 94.4 120 48.3
CAN.G606.17 Capsicum annuum HOM05D002655 ORTHO05D002558 1.5e-17 93.6 120 48.3
Lsat_1_v5_gn_9_112601 Lactuca sativa HOM05D002655 ORTHO05D002558 1.5e-17 93.6 120 45.8
Sed0006288 Sechium edule HOM05D002655 ORTHO05D002558 2.0e-17 93.2 149 43.0
arahy.Tifrunner.gnm1.ann1.U2UZ8D Arachis hypogaea HOM05D002655 ORTHO05D002558 3.4e-17 92.4 120 44.2
VMungo0720G1495 Vigna mungo HOM05D002655 ORTHO05D002558 3.4e-17 92.4 129 40.3
Cfa004602 Carpinus fangiana HOM05D002655 ORTHO05D002558 4.4e-17 92.0 123 44.7
COL.COLO4_32575 Corchorus olitorius HOM05D002655 ORTHO05D002558 5.8e-17 91.7 120 43.3
Migut.B00397 Erythranthe guttata HOM05D002655 ORTHO05D002558 7.6e-17 91.3 124 41.9
PGSC0003DMG400025860 Solanum tuberosum HOM05D002655 ORTHO05D002558 7.6e-17 91.3 120 46.7
MSTRG.20192 Avicennia marina HOM05D002655 ORTHO05D002558 9.9e-17 90.9 123 44.7
ClCG05G010340 Citrullus lanatus HOM05D002655 ORTHO05D002558 9.9e-17 90.9 149 39.6
TWI31G0106 Tripterygium wilfordii HOM05D002655 ORTHO05D002558 9.9e-17 90.9 138 39.9
Gohir.A03G185600 Gossypium hirsutum HOM05D002655 ORTHO05D002558 1.3e-16 90.5 120 45.0
CSS0016508 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 1.7e-16 90.1 120 45.8
CSS0017818 Camellia sinensis var. sinensis HOM05D002655 ORTHO05D002558 1.7e-16 90.1 120 45.8
PSO210G1174 Papaver somniferum HOM05D002655 ORTHO05D002558 1.7e-16 90.1 133 38.3
Phvul.007G041300 Phaseolus vulgaris HOM05D002655 ORTHO05D002558 1.7e-16 90.1 130 40.0
BcaB08g34579 Brassica carinata HOM05D002655 ORTHO05D002558 2.2e-16 89.7 152 37.5
PGR042G3535 Punica granatum HOM05D002655 ORTHO05D002558 2.2e-16 89.7 117 44.4
Sc08g0001340 Simmondsia chinensis HOM05D002655 ORTHO05D002558 2.9e-16 89.4 151 38.4
Sopen01g049700 Solanum pennellii HOM05D002655 ORTHO05D002558 2.9e-16 89.4 120 45.8
Gohir.D02G206848 Gossypium hirsutum HOM05D002655 ORTHO05D002558 3.8e-16 89.0 120 45.0
Gorai.005G234500 Gossypium raimondii HOM05D002655 ORTHO05D002558 3.8e-16 89.0 120 45.0
Haze_10198 Corylus avellana HOM05D002655 ORTHO05D002558 4.9e-16 88.6 123 43.9
Actinidia00403 Actinidia chinensis HOM05D002655 ORTHO05D002558 6.4e-16 88.2 103 47.6
A03p45370 Brassica napus HOM05D002655 ORTHO05D002558 8.4e-16 87.8 152 36.8
CsaV3_3G018150 Cucumis sativus L. HOM05D002655 ORTHO05D002558 8.4e-16 87.8 149 38.9
ECA240G1815 Erigeron canadensis HOM05D003511 ORTHO05D004403 8.4e-16 87.8 140 40.7
Oeu044271.1 Olea europaea HOM05D002655 ORTHO05D002558 8.4e-16 87.8 117 41.9
BcaC01g03073 Brassica carinata HOM05D002655 ORTHO05D002558 1.1e-15 87.4 152 36.8
BolC3t17919H Brassica oleracea HOM05D002655 ORTHO05D002558 1.1e-15 87.4 152 36.8
BraA03t13669Z Brassica rapa HOM05D002655 ORTHO05D002558 1.1e-15 87.4 152 36.8
HanXRQChr03g0068761 Helianthus annuus HOM05D002655 ORTHO05D002558 1.1e-15 87.4 149 41.6
C03p56290 Brassica napus HOM05D002655 ORTHO05D002558 1.4e-15 87.0 152 36.8
PSO170G1869 Papaver somniferum HOM05D002655 ORTHO05D002558 1.4e-15 87.0 113 40.7
Rhsim11G0158300 Rhododendron simsii HOM05D002655 ORTHO05D002558 2.4e-15 86.3 114 43.9
Sp3g28430 Schrenkiella parvula HOM05D002655 ORTHO05D002558 2.4e-15 86.3 156 37.2
CARHR105450 Cardamine hirsuta HOM05D002655 ORTHO05D002558 3.2e-15 85.9 150 36.7
THA.LOC104819551 Tarenaya hassleriana HOM05D002655 ORTHO05D002558 3.2e-15 85.9 150 40.0
AL3G46830 Arabidopsis lyrata HOM05D002655 ORTHO05D002558 4.2e-15 85.5 150 38.0
AT2G15020 Arabidopsis thaliana HOM05D002655 ORTHO05D002558 5.4e-15 85.1 150 37.3
Ciclev10028186m.g Citrus clementina HOM05D002655 ORTHO05D002558 5.4e-15 85.1 120 44.2
MBI16_g02801_MAGBIO Magnolia biondii HOM05D002655 ORTHO05D002558 5.4e-15 85.1 119 41.2
Oeu044272.1 Olea europaea HOM05D002655 ORTHO05D002558 5.4e-15 85.1 117 41.0
Carub.0003s2896 Capsella rubella HOM05D002655 ORTHO05D002558 7.1e-15 84.7 150 36.0
Thhalv10022642m.g Eutrema salsugineum HOM05D002655 ORTHO05D002558 9.2e-15 84.3 154 41.6
Glyma.10G261000 Glycine max HOM05D002655 ORTHO05D002558 1.2e-14 84.0 121 41.3
AUR62039061 Chenopodium quinoa HOM05D002655 ORTHO05D002558 4.6e-14 82.0 121 42.1
Glyma.20G130300 Glycine max HOM05D002655 ORTHO05D002558 4.6e-14 82.0 121 39.7
Aqoxy5G01133 Aquilegia oxysepala HOM05D002655 ORTHO05D002558 7.8e-14 81.3 119 41.2
AUR62010327 Chenopodium quinoa HOM05D002655 ORTHO05D002558 1.3e-13 80.5 121 41.3
DCAR_001654 Daucus carota HOM05D002655 ORTHO05D002558 1.7e-13 80.1 120 41.7
ATR0041G012 Amborella trichopoda HOM05D002655 ORTHO05D002558 2.3e-13 79.7 113 42.5
SGA_v2.0_scaffold519G52675 Striga asiatica HOM05D002655 ORTHO05D002558 2.3e-13 79.7 120 42.5
Ah.08g217500 Amaranthus hybridus HOM05D002655 ORTHO05D002558 3.0e-13 79.3 121 38.8
Duzib248G0667 Durio zibethinus HOM05D002655 ORTHO05D002558 3.0e-13 79.3 120 41.7
unitig_46.g18496 Utricularia gibba HOM05D002655 ORTHO05D002558 4.3e-12 75.5 120 40.0
Oeu037259.2 Olea europaea HOM05D002655 ORTHO05D002558 4.7e-11 72.0 114 35.1
SalBow6G2177 Salvia bowleyana HOM05D002634 ORTHO05D002558 4.7e-11 72.0 83 47.0
Aa31LG8G13010 Aethionema arabicum HOM05D002655 ORTHO05D002558 1.1e-10 70.9 152 33.6
TPR.G19088 Trifolium pratense HOM05D002655 ORTHO05D002558 1.1e-10 70.9 76 46.1
SEGI_04032 Sequoiadendron giganteum HOM05D002655 ORTHO05D002558 4.0e-10 68.9 112 35.7
Thecc.02G110600 Theobroma cacao HOM05D002655 ORTHO05D002558 3.5e-06 55.8 91 41.8


User provided reference genes

Program Settings