Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 1.5e-164 582.8 299 100.0
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 3.3e-127 458.8 237 99.2
Zm00001eb041750 Zea mays HOM05D001580 ORTHO05D001517 2.7e-44 183.3 96 96.9
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 2.4e-37 160.2 94 86.2
Zm00001eb179530 Zea mays HOM05D001580 ORTHO05D001517 1.9e-34 150.6 97 84.5
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.0e-27 128.3 76 84.2
Zm00001eb007290 Zea mays HOM05D012833 ORTHO05D445309 1.1e-24 118.2 59 98.3
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 1.4e-24 117.9 67 82.1
Os08g0431100 Oryza sativa ssp. japonica HOM05D001580 ORTHO05D001517 3.2e-21 106.7 101 68.3
Zm00001eb256290 Zea mays HOM05D012833 ORTHO05D025967 9.2e-21 105.1 63 87.3
Zm00001eb269920 Zea mays HOM05D001580 ORTHO05D001517 2.1e-20 104.0 59 93.2
Zm00001eb011350 Zea mays HOM05D001168 ORTHO05D001044 5.1e-19 99.4 50 94.0
Zm00001eb064430 Zea mays HOM05D012833 ORTHO05D025967 3.3e-18 96.7 59 84.7
Zm00001eb390570 Zea mays HOM05D012833 ORTHO05D025967 3.3e-18 96.7 59 84.7
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.8e-16 90.9 64 62.5
Zm00001eb334210 Zea mays HOM05D004293 ORTHO05D005044 3.4e-15 86.7 51 88.2
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 9.9e-15 85.1 61 59.0
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 2.1e-12 77.4 61 54.1
Zm00001eb126820 Zea mays HOM05D004293 ORTHO05D005044 3.5e-12 76.6 51 78.4
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 1.7e-11 74.3 89 46.1
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 2.5e-10 70.5 81 45.7
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 2.5e-10 70.5 71 47.9
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.3e-10 70.1 71 46.5
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 3.3e-10 70.1 72 45.8
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 7.3e-10 68.9 71 42.3
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 7.3e-10 68.9 65 49.2
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 9.6e-10 68.6 72 44.4
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 9.6e-10 68.6 72 44.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.6e-09 67.8 72 44.4
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 2.1e-09 67.4 72 43.1
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 2.8e-09 67.0 71 43.7
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 3.6e-09 66.6 69 46.4
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 4.8e-09 66.2 68 44.1
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.8e-09 66.2 75 40.0
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 6.2e-09 65.9 107 33.6
Os01g0105900 Oryza sativa ssp. japonica HOM05D004293 ORTHO05D005044 8.1e-09 65.5 51 70.6
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.1e-08 65.1 71 42.3
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 1.1e-08 65.1 72 45.8
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 1.1e-08 65.1 71 43.7
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 1.1e-08 65.1 64 46.9
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 1.4e-08 64.7 71 43.7
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.8e-08 64.3 64 45.3
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.8e-08 64.3 64 46.9
TAR376G0140 Trochodendron aralioides HOM05D004293 ORTHO05D005044 1.8e-08 64.3 51 66.7
Aqoxy6G01151 Aquilegia oxysepala HOM05D004293 ORTHO05D005044 2.4e-08 63.9 51 64.7
Nn5g29655 Nelumbo nucifera HOM05D004293 ORTHO05D005044 2.4e-08 63.9 51 64.7
Nitab4.5_0003265g0120 Nicotiana tabacum HOM05D004293 ORTHO05D005044 2.4e-08 63.9 51 64.7
Nitab4.5_0008031g0020 Nicotiana tabacum HOM05D004293 ORTHO05D005044 2.4e-08 63.9 51 64.7
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 2.4e-08 63.9 65 44.6
CDE06G0346 Ceratophyllum demersum HOM05D004293 ORTHO05D005044 3.1e-08 63.5 51 64.7
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 3.1e-08 63.5 65 46.2
Dinv40005 Davidia involucrata HOM05D004293 ORTHO05D005044 3.1e-08 63.5 51 66.7
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 3.1e-08 63.5 74 43.2
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 4.0e-08 63.2 74 43.2
Dinv39438 Davidia involucrata HOM05D004293 ORTHO05D005044 4.0e-08 63.2 51 66.7
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 5.3e-08 62.8 64 45.3
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.3e-08 62.8 64 43.8
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 5.3e-08 62.8 64 43.8
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 5.3e-08 62.8 64 43.8
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 6.9e-08 62.4 64 48.4
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 6.9e-08 62.4 65 43.1
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 6.9e-08 62.4 64 42.2
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 9.0e-08 62.0 64 45.3
Dinv36104 Davidia involucrata HOM05D004293 ORTHO05D005044 9.0e-08 62.0 51 62.7
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 9.0e-08 62.0 69 44.9
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 9.0e-08 62.0 71 42.3
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 9.0e-08 62.0 65 50.8
CDE02G3095 Ceratophyllum demersum HOM05D004293 ORTHO05D005044 1.2e-07 61.6 51 62.7
TAR628G1187 Trochodendron aralioides HOM05D004293 ORTHO05D005044 1.2e-07 61.6 51 66.7
CAN.G1226.41 Capsicum annuum HOM05D004293 ORTHO05D005044 1.5e-07 61.2 51 62.7
PGSC0003DMG400003693 Solanum tuberosum HOM05D004293 ORTHO05D005044 1.5e-07 61.2 51 62.7
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.0e-07 60.8 64 43.8
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.0e-07 60.8 65 46.2
Eucgr.F01882 Eucalyptus grandis HOM05D004293 ORTHO05D005044 2.0e-07 60.8 51 62.7
Prupe.1G376800 Prunus persica HOM05D004293 ORTHO05D005044 2.0e-07 60.8 51 66.7
Sabra05G0177000 Salix brachista HOM05D004293 ORTHO05D005044 2.0e-07 60.8 51 62.7
SEGI_26481 Sequoiadendron giganteum HOM05D004293 ORTHO05D005044 2.0e-07 60.8 49 67.3
TWI36G0587 Tripterygium wilfordii HOM05D004293 ORTHO05D005044 2.0e-07 60.8 51 68.6
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.0e-07 60.8 69 43.5
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.6e-07 60.5 64 45.3
PSO170G4681 Papaver somniferum HOM05D004293 ORTHO05D005044 2.6e-07 60.5 52 61.5
PSO210G1862 Papaver somniferum HOM05D004293 ORTHO05D005044 2.6e-07 60.5 52 61.5
Peaxi162Scf00140g00021 Petunia axillaris HOM05D004293 ORTHO05D005044 2.6e-07 60.5 51 58.8
PGR031G3321 Punica granatum HOM05D004293 ORTHO05D005044 2.6e-07 60.5 51 66.7
ATR0568G055 Amborella trichopoda HOM05D004293 ORTHO05D005044 3.4e-07 60.1 51 60.8
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 3.4e-07 60.1 66 43.9
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 3.4e-07 60.1 65 41.5
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.4e-07 60.1 64 45.3
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 3.4e-07 60.1 65 41.5
MBI10_g06734_MAGBIO Magnolia biondii HOM05D004293 ORTHO05D005044 3.4e-07 60.1 51 60.8
MD08G1029000 Malus domestica HOM05D004293 ORTHO05D005044 3.4e-07 60.1 51 62.7
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.4e-07 60.1 76 39.5
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 4.4e-07 59.7 64 42.2
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 4.4e-07 59.7 64 42.2
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 4.4e-07 59.7 64 43.8
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 4.4e-07 59.7 64 42.2
FAN15G0341 Fragaria x ananassa HOM05D004293 ORTHO05D005044 4.4e-07 59.7 51 62.7
FAN20G0470 Fragaria x ananassa HOM05D004293 ORTHO05D005044 4.4e-07 59.7 51 62.7
FAN27G1442 Fragaria x ananassa HOM05D004293 ORTHO05D005044 4.4e-07 59.7 51 62.7
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 4.4e-07 59.7 84 38.1
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.4e-07 59.7 76 39.5
Sed0017600 Sechium edule HOM05D004293 ORTHO05D005044 4.4e-07 59.7 51 62.7
GSVIVG01009736001 Vitis vinifera HOM05D004293 ORTHO05D005044 4.4e-07 59.7 51 62.7
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 5.8e-07 59.3 72 40.3
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 5.8e-07 59.3 74 40.5
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 5.8e-07 59.3 62 48.4
Manes.18G022600 Manihot esculenta HOM05D004293 ORTHO05D005044 5.8e-07 59.3 51 62.7
RcHm_v2.0_Chr6g0301341 Rosa chinensis HOM05D004293 ORTHO05D005044 5.8e-07 59.3 51 60.8
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 5.8e-07 59.3 65 44.6
THA.LOC104811379 Tarenaya hassleriana HOM05D004293 ORTHO05D005044 5.8e-07 59.3 47 66.0
CiPaw.15G081500 Carya illinoinensis HOM05D004293 ORTHO05D005044 7.6e-07 58.9 51 62.7
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 7.6e-07 58.9 65 46.2
Hund16444 Selenicereus undatus HOM05D004293 ORTHO05D005044 7.6e-07 58.9 44 68.2
Sc15g0003400 Simmondsia chinensis HOM05D004293 ORTHO05D005044 7.6e-07 58.9 51 60.8
Solyc04g080580.3 Solanum lycopersicum HOM05D004293 ORTHO05D005044 7.6e-07 58.9 51 60.8
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 9.9e-07 58.5 64 43.8
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 9.9e-07 58.5 68 44.1
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 9.9e-07 58.5 64 42.2
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 9.9e-07 58.5 65 46.2
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 9.9e-07 58.5 65 46.2
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 9.9e-07 58.5 64 43.8
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 9.9e-07 58.5 65 46.2
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.3e-06 58.2 66 42.4
CSS0016695 Camellia sinensis var. sinensis HOM05D004293 ORTHO05D005044 1.3e-06 58.2 51 60.8
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.7e-06 57.8 65 43.1
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.7e-06 57.8 64 42.2
Duzib041G0612 Durio zibethinus HOM05D004293 ORTHO05D005044 1.7e-06 57.8 51 58.8
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.7e-06 57.8 68 36.8
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.7e-06 57.8 64 45.3
Potri.002G034000 Populus trichocarpa HOM05D004293 ORTHO05D005044 1.7e-06 57.8 51 60.8
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 1.7e-06 57.8 64 40.6
HPP92_000286 Vanilla planifolia HOM05D004293 ORTHO05D005044 1.7e-06 57.8 51 56.9
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.7e-06 57.8 65 44.6
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 2.2e-06 57.4 64 43.8
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 2.2e-06 57.4 64 43.8
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.2e-06 57.4 64 43.8
HanXRQChr05g0151741 Helianthus annuus HOM05D004293 ORTHO05D005044 2.2e-06 57.4 51 62.7
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 2.2e-06 57.4 96 37.5
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 2.2e-06 57.4 64 37.5
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.2e-06 57.4 64 40.6
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 2.2e-06 57.4 64 39.1
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.9e-06 57.0 74 40.5
ClCG08G014870 Citrullus lanatus HOM05D004293 ORTHO05D005044 2.9e-06 57.0 51 60.8
Lalb_Chr22g0354691 Lupinus albus HOM05D004293 ORTHO05D005044 2.9e-06 57.0 51 58.8
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.9e-06 57.0 62 46.8
Manes.05G157500 Manihot esculenta HOM05D004293 ORTHO05D005044 2.9e-06 57.0 51 58.8
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 2.9e-06 57.0 65 43.1
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 2.9e-06 57.0 64 43.8
Sopen04g034170 Solanum pennellii HOM05D004293 ORTHO05D005044 2.9e-06 57.0 51 60.8
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 3.8e-06 56.6 65 35.4
FvH4_2g39580 Fragaria vesca HOM05D004293 ORTHO05D005044 3.8e-06 56.6 51 62.7
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 3.8e-06 56.6 61 41.0
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 3.8e-06 56.6 71 42.3
Rhsim07G0240800 Rhododendron simsii HOM05D004293 ORTHO05D005044 3.8e-06 56.6 51 62.7
RhsimUnG0051700 Rhododendron simsii HOM05D004293 ORTHO05D005044 3.8e-06 56.6 51 62.7
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 3.8e-06 56.6 64 43.8
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 3.8e-06 56.6 64 42.2
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 4.9e-06 56.2 71 39.4
DCAR_013830 Daucus carota HOM05D004293 ORTHO05D005044 4.9e-06 56.2 51 60.8
vmacro04534 Vaccinium macrocarpon HOM05D004293 ORTHO05D005044 4.9e-06 56.2 72 51.4
MD15G1024500 Malus domestica HOM05D004293 ORTHO05D005044 6.4e-06 55.8 51 58.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 6.4e-06 55.8 61 45.9
Potri.005G229100 Populus trichocarpa HOM05D004293 ORTHO05D005044 6.4e-06 55.8 51 58.8
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 6.4e-06 55.8 61 41.0
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 6.4e-06 55.8 64 42.2
MSTRG.1266 Avicennia marina HOM05D004293 ORTHO05D005044 8.4e-06 55.5 51 56.9
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 8.4e-06 55.5 64 42.2
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 8.4e-06 55.5 64 42.2
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 8.4e-06 55.5 64 42.2
CsaV3_2G028890 Cucumis sativus L. HOM05D004293 ORTHO05D005044 8.4e-06 55.5 52 63.5
Lsat_1_v5_gn_5_27761 Lactuca sativa HOM05D004293 ORTHO05D005044 8.4e-06 55.5 51 58.8
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 8.4e-06 55.5 72 43.1
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 8.4e-06 55.5 72 43.1
Sabra02G0027300 Salix brachista HOM05D004293 ORTHO05D005044 8.4e-06 55.5 51 58.8
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 8.4e-06 55.5 69 40.6
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 8.4e-06 55.5 64 42.2
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 8.4e-06 55.5 86 38.4


User provided reference genes

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