Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb198370 Zea mays HOM05D004971 ORTHO05D006289 1.4e-125 453.0 234 100.0
Os08g0540500 Oryza sativa ssp. japonica HOM05D004971 ORTHO05D006289 1.3e-65 253.8 204 70.6
CDE11G0552 Ceratophyllum demersum HOM05D004971 ORTHO05D006289 2.0e-39 166.8 156 51.9
HPP92_012900 Vanilla planifolia HOM05D004971 ORTHO05D006289 5.9e-39 165.2 160 52.5
HPP92_012921 Vanilla planifolia HOM05D004971 ORTHO05D006289 5.9e-39 165.2 161 52.8
Phvul.002G310900 Phaseolus vulgaris HOM05D004971 ORTHO05D006289 1.7e-38 163.7 161 51.6
CiPaw.03G227700 Carya illinoinensis HOM05D004971 ORTHO05D006289 2.2e-38 163.3 160 51.9
Nn3g18146 Nelumbo nucifera HOM05D004971 ORTHO05D006289 2.2e-38 163.3 162 48.8
Glyma.08G035500 Glycine max HOM05D004971 ORTHO05D006289 2.9e-38 162.9 163 50.9
Manes.16G112100 Manihot esculenta HOM05D004971 ORTHO05D006289 5.0e-38 162.2 161 49.1
VMungo0251G3379 Vigna mungo HOM05D004971 ORTHO05D006289 2.5e-37 159.8 163 51.5
Lalb_Chr05g0223101 Lupinus albus HOM05D004971 ORTHO05D006289 4.2e-37 159.1 163 48.5
CANSAT56G2306 Cannabis sativa HOM05D004971 ORTHO05D006289 1.2e-36 157.5 161 50.9
CANSAT56G1645 Cannabis sativa HOM05D004971 ORTHO05D006289 2.1e-36 156.8 161 50.9
THA.LOC104811095 Tarenaya hassleriana HOM05D004971 ORTHO05D006289 2.1e-36 156.8 158 50.0
Carub.0008s1117 Capsella rubella HOM05D004971 ORTHO05D006289 4.7e-36 155.6 158 50.0
CARHR256940 Cardamine hirsuta HOM05D004971 ORTHO05D006289 7.9e-36 154.8 153 52.3
ClCG06G008900 Citrullus lanatus HOM05D004971 ORTHO05D006289 7.9e-36 154.8 155 50.3
BcaC03g14623 Brassica carinata HOM05D004971 ORTHO05D006289 1.0e-35 154.5 156 48.7
A03p16290 Brassica napus HOM05D004971 ORTHO05D006289 1.0e-35 154.5 145 50.3
BolC2t08195H Brassica oleracea HOM05D004971 ORTHO05D006289 1.0e-35 154.5 156 48.7
AL8G25390 Arabidopsis lyrata HOM05D004971 ORTHO05D006289 1.4e-35 154.1 157 49.7
arahy.Tifrunner.gnm1.ann1.050WC1 Arachis hypogaea HOM05D004971 ORTHO05D006289 1.4e-35 154.1 171 46.2
MELO3C024707.2 Cucumis melo HOM05D004971 ORTHO05D006289 1.4e-35 154.1 155 50.3
RcHm_v2.0_Chr2g0091361 Rosa chinensis HOM05D004971 ORTHO05D006289 1.8e-35 153.7 161 48.4
Aa31LG3G7640 Aethionema arabicum HOM05D004971 ORTHO05D006289 2.3e-35 153.3 184 44.6
A02p12480 Brassica napus HOM05D004971 ORTHO05D006289 2.3e-35 153.3 158 49.4
BraA02t06311Z Brassica rapa HOM05D004971 ORTHO05D006289 2.3e-35 153.3 158 49.4
Atru.chr7.1418 Acer truncatum HOM05D004971 ORTHO05D006289 3.0e-35 152.9 161 49.1
AT5G51130 Arabidopsis thaliana HOM05D004971 ORTHO05D006289 3.0e-35 152.9 157 49.0
Duzib150G1337 Durio zibethinus HOM05D004971 ORTHO05D006289 3.0e-35 152.9 162 51.9
BcaC01g06076 Brassica carinata HOM05D004971 ORTHO05D006289 3.9e-35 152.5 145 49.7
QL01p004043 Quercus lobata HOM05D004971 ORTHO05D006289 3.9e-35 152.5 158 49.4
TPR.G23453 Trifolium pratense HOM05D004971 ORTHO05D006289 3.9e-35 152.5 162 48.8
Medtr8g102950 Medicago truncatula HOM05D004971 ORTHO05D006289 5.2e-35 152.1 162 48.8
Sp6g13340 Schrenkiella parvula HOM05D004971 ORTHO05D006289 6.7e-35 151.8 158 48.7
Thhalv10014188m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 8.8e-35 151.4 151 49.7
BcaB05g24018 Brassica carinata HOM05D004971 ORTHO05D006289 1.1e-34 151.0 151 49.7
C02p20580 Brassica napus HOM05D004971 ORTHO05D006289 1.1e-34 151.0 156 48.1
FvH4_1g05710 Fragaria vesca HOM05D004971 ORTHO05D006289 1.1e-34 151.0 161 49.1
Sabra18G0073100 Salix brachista HOM05D004971 ORTHO05D006289 1.1e-34 151.0 159 49.1
Lsat_1_v5_gn_7_41360 Lactuca sativa HOM05D004971 ORTHO05D006289 1.5e-34 150.6 150 53.3
ECA240G1764 Erigeron canadensis HOM05D004971 ORTHO05D006289 2.0e-34 150.2 154 49.4
Lj4g0001585 Lotus japonicus HOM05D004971 ORTHO05D006289 2.6e-34 149.8 162 48.1
BcaC01g06098 Brassica carinata HOM05D004971 ORTHO05D006289 3.3e-34 149.4 148 52.0
BolC3t14306H Brassica oleracea HOM05D004971 ORTHO05D006289 3.3e-34 149.4 148 52.0
FAN23G0317 Fragaria x ananassa HOM05D001382 ORTHO05D006289 3.3e-34 149.4 161 48.4
TWI12G1172 Tripterygium wilfordii HOM05D004971 ORTHO05D006289 3.3e-34 149.4 155 45.8
GSVIVG01015340001 Vitis vinifera HOM05D004971 ORTHO05D006289 3.3e-34 149.4 183 45.4
BraA03t10920Z Brassica rapa HOM05D004971 ORTHO05D006289 4.4e-34 149.1 146 50.0
Ca_17315_v3 Cicer arietinum L. HOM05D004971 ORTHO05D006289 4.4e-34 149.1 149 50.3
Cc06_g10130 Coffea canephora HOM05D004971 ORTHO05D006289 4.4e-34 149.1 153 51.6
FAN19G1252 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.4e-34 149.1 157 49.0
FAN26G3039 Fragaria x ananassa HOM05D001382 ORTHO05D001266 4.4e-34 149.1 160 48.1
FAN28G1806 Fragaria x ananassa HOM05D001382 ORTHO05D006289 5.7e-34 148.7 160 48.1
Gohir.D07G007800 Gossypium hirsutum HOM05D004971 ORTHO05D006289 5.7e-34 148.7 163 52.1
Gorai.001G007500 Gossypium raimondii HOM05D004971 ORTHO05D006289 5.7e-34 148.7 163 52.1
Potri.018G084700 Populus trichocarpa HOM05D004971 ORTHO05D006289 5.7e-34 148.7 162 48.1
TAR626G1908 Trochodendron aralioides HOM05D001382 ORTHO05D006289 5.7e-34 148.7 162 46.9
TAR636G2606 Trochodendron aralioides HOM05D004971 ORTHO05D006289 5.7e-34 148.7 162 46.9
MD15G1192600 Malus domestica HOM05D004971 ORTHO05D006289 7.4e-34 148.3 175 43.4
HanXRQChr09g0239411 Helianthus annuus HOM05D004971 ORTHO05D006289 9.7e-34 147.9 156 50.0
SGA_v2.0_scaffold22G09903 Striga asiatica HOM05D004971 ORTHO05D006289 9.7e-34 147.9 143 51.0
Psat7g014440 Pisum sativum HOM05D004971 ORTHO05D006289 1.3e-33 147.5 167 46.7
Aqoxy7G01513 Aquilegia oxysepala HOM05D004971 ORTHO05D006289 1.7e-33 147.1 155 47.7
Sopen05g028390 Solanum pennellii HOM05D004971 ORTHO05D006289 1.7e-33 147.1 162 48.1
SGA_v2.0_scaffold20G09148 Striga asiatica HOM05D004971 ORTHO05D006289 1.7e-33 147.1 143 51.0
C03p19180 Brassica napus HOM05D004971 ORTHO05D006289 2.2e-33 146.7 185 44.9
Eucgr.C03795 Eucalyptus grandis HOM05D004971 ORTHO05D006289 2.2e-33 146.7 159 45.3
Gohir.A07G004400 Gossypium hirsutum HOM05D004971 ORTHO05D006289 2.2e-33 146.7 163 51.5
Prupe.7G224700 Prunus persica HOM05D004971 ORTHO05D006289 2.8e-33 146.4 158 45.6
Solyc05g050000.3 Solanum lycopersicum HOM05D004971 ORTHO05D006289 2.8e-33 146.4 162 48.1
Thecc.09G104800 Theobroma cacao HOM05D004971 ORTHO05D006289 3.7e-33 146.0 163 47.2
AUR62021639 Chenopodium quinoa HOM05D004971 ORTHO05D006289 1.8e-32 143.7 159 47.2
Dinv41645 Davidia involucrata HOM05D004971 ORTHO05D006289 1.8e-32 143.7 162 48.1
Lj7A659G31 Lonicera japonica HOM05D004971 ORTHO05D006289 1.8e-32 143.7 162 51.2
MSTRG.19566 Avicennia marina HOM05D004971 ORTHO05D006289 2.4e-32 143.3 163 47.9
arahy.Tifrunner.gnm1.ann1.R8N6MQ Arachis hypogaea HOM05D004971 ORTHO05D006289 3.1e-32 142.9 158 46.2
Rhsim03G0239000 Rhododendron simsii HOM05D004971 ORTHO05D006289 9.1e-32 141.4 162 46.9
Nitab4.5_0000066g0130 Nicotiana tabacum HOM05D004971 ORTHO05D006289 1.2e-31 141.0 161 44.1
Hund26242 Selenicereus undatus HOM05D004971 ORTHO05D006289 1.2e-31 141.0 199 39.2
PSO541G6366 Papaver somniferum HOM05D004971 ORTHO05D006289 1.6e-31 140.6 159 43.4
PSO675G4950 Papaver somniferum HOM05D004971 ORTHO05D006289 1.6e-31 140.6 168 45.8
Nitab4.5_0003331g0010 Nicotiana tabacum HOM05D004971 ORTHO05D006289 2.0e-31 140.2 161 44.1
Actinidia32663 Actinidia chinensis HOM05D004971 ORTHO05D006289 5.9e-31 138.7 162 45.7
CSS0031404 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 7.7e-31 138.3 189 44.4
Migut.J01131 Erythranthe guttata HOM05D004971 ORTHO05D006289 1.0e-30 137.9 151 45.7
Sed0000382 Sechium edule HOM05D004971 ORTHO05D006289 2.9e-30 136.3 150 48.0
Oeu000366.2 Olea europaea HOM05D004971 ORTHO05D006289 3.8e-30 136.0 205 39.0
PGR102G0147 Punica granatum HOM05D004971 ORTHO05D006289 5.0e-30 135.6 149 47.0
unitig_748.g8739 Utricularia gibba HOM05D004971 ORTHO05D006289 1.1e-29 134.4 151 48.3
CsaV3_1G020790 Cucumis sativus L. HOM05D004971 ORTHO05D006289 4.2e-29 132.5 148 44.6
Sc08g0007770 Simmondsia chinensis HOM05D004971 ORTHO05D006289 7.2e-29 131.7 193 42.5
Peaxi162Scf00539g00614 Petunia axillaris HOM05D004971 ORTHO05D006289 2.7e-28 129.8 154 45.5
Cfa003218 Carpinus fangiana HOM05D001382 ORTHO05D001266 4.7e-28 129.0 140 46.4
Nitab4.5_0002165g0080 Nicotiana tabacum HOM05D004971 ORTHO05D006289 4.7e-28 129.0 101 57.4
Lalb_Chr14g0371731 Lupinus albus HOM05D004971 ORTHO05D006289 1.8e-27 127.1 173 41.6
AagrBONN_evm.TU.Sc2ySwM_117.3390 Anthoceros agrestis HOM05D004971 ORTHO05D006289 5.2e-27 125.6 167 42.5
CAN.G399.3 Capsicum annuum HOM05D004971 ORTHO05D006289 5.2e-27 125.6 138 47.1
DCAR_028679 Daucus carota HOM05D004971 ORTHO05D006289 5.2e-27 125.6 142 47.9
COL.COLO4_34800 Corchorus olitorius HOM05D004971 ORTHO05D006289 1.5e-26 124.0 146 46.6
SHI02711 Sapria himalayana HOM05D004971 ORTHO05D006289 5.7e-26 122.1 140 46.4
SMO232G0003 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 4.8e-25 119.0 161 41.0
arahy.Tifrunner.gnm1.ann1.D57MTL Arachis hypogaea HOM05D004971 ORTHO05D006289 6.3e-25 118.6 146 42.5
SMO241G0030 Selaginella moellendorffii HOM05D004971 ORTHO05D006289 1.4e-24 117.5 168 40.5
HanXRQChr03g0061421 Helianthus annuus HOM05D004971 ORTHO05D006289 5.3e-24 115.5 141 43.3
PGSC0003DMG400021659 Solanum tuberosum HOM05D004971 ORTHO05D006289 9.1e-24 114.8 148 43.2
Ciclev10009268m.g Citrus clementina HOM05D004971 ORTHO05D006289 2.7e-23 113.2 89 55.1
AUR62008451 Chenopodium quinoa HOM05D004971 ORTHO05D006289 4.5e-23 112.5 143 42.7
arahy.Tifrunner.gnm1.ann1.2J0XRF Arachis hypogaea HOM05D004971 ORTHO05D006289 1.3e-22 110.9 145 40.0
Haze_02526 Corylus avellana HOM05D004971 ORTHO05D006289 1.3e-22 110.9 127 44.9
SEGI_33858 Sequoiadendron giganteum HOM05D004971 ORTHO05D006289 1.7e-22 110.5 118 42.4
vmacro06238 Vaccinium macrocarpon HOM05D004971 ORTHO05D006289 2.9e-22 109.8 140 45.0
Mapoly0002s0233 Marchantia polymorpha HOM05D004971 ORTHO05D006289 1.1e-21 107.8 80 57.5
Lalb_Chr24g0397391 Lupinus albus HOM05D004971 ORTHO05D006289 1.5e-21 107.5 129 43.4
CBR_g687 Chara braunii HOM05D004971 ORTHO05D006289 1.6e-20 104.0 151 38.4
Pp3c17_15270 Physcomitrium patens HOM05D004971 ORTHO05D006289 8.0e-20 101.7 206 32.5
Haze_02523 Corylus avellana HOM05D004971 ORTHO05D006289 2.3e-19 100.1 119 43.7
Thhalv10027350m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.2e-19 99.0 146 43.2
Thhalv10006518m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.0e-18 97.1 134 39.6
Thhalv10027230m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 2.0e-18 97.1 134 39.6
Lalb_Chr24g0397371 Lupinus albus HOM05D004971 ORTHO05D006289 2.6e-18 96.7 130 43.8
Oeu017816.1 Olea europaea HOM05D004971 ORTHO05D006289 4.4e-18 95.9 139 41.0
Thhalv10026861m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.7e-18 95.5 134 38.8
Thhalv10027410m.g Eutrema salsugineum HOM05D004971 ORTHO05D006289 5.7e-18 95.5 134 38.8
MCO09G154 Micromonas commoda HOM05D004971 ORTHO05D006289 1.4e-16 90.9 123 36.6
CSS0032398 Camellia sinensis var. sinensis HOM05D004971 ORTHO05D006289 9.1e-16 88.2 76 53.9
Cre15.g636450 Chlamydomonas reinhardtii HOM05D004971 ORTHO05D006289 9.1e-16 88.2 76 46.1
Cpa.g.sc40.24 Carica papaya HOM05D004971 ORTHO05D006289 1.6e-15 87.4 51 70.6
MBI04_g02609_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D000022 6.5e-14 82.0 109 43.1
Actinidia07401 Actinidia chinensis HOM05D004971 ORTHO05D006289 2.1e-12 77.0 49 63.3
PRCOL_00000240 Prasinoderma coloniale HOM05D004971 ORTHO05D006289 2.8e-12 76.6 160 31.2
Nitab4.5_0001706g0070 Nicotiana tabacum HOM05D004971 ORTHO05D006289 7.5e-10 68.6 64 45.3
ATR0315G075 Amborella trichopoda HOM05D004971 ORTHO05D006289 8.3e-09 65.1 95 40.0
MD02G1058100 Malus domestica HOM05D004971 ORTHO05D006289 1.4e-08 64.3 70 44.3
MBI19_g24592_MAGBIO Magnolia biondii HOM05D004971 ORTHO05D006289 7.8e-07 58.5 38 60.5


User provided reference genes

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