Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb197360 Zea mays HOM05D005318 ORTHO05D006791 7.6e-76 287.0 132 100.0
Os07g0662900 Oryza sativa ssp. japonica HOM05D005318 ORTHO05D006791 1.5e-60 236.1 116 92.2
MBI19_g45589_MAGBIO Magnolia biondii HOM05D005318 ORTHO05D006791 5.1e-56 221.1 116 84.5
Peaxi162Scf01017g00016 Petunia axillaris HOM05D005318 ORTHO05D006791 1.1e-55 219.9 116 82.8
COL.COLO4_33519 Corchorus olitorius HOM05D005318 ORTHO05D006791 1.5e-55 219.5 116 84.5
QL07p013739 Quercus lobata HOM05D005318 ORTHO05D006791 1.5e-55 219.5 116 85.3
Nitab4.5_0000092g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 2.5e-55 218.8 116 82.8
Nitab4.5_0001388g0020 Nicotiana tabacum HOM05D005318 ORTHO05D006791 2.5e-55 218.8 116 82.8
TAR633G2118 Trochodendron aralioides HOM05D005318 ORTHO05D006791 2.5e-55 218.8 116 84.5
CAN.G39.12 Capsicum annuum HOM05D005318 ORTHO05D006791 5.6e-55 217.6 119 80.7
MD00G1025200 Malus domestica HOM05D005318 ORTHO05D006791 7.4e-55 217.2 116 82.8
Phvul.001G117700 Phaseolus vulgaris HOM05D005318 ORTHO05D006791 7.4e-55 217.2 116 82.8
Manes.08G162200 Manihot esculenta HOM05D005318 ORTHO05D006791 9.6e-55 216.9 116 83.6
Aqoxy1G00050 Aquilegia oxysepala HOM05D005318 ORTHO05D006791 1.3e-54 216.5 116 81.9
Gorai.010G128900 Gossypium raimondii HOM05D005318 ORTHO05D006791 1.3e-54 216.5 116 81.9
Potri.016G028900 Populus trichocarpa HOM05D005318 ORTHO05D006791 1.6e-54 216.1 116 83.6
Prupe.7G019400 Prunus persica HOM05D005318 ORTHO05D006791 1.6e-54 216.1 116 81.0
Glyma.03G121100 Glycine max HOM05D005318 ORTHO05D006791 2.1e-54 215.7 116 81.9
Gohir.A06G109000 Gossypium hirsutum HOM05D005318 ORTHO05D006791 2.1e-54 215.7 116 82.8
Sabra16G0033000 Salix brachista HOM05D005318 ORTHO05D006791 2.1e-54 215.7 116 82.8
ATR0782G050 Amborella trichopoda HOM05D005318 ORTHO05D006791 2.8e-54 215.3 116 82.8
Sc19g0007930 Simmondsia chinensis HOM05D005318 ORTHO05D006791 2.8e-54 215.3 116 82.8
Gohir.D06G113100 Gossypium hirsutum HOM05D005318 ORTHO05D006791 3.7e-54 214.9 116 81.0
Atru.chr1.1378 Acer truncatum HOM05D005318 ORTHO05D006791 6.2e-54 214.2 116 81.9
Solyc02g020980.4 Solanum lycopersicum HOM05D005318 ORTHO05D006791 6.2e-54 214.2 116 80.2
Sopen02g004490 Solanum pennellii HOM05D005318 ORTHO05D006791 6.2e-54 214.2 116 80.2
Sopen02g004780 Solanum pennellii HOM05D005318 ORTHO05D006791 6.2e-54 214.2 116 80.2
Thecc.05G118400 Theobroma cacao HOM05D005318 ORTHO05D006791 6.2e-54 214.2 116 81.9
Duzib128G1115 Durio zibethinus HOM05D005318 ORTHO05D006791 8.1e-54 213.8 116 82.8
FvH4_1g29260 Fragaria vesca HOM05D005318 ORTHO05D006791 8.1e-54 213.8 116 81.9
FAN23G1756 Fragaria x ananassa HOM05D005318 ORTHO05D006791 8.1e-54 213.8 116 81.9
FAN26G2899 Fragaria x ananassa HOM05D005318 ORTHO05D006791 8.1e-54 213.8 116 81.9
RhsimUnG0019600 Rhododendron simsii HOM05D005318 ORTHO05D006791 8.1e-54 213.8 116 81.9
Actinidia37854 Actinidia chinensis HOM05D005318 ORTHO05D006791 1.1e-53 213.4 116 81.0
ClCG04G005890 Citrullus lanatus HOM05D005318 ORTHO05D006791 1.1e-53 213.4 116 81.0
Sed0003650 Sechium edule HOM05D005318 ORTHO05D006791 1.4e-53 213.0 119 79.0
CsaV3_4G029230 Cucumis sativus L. HOM05D005318 ORTHO05D006791 1.8e-53 212.6 116 81.0
FAN19G2285 Fragaria x ananassa HOM05D005318 ORTHO05D006791 1.8e-53 212.6 116 81.9
Lj1g0025305 Lotus japonicus HOM05D005318 ORTHO05D006791 1.8e-53 212.6 116 81.0
arahy.Tifrunner.gnm1.ann1.HZCB2X Arachis hypogaea HOM05D005318 ORTHO05D006791 2.4e-53 212.2 116 81.9
arahy.Tifrunner.gnm1.ann1.PFNU0X Arachis hypogaea HOM05D005318 ORTHO05D006791 2.4e-53 212.2 116 81.9
Glyma.19G125800 Glycine max HOM05D005318 ORTHO05D006791 2.4e-53 212.2 116 80.2
CSS0014915 Camellia sinensis var. sinensis HOM05D005318 ORTHO05D006791 3.1e-53 211.8 116 81.0
Cc06_g21270 Coffea canephora HOM05D005318 ORTHO05D006791 4.0e-53 211.5 116 79.3
FAN28G1591 Fragaria x ananassa HOM05D005318 ORTHO05D006791 4.0e-53 211.5 116 81.0
Medtr7g088740 Medicago truncatula HOM05D005318 ORTHO05D006791 5.3e-53 211.1 116 80.2
Sabra06G0021100 Salix brachista HOM05D005318 ORTHO05D006791 5.3e-53 211.1 116 81.0
Migut.K00161 Erythranthe guttata HOM05D005318 ORTHO05D006791 9.0e-53 210.3 116 79.3
vmacro07764 Vaccinium macrocarpon HOM05D005318 ORTHO05D006791 9.0e-53 210.3 116 80.2
Hund24536 Selenicereus undatus HOM05D005318 ORTHO05D006791 2.6e-52 208.8 116 77.6
CARHR135960 Cardamine hirsuta HOM05D005318 ORTHO05D006791 3.4e-52 208.4 116 79.3
Cpa.g.sc92.60 Carica papaya HOM05D005318 ORTHO05D006791 3.4e-52 208.4 116 80.2
HanXRQChr06g0177301 Helianthus annuus HOM05D005318 ORTHO05D006791 3.4e-52 208.4 116 78.4
Psat0s698g0160 Pisum sativum HOM05D005318 ORTHO05D006791 4.5e-52 208.0 116 78.4
Ca_08698_v3 Cicer arietinum L. HOM05D005318 ORTHO05D006791 5.8e-52 207.6 116 77.6
FAN06G1462 Fragaria x ananassa HOM05D005318 ORTHO05D006791 5.8e-52 207.6 116 80.2
Lsat_1_v5_gn_8_83900 Lactuca sativa HOM05D005318 ORTHO05D006791 7.6e-52 207.2 116 78.4
Potri.006G031700 Populus trichocarpa HOM05D005318 ORTHO05D006791 1.7e-51 206.1 116 77.6
HPP92_014255 Vanilla planifolia HOM05D005318 ORTHO05D006791 1.7e-51 206.1 116 78.4
THA.LOC104803226 Tarenaya hassleriana HOM05D005318 ORTHO05D006791 2.2e-51 205.7 116 76.7
unitig_736.g22282 Utricularia gibba HOM05D005318 ORTHO05D006791 2.2e-51 205.7 116 78.4
Carub.0004s2316 Capsella rubella HOM05D005318 ORTHO05D006791 3.8e-51 204.9 116 75.9
CDE08G1108 Ceratophyllum demersum HOM05D005318 ORTHO05D006791 3.8e-51 204.9 116 77.6
ECA236G3220 Erigeron canadensis HOM05D005318 ORTHO05D006791 4.9e-51 204.5 116 78.4
Thhalv10016195m.g Eutrema salsugineum HOM05D005318 ORTHO05D006791 6.4e-51 204.1 116 76.7
Aa31LG3G1260 Aethionema arabicum HOM05D005318 ORTHO05D006791 1.1e-50 203.4 117 76.9
A05p01930 Brassica napus HOM05D005318 ORTHO05D006791 1.4e-50 203.0 116 75.0
C04p02280 Brassica napus HOM05D005318 ORTHO05D006791 1.4e-50 203.0 116 75.0
BolC4t21874H Brassica oleracea HOM05D005318 ORTHO05D006791 1.4e-50 203.0 116 75.0
BraA05t19191Z Brassica rapa HOM05D005318 ORTHO05D006791 1.4e-50 203.0 116 75.0
DCAR_013530 Daucus carota HOM05D005318 ORTHO05D006791 7.1e-50 200.7 122 74.6
PGR142G3097 Punica granatum HOM05D005318 ORTHO05D006791 3.5e-49 198.4 116 76.7
GSVIVG01025810001 Vitis vinifera HOM05D005318 ORTHO05D006791 6.0e-49 197.6 116 78.4
RcHm_v2.0_Chr3g0494731 Rosa chinensis HOM05D005318 ORTHO05D006791 7.9e-49 197.2 116 75.9
TWI74G0513 Tripterygium wilfordii HOM05D005318 ORTHO05D006791 1.0e-48 196.8 116 76.7
Lj2A411T33 Lonicera japonica HOM05D005318 ORTHO05D006791 1.3e-48 196.4 116 76.7
Cfa019951 Carpinus fangiana HOM05D005318 ORTHO05D006791 3.0e-48 195.3 116 75.9
Eucgr.K01679 Eucalyptus grandis HOM05D005318 ORTHO05D006791 3.9e-48 194.9 116 75.0
Oeu064748.1 Olea europaea HOM05D005318 ORTHO05D006791 6.7e-48 194.1 116 75.0
Oeu064749.1 Olea europaea HOM05D005318 ORTHO05D006791 6.7e-48 194.1 116 75.0
AL4G38790 Arabidopsis lyrata HOM05D005318 ORTHO05D006791 1.5e-47 193.0 116 71.6
Dinv26400 Davidia involucrata HOM05D005318 ORTHO05D006791 1.5e-47 193.0 116 75.9
Ciclev10010989m.g Citrus clementina HOM05D005318 ORTHO05D006791 1.9e-47 192.6 116 73.3
AUR62021029 Chenopodium quinoa HOM05D005318 ORTHO05D006791 3.3e-47 191.8 116 73.3
CANSAT64G0498 Cannabis sativa HOM05D005318 ORTHO05D006791 4.3e-47 191.4 116 75.0
Mapoly0011s0190 Marchantia polymorpha HOM05D005318 ORTHO05D006791 4.3e-47 191.4 116 69.0
AT2G40840 Arabidopsis thaliana HOM05D005318 ORTHO05D006791 5.6e-47 191.0 116 71.6
CiPaw.09G051900 Carya illinoinensis HOM05D005318 ORTHO05D006791 5.6e-47 191.0 116 73.3
AUR62018414 Chenopodium quinoa HOM05D005318 ORTHO05D006791 5.6e-47 191.0 116 72.4
Ah.04g150540 Amaranthus hybridus HOM05D005318 ORTHO05D006791 7.4e-47 190.7 116 73.3
Sp4g23170 Schrenkiella parvula HOM05D005318 ORTHO05D006791 7.4e-47 190.7 116 71.6
SMO203G0025 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 1.8e-45 186.0 116 68.1
SMO327G0045 Selaginella moellendorffii HOM05D005318 ORTHO05D006791 2.4e-45 185.7 116 68.1
EL10Ac3g07301 Beta vulgaris HOM05D005318 ORTHO05D006791 3.1e-45 185.3 116 70.7
Lalb_Chr14g0365451 Lupinus albus HOM05D005318 ORTHO05D006791 3.1e-45 185.3 116 71.6
Pp3c15_25660 Physcomitrium patens HOM05D005318 ORTHO05D006791 1.2e-44 183.3 116 67.2
PSO339G3620 Papaver somniferum HOM05D005318 ORTHO05D006791 7.6e-44 180.6 116 70.7
AagrBONN_evm.TU.Sc2ySwM_344.1228 Anthoceros agrestis HOM05D005318 ORTHO05D006791 1.3e-43 179.9 116 66.4
PSO384G1877 Papaver somniferum HOM05D005318 ORTHO05D006791 1.9e-42 176.0 116 69.0
BcaC02g12738 Brassica carinata HOM05D005318 ORTHO05D006791 2.7e-41 172.2 124 63.7
SGA_v2.0_scaffold240G44129 Striga asiatica HOM05D005318 ORTHO05D006791 6.7e-40 167.5 103 72.8
CBR_g6687 Chara braunii HOM05D005318 ORTHO05D006791 1.1e-39 166.8 116 61.2
Oeu060769.1 Olea europaea HOM05D005318 ORTHO05D006791 4.2e-34 148.3 102 68.6
PRCOL_00001049 Prasinoderma coloniale HOM05D005318 ORTHO05D006791 5.5e-34 147.9 116 55.2
Cre02.g095126 Chlamydomonas reinhardtii HOM05D005318 ORTHO05D006791 4.3e-31 138.3 116 55.2
MCO02G281 Micromonas commoda HOM05D005318 ORTHO05D006791 1.3e-27 126.7 116 51.7
TPR.G36183 Trifolium pratense HOM05D005318 ORTHO05D006791 4.7e-25 118.2 80 65.0
Haze_20288 Corylus avellana HOM05D005318 ORTHO05D006791 9.1e-21 104.0 50 94.0
MELO3C019135.2 Cucumis melo HOM05D005318 ORTHO05D006791 2.0e-20 102.8 50 92.0
TPR.G23186 Trifolium pratense HOM05D005318 ORTHO05D006791 7.7e-20 100.9 51 90.2


User provided reference genes

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