Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb196980 Zea mays HOM05D003642 ORTHO05D004460 4.7e-230 800.8 402 100.0
Os12g0151500 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.1e-154 550.4 405 71.6
Zm00001eb092710 Zea mays HOM05D003642 ORTHO05D004460 2.5e-130 469.5 343 70.6
Zm00001eb366950 Zea mays HOM05D003642 ORTHO05D004460 1.1e-82 311.2 294 55.1
Os01g0858900 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 9.6e-82 308.1 290 55.2
Zm00001eb147290 Zea mays HOM05D003642 ORTHO05D004460 2.1e-81 307.0 409 45.5
HPP92_011490 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.4e-80 303.5 420 45.5
HPP92_006804 Vanilla planifolia HOM05D003642 ORTHO05D004460 1.4e-77 294.3 236 60.2
RcHm_v2.0_Chr5g0044221 Rosa chinensis HOM05D003642 ORTHO05D004460 1.9e-77 293.9 395 45.6
MD03G1142400 Malus domestica HOM05D003642 ORTHO05D004460 7.2e-77 292.0 243 60.1
Nitab4.5_0002002g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 9.3e-77 291.6 366 46.4
Prupe.6G127500 Prunus persica HOM05D003642 ORTHO05D004460 9.3e-77 291.6 237 59.9
FAN25G1659 Fragaria x ananassa HOM05D003642 ORTHO05D004460 1.2e-76 291.2 395 45.8
CDE08G0849 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 2.7e-76 290.0 238 57.1
Eucgr.B03872 Eucalyptus grandis HOM05D003642 ORTHO05D004460 3.6e-76 289.7 236 60.2
Nitab4.5_0005324g0040 Nicotiana tabacum HOM05D003642 ORTHO05D004460 3.6e-76 289.7 366 46.2
MD11G1162900 Malus domestica HOM05D003642 ORTHO05D004460 6.1e-76 288.9 243 59.7
ATR0820G225 Amborella trichopoda HOM05D003642 ORTHO05D004460 7.9e-76 288.5 234 58.5
Aqoxy2G01228 Aquilegia oxysepala HOM05D003642 ORTHO05D004460 1.0e-75 288.1 272 53.3
Hma1.2p1_0305F.1_g119710 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.0e-75 288.1 359 45.7
Hma1.2p1_0305F.1_g119720 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.0e-75 288.1 359 45.7
Hma1.2p1_0578F.1_g182375 Hydrangea macrophylla HOM05D003642 ORTHO05D004460 1.0e-75 288.1 359 45.7
Lj1A233T8 Lonicera japonica HOM05D003642 ORTHO05D004460 1.8e-75 287.3 310 50.6
PGSC0003DMG400007143 Solanum tuberosum HOM05D003642 ORTHO05D004460 1.8e-75 287.3 417 45.3
Actinidia07238 Actinidia chinensis HOM05D003642 ORTHO05D004460 2.3e-75 287.0 367 45.2
Thecc.09G285800 Theobroma cacao HOM05D003642 ORTHO05D004460 2.3e-75 287.0 232 59.5
ECA248G0168 Erigeron canadensis HOM05D003642 ORTHO05D002466 5.1e-75 285.8 268 54.9
FAN21G1092 Fragaria x ananassa HOM05D003642 ORTHO05D004460 5.1e-75 285.8 395 45.3
PSO384G4986 Papaver somniferum HOM05D003642 ORTHO05D004460 6.7e-75 285.4 282 53.2
FAN16G3636 Fragaria x ananassa HOM05D003642 ORTHO05D004460 8.7e-75 285.0 368 47.0
CiPaw.13G137400 Carya illinoinensis HOM05D003642 ORTHO05D004460 1.1e-74 284.6 232 59.5
Glyma.11G184200 Glycine max HOM05D003642 ORTHO05D004460 1.1e-74 284.6 328 48.8
Lj3g0020685 Lotus japonicus HOM05D003642 ORTHO05D004460 1.1e-74 284.6 323 50.2
CAN.G919.22 Capsicum annuum HOM05D003642 ORTHO05D004460 1.5e-74 284.3 409 45.0
Lalb_Chr03g0028031 Lupinus albus HOM05D003642 ORTHO05D004460 1.5e-74 284.3 323 49.8
PGR102G1012 Punica granatum HOM05D003642 ORTHO05D004460 1.5e-74 284.3 236 59.3
ClCG02G022190 Citrullus lanatus HOM05D003642 ORTHO05D004460 1.9e-74 283.9 236 58.9
COL.COLO4_19910 Corchorus olitorius HOM05D003642 ORTHO05D004460 1.9e-74 283.9 236 58.5
Nn6g34944 Nelumbo nucifera HOM05D003642 ORTHO05D004460 3.3e-74 283.1 237 59.9
CsaV3_6G015050 Cucumis sativus L. HOM05D003642 ORTHO05D004460 5.7e-74 282.3 236 58.1
MBI01_g03598_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 5.7e-74 282.3 237 57.0
SEGI_33073 Sequoiadendron giganteum HOM05D003642 ORTHO05D004460 5.7e-74 282.3 243 57.2
CDE06G1048 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 7.4e-74 282.0 238 56.3
Duzib150G1635 Durio zibethinus HOM05D003642 ORTHO05D004460 7.4e-74 282.0 236 57.2
Peaxi162Scf00091g00013 Petunia axillaris HOM05D003642 ORTHO05D004460 9.7e-74 281.6 352 44.9
TWI31G0358 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 9.7e-74 281.6 232 58.6
CDE02G0744 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 1.6e-73 280.8 232 56.9
MELO3C021417.2 Cucumis melo HOM05D003642 ORTHO05D004460 2.2e-73 280.4 236 58.1
SGA_v2.0_scaffold22G09875 Striga asiatica HOM05D003642 ORTHO05D004460 2.2e-73 280.4 415 42.9
THA.LOC104800538 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 2.2e-73 280.4 232 58.6
TAR369G0447 Trochodendron aralioides HOM05D003642 ORTHO05D004460 2.2e-73 280.4 232 59.1
Zm00001eb426190 Zea mays HOM05D003642 ORTHO05D004460 2.2e-73 280.4 416 45.4
Sopen06g030830 Solanum pennellii HOM05D003642 ORTHO05D004460 2.8e-73 280.0 417 44.8
Ca_19399_v3 Cicer arietinum L. HOM05D003642 ORTHO05D004460 3.7e-73 279.6 236 58.1
Psat7g189000 Pisum sativum HOM05D003642 ORTHO05D004460 4.8e-73 279.3 323 48.9
Solyc06g074370.3 Solanum lycopersicum HOM05D003642 ORTHO05D004460 4.8e-73 279.3 409 45.0
SGA_v2.0_scaffold147G36369 Striga asiatica HOM05D003642 ORTHO05D004460 8.2e-73 278.5 262 53.4
TPR.G17216 Trifolium pratense HOM05D003642 ORTHO05D004460 8.2e-73 278.5 236 58.1
VMungo1127G0822 Vigna mungo HOM05D003642 ORTHO05D004460 8.2e-73 278.5 237 58.6
SalBow6G1534 Salvia bowleyana HOM05D003642 ORTHO05D004460 1.1e-72 278.1 238 58.4
Sed0019020 Sechium edule HOM05D003642 ORTHO05D004460 1.1e-72 278.1 236 56.8
Atru.chr3.3290 Acer truncatum HOM05D003642 ORTHO05D004460 1.4e-72 277.7 232 58.2
Gohir.A05G081500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.4e-72 277.7 236 56.8
Gohir.D07G113300 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.4e-72 277.7 232 58.6
Gorai.001G121600 Gossypium raimondii HOM05D003642 ORTHO05D004460 1.4e-72 277.7 232 58.6
Phvul.011G093000 Phaseolus vulgaris HOM05D003642 ORTHO05D004460 1.4e-72 277.7 237 57.8
Duzib170G0814 Durio zibethinus HOM05D003642 ORTHO05D004460 1.8e-72 277.3 232 58.2
Glyma.12G088200 Glycine max HOM05D003642 ORTHO05D004460 1.8e-72 277.3 242 56.6
MBI17_g01557_MAGBIO Magnolia biondii HOM05D003642 ORTHO05D004460 1.8e-72 277.3 232 58.6
Medtr4g053520 Medicago truncatula HOM05D003642 ORTHO05D004460 1.8e-72 277.3 426 43.0
HanXRQChr01g0024131 Helianthus annuus HOM05D003642 ORTHO05D004460 2.4e-72 276.9 266 53.8
HPP92_025134 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.4e-72 276.9 272 52.6
HPP92_026090 Vanilla planifolia HOM05D003642 ORTHO05D004460 2.4e-72 276.9 272 52.6
Cc01_g09370 Coffea canephora HOM05D003642 ORTHO05D004460 3.1e-72 276.6 414 44.4
Gohir.A07G109500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 4.1e-72 276.2 232 58.2
Gorai.009G086400 Gossypium raimondii HOM05D003642 ORTHO05D004460 4.1e-72 276.2 236 56.4
Migut.D02354 Erythranthe guttata HOM05D003642 ORTHO05D004460 6.9e-72 275.4 365 45.2
Lsat_1_v5_gn_1_61681 Lactuca sativa HOM05D003642 ORTHO05D004460 6.9e-72 275.4 268 52.6
Zm00001eb077930 Zea mays HOM05D003642 ORTHO05D004460 9.1e-72 275.0 240 57.9
Haze_23398 Corylus avellana HOM05D003642 ORTHO05D004460 1.2e-71 274.6 233 59.2
Manes.11G160800 Manihot esculenta HOM05D003642 ORTHO05D004460 1.5e-71 274.2 232 58.6
Os04g0506800 Oryza sativa ssp. japonica HOM05D003642 ORTHO05D004460 1.5e-71 274.2 246 55.3
Eucgr.B03871 Eucalyptus grandis HOM05D003642 ORTHO05D004460 2.0e-71 273.9 224 58.9
FvH4_3g24660 Fragaria vesca HOM05D003642 ORTHO05D004460 2.0e-71 273.9 376 46.3
Manes.04G004900 Manihot esculenta HOM05D003642 ORTHO05D004460 3.4e-71 273.1 236 57.6
Sabra04G0123900 Salix brachista HOM05D003642 ORTHO05D004460 4.5e-71 272.7 258 53.9
vmacro03309 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 4.5e-71 272.7 426 40.6
Actinidia24206 Actinidia chinensis HOM05D003642 ORTHO05D004460 5.9e-71 272.3 343 47.8
Nn2g14115 Nelumbo nucifera HOM05D003642 ORTHO05D004460 5.9e-71 272.3 398 44.5
Oeu002383.1 Olea europaea HOM05D003642 ORTHO05D004460 5.9e-71 272.3 237 55.7
CANSAT54G0701 Cannabis sativa HOM05D003642 ORTHO05D004460 7.7e-71 271.9 236 56.8
Cfa010037 Carpinus fangiana HOM05D003642 ORTHO05D004460 7.7e-71 271.9 236 57.6
Dinv29465 Davidia involucrata HOM05D003642 ORTHO05D004460 1.0e-70 271.6 339 46.6
Lsat_1_v5_gn_6_40461 Lactuca sativa HOM05D003642 ORTHO05D004460 1.0e-70 271.6 423 42.3
unitig_0.g1479 Utricularia gibba HOM05D003642 ORTHO05D004460 1.0e-70 271.6 266 51.1
HanXRQChr11g0346801 Helianthus annuus HOM05D003642 ORTHO05D004460 1.3e-70 271.2 232 58.2
THA.LOC104826418 Tarenaya hassleriana HOM05D003642 ORTHO05D004460 1.3e-70 271.2 235 57.0
HanXRQChr12g0364601 Helianthus annuus HOM05D003642 ORTHO05D004460 2.2e-70 270.4 263 53.2
Ah.08g215830 Amaranthus hybridus HOM05D003642 ORTHO05D004460 2.9e-70 270.0 236 55.5
TAR623G1689 Trochodendron aralioides HOM05D003642 ORTHO05D004460 2.9e-70 270.0 232 58.2
BcaB07g34070 Brassica carinata HOM05D003642 ORTHO05D004460 3.8e-70 269.6 237 55.7
Potri.004G184200 Populus trichocarpa HOM05D003642 ORTHO05D004460 3.8e-70 269.6 236 56.4
DCAR_012184 Daucus carota HOM05D003642 ORTHO05D004460 5.0e-70 269.2 236 54.2
Sc12g0004420 Simmondsia chinensis HOM05D003642 ORTHO05D004460 1.1e-69 268.1 237 54.4
Glyma.12G088100 Glycine max HOM05D003642 ORTHO05D004460 1.4e-69 267.7 237 56.1
vmacro03307 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 1.9e-69 267.3 242 56.2
Potri.009G144000 Populus trichocarpa HOM05D003642 ORTHO05D004460 2.5e-69 266.9 236 55.1
MSTRG.18752 Avicennia marina HOM05D003642 ORTHO05D004460 4.2e-69 266.2 340 45.6
Ciclev10028611m.g Citrus clementina HOM05D003642 ORTHO05D004460 4.2e-69 266.2 236 55.1
Thhalv10007826m.g Eutrema salsugineum HOM05D003642 ORTHO05D004460 4.2e-69 266.2 237 54.0
EL10Ac7g15808 Beta vulgaris HOM05D003642 ORTHO05D004460 7.2e-69 265.4 236 55.1
BraA06t23738Z Brassica rapa HOM05D003642 ORTHO05D004460 7.2e-69 265.4 236 55.5
QL01p012516 Quercus lobata HOM05D003642 ORTHO05D004460 7.2e-69 265.4 234 56.4
Sabra09G0111700 Salix brachista HOM05D003642 ORTHO05D004460 1.2e-68 264.6 236 54.7
Sabra09G0114400 Salix brachista HOM05D003642 ORTHO05D004460 1.2e-68 264.6 236 54.7
Sp1g06910 Schrenkiella parvula HOM05D003642 ORTHO05D004460 1.2e-68 264.6 237 53.6
CARHR008130 Cardamine hirsuta HOM05D003642 ORTHO05D004460 2.1e-68 263.8 233 54.9
Mapoly0005s0249 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.1e-68 263.8 237 55.3
Rhsim13G0110400 Rhododendron simsii HOM05D003642 ORTHO05D004460 2.1e-68 263.8 409 40.8
BcaB07g34071 Brassica carinata HOM05D003642 ORTHO05D004460 2.7e-68 263.5 236 55.1
C05p06380 Brassica napus HOM05D003642 ORTHO05D004460 2.7e-68 263.5 236 55.1
Gohir.D05G084500 Gossypium hirsutum HOM05D003642 ORTHO05D004460 2.7e-68 263.5 236 54.7
A06p05300 Brassica napus HOM05D003642 ORTHO05D004460 3.6e-68 263.1 236 55.1
ECA233G1545 Erigeron canadensis HOM05D003642 ORTHO05D004460 3.6e-68 263.1 232 54.3
BolC5t29393H Brassica oleracea HOM05D003642 ORTHO05D004460 7.9e-68 261.9 236 54.7
AUR62039222 Chenopodium quinoa HOM05D003642 ORTHO05D004460 7.9e-68 261.9 420 39.3
PSO210G3660 Papaver somniferum HOM05D003642 ORTHO05D004460 7.9e-68 261.9 414 41.3
AL1G18680 Arabidopsis lyrata HOM05D003642 ORTHO05D004460 2.3e-67 260.4 233 53.6
AT1G08280 Arabidopsis thaliana HOM05D003642 ORTHO05D004460 2.3e-67 260.4 233 54.1
CSS0018533 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 2.3e-67 260.4 410 42.0
SMO145G0137 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 3.0e-67 260.0 233 57.1
vmacro03308 Vaccinium macrocarpon HOM05D003642 ORTHO05D004460 5.1e-67 259.2 244 52.9
AUR62009777 Chenopodium quinoa HOM05D003642 ORTHO05D004460 6.7e-67 258.8 403 40.0
Glyma.12G088000 Glycine max HOM05D003642 ORTHO05D004460 6.7e-67 258.8 246 52.8
Carub.0001s0763 Capsella rubella HOM05D003642 ORTHO05D004460 8.8e-67 258.5 237 52.3
Gohir.A08G004800 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.5e-66 257.7 232 54.3
SMO331G0026 Selaginella moellendorffii HOM05D003642 ORTHO05D004460 3.3e-66 256.5 237 54.0
arahy.Tifrunner.gnm1.ann1.H74NZW Arachis hypogaea HOM05D003642 ORTHO05D004460 1.3e-65 254.6 235 55.3
Gorai.004G009500 Gossypium raimondii HOM05D003642 ORTHO05D004460 2.8e-65 253.4 232 53.4
Mapoly0001s0264 Marchantia polymorpha HOM05D003642 ORTHO05D004460 1.4e-64 251.1 237 52.7
CSS0027733 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 3.1e-64 250.0 393 40.2
CSS0037628 Camellia sinensis var. sinensis HOM05D003642 ORTHO05D004460 3.1e-64 250.0 393 40.2
Rhsim13G0110200 Rhododendron simsii HOM05D003642 ORTHO05D004460 3.4e-63 246.5 240 52.5
arahy.Tifrunner.gnm1.ann1.U1TIAA Arachis hypogaea HOM05D003642 ORTHO05D004460 2.5e-61 240.4 205 58.5
TWI75G1212 Tripterygium wilfordii HOM05D003642 ORTHO05D004460 2.1e-60 237.3 232 50.9
unitig_746.g26606 Utricularia gibba HOM05D003642 ORTHO05D004460 2.7e-60 236.9 244 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2668 Anthoceros agrestis HOM05D003642 ORTHO05D004460 7.9e-60 235.3 236 50.4
arahy.Tifrunner.gnm1.ann1.SR1X9W Arachis hypogaea HOM05D003642 ORTHO05D004460 2.3e-59 233.8 204 57.8
CiPaw.14G101500 Carya illinoinensis HOM05D003642 ORTHO05D004460 1.4e-56 224.6 232 51.7
unitig_899.g15371 Utricularia gibba HOM05D003642 ORTHO05D004460 1.4e-56 224.6 238 50.4
Pp3c14_26500 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.0e-51 208.4 251 47.0
arahy.Tifrunner.gnm1.ann1.GDD8RQ Arachis hypogaea HOM05D003642 ORTHO05D004460 4.4e-50 203.0 204 51.5
Mapoly0032s0065 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.2e-46 190.7 252 44.0
Mapoly0028s0144 Marchantia polymorpha HOM05D003642 ORTHO05D004460 2.9e-46 190.3 250 42.8
FAN11G1888 Fragaria x ananassa HOM05D003642 ORTHO05D004460 5.0e-46 189.5 377 37.7
TAR369G0931 Trochodendron aralioides HOM05D003642 ORTHO05D004460 2.5e-45 187.2 151 57.6
PSO339G5820 Papaver somniferum HOM05D003642 ORTHO05D004460 7.7e-39 165.6 136 59.6
Lj1A242T18 Lonicera japonica HOM05D003642 ORTHO05D004460 8.6e-38 162.2 285 38.2
arahy.Tifrunner.gnm1.ann1.52W323 Arachis hypogaea HOM05D003642 ORTHO05D004460 8.0e-36 155.6 149 52.3
CBR_g16841 Chara braunii HOM05D003642 ORTHO05D004460 1.0e-35 155.2 232 41.8
GSVIVG01036150001 Vitis vinifera HOM05D003642 ORTHO05D004460 3.0e-35 153.7 236 39.0
Cpa.g.sc32.97 Carica papaya HOM05D003642 ORTHO05D004460 1.0e-30 138.7 236 38.6
Gohir.D08G015066 Gossypium hirsutum HOM05D003642 ORTHO05D004460 1.1e-29 135.2 108 56.5
CDE06G0775 Ceratophyllum demersum HOM05D003642 ORTHO05D004460 5.6e-29 132.9 98 61.2
unitig_899.g15372 Utricularia gibba HOM05D003642 ORTHO05D004460 9.5e-29 132.1 162 46.9
Pp3c15_22480 Physcomitrium patens HOM05D003642 ORTHO05D004460 1.8e-24 117.9 124 52.4
Lj2C980T3 Lonicera japonica HOM05D003642 ORTHO05D004460 3.6e-20 103.6 74 64.9
Pp3c6_3550 Physcomitrium patens HOM05D003642 ORTHO05D004460 5.8e-18 96.3 195 34.4
CDE08G1668 Ceratophyllum demersum HOM05D003642 ORTHO05D003759 9.8e-18 95.5 118 44.9
CAN.G225.12 Capsicum annuum HOM05D003642 ORTHO05D004460 3.3e-13 80.5 144 34.7
Pp3c15_12330 Physcomitrium patens HOM05D003642 ORTHO05D004460 7.3e-13 79.3 88 45.5
CBR_g39359 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-08 64.7 219 31.5
CBR_g4114 Chara braunii HOM05D000019 ORTHO05D000353 2.1e-07 61.2 73 43.8
Lalb_Chr19g0136571 Lupinus albus HOM05D003642 ORTHO05D004460 7.8e-07 59.3 52 50.0
CBR_g49425 Chara braunii HOM05D000019 ORTHO05D000002 8.6e-06 55.8 83 39.8


User provided reference genes

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