Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb196600 Zea mays HOM05D007231 ORTHO05D009024 5.3e-139 497.7 248 100.0
Zm00001eb342980 Zea mays HOM05D007231 ORTHO05D009024 5.2e-110 401.4 244 81.1
Os12g0144000 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 2.0e-109 399.4 246 80.5
Os11g0147100 Oryza sativa ssp. japonica HOM05D007231 ORTHO05D009024 1.7e-105 386.3 244 79.1
Nn1g02166 Nelumbo nucifera HOM05D007231 ORTHO05D009024 3.6e-71 272.3 246 56.9
TAR365G1202 Trochodendron aralioides HOM05D007231 ORTHO05D009024 8.1e-71 271.2 247 54.3
TAR636G3122 Trochodendron aralioides HOM05D007231 ORTHO05D009024 1.8e-70 270.0 247 53.8
CAN.G609.11 Capsicum annuum HOM05D007231 ORTHO05D009024 3.1e-70 269.2 248 56.5
MSTRG.18222 Avicennia marina HOM05D007231 ORTHO05D009024 4.4e-69 265.4 248 54.8
Sopen09g026640 Solanum pennellii HOM05D007231 ORTHO05D009024 7.5e-69 264.6 249 55.4
SalBow4G2275 Salvia bowleyana HOM05D007231 ORTHO05D009024 1.3e-68 263.8 248 54.4
CiPaw.08G104200 Carya illinoinensis HOM05D007231 ORTHO05D009024 3.7e-68 262.3 248 52.8
Solyc09g064930.3 Solanum lycopersicum HOM05D007231 ORTHO05D009024 3.7e-68 262.3 249 54.6
Nitab4.5_0001028g0140 Nicotiana tabacum HOM05D007231 ORTHO05D009024 4.9e-68 261.9 250 55.2
MBI19_g24716_MAGBIO Magnolia biondii HOM05D007231 ORTHO05D009024 8.3e-68 261.2 246 52.8
Actinidia00741 Actinidia chinensis HOM05D007231 ORTHO05D009024 1.9e-67 260.0 248 53.6
CDE04G0796 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 3.2e-67 259.2 243 52.3
THA.LOC104801225 Tarenaya hassleriana HOM05D007231 ORTHO05D009024 1.2e-66 257.3 248 51.6
PSO210G0158 Papaver somniferum HOM05D007231 ORTHO05D009024 1.6e-66 256.9 249 53.4
COL.COLO4_09128 Corchorus olitorius HOM05D007231 ORTHO05D009024 2.7e-66 256.1 249 52.2
Actinidia09146 Actinidia chinensis HOM05D007231 ORTHO05D009024 3.5e-66 255.8 249 54.2
Rhsim13G0023500 Rhododendron simsii HOM05D007231 ORTHO05D009024 6.0e-66 255.0 248 52.8
Ciclev10021857m.g Citrus clementina HOM05D007231 ORTHO05D009024 7.8e-66 254.6 248 52.0
Migut.D00275 Erythranthe guttata HOM05D007231 ORTHO05D009024 1.0e-65 254.2 249 51.8
Nitab4.5_0002386g0100 Nicotiana tabacum HOM05D002055 ORTHO05D009024 1.0e-65 254.2 250 53.6
Peaxi162Scf00570g00058 Petunia axillaris HOM05D007231 ORTHO05D009024 1.3e-65 253.8 248 52.8
Manes.05G074400 Manihot esculenta HOM05D007231 ORTHO05D009024 2.3e-65 253.1 248 53.6
QL12p022281 Quercus lobata HOM05D007231 ORTHO05D009024 3.9e-65 252.3 245 51.0
Cc01_g19680 Coffea canephora HOM05D007231 ORTHO05D009024 6.6e-65 251.5 247 50.6
Duzib211G0396 Durio zibethinus HOM05D007231 ORTHO05D009024 6.6e-65 251.5 249 51.8
AL1G12740 Arabidopsis lyrata HOM05D007231 ORTHO05D009024 8.6e-65 251.1 249 53.0
MD11G1288600 Malus domestica HOM05D007231 ORTHO05D009024 8.6e-65 251.1 250 51.6
GSVIVG01011110001 Vitis vinifera HOM05D007231 ORTHO05D009024 8.6e-65 251.1 246 52.0
Ca_09766_v3 Cicer arietinum L. HOM05D002055 ORTHO05D002120 1.1e-64 250.8 231 53.7
Thecc.01G282400 Theobroma cacao HOM05D007231 ORTHO05D009024 1.1e-64 250.8 249 52.2
Lj5g0005680 Lotus japonicus HOM05D007231 ORTHO05D009024 1.5e-64 250.4 244 52.9
Atru.chr5.1389 Acer truncatum HOM05D007231 ORTHO05D009024 2.5e-64 249.6 248 51.6
CANSAT25G1925 Cannabis sativa HOM05D007231 ORTHO05D009024 2.5e-64 249.6 249 53.4
vmacro02556 Vaccinium macrocarpon HOM05D007231 ORTHO05D009024 2.5e-64 249.6 248 52.8
Cfa006118 Carpinus fangiana HOM05D007231 ORTHO05D009024 4.3e-64 248.8 252 51.6
Prupe.8G243400 Prunus persica HOM05D007231 ORTHO05D009024 4.3e-64 248.8 248 51.2
RcHm_v2.0_Chr6g0291381 Rosa chinensis HOM05D007231 ORTHO05D009024 4.3e-64 248.8 251 51.4
SGA_v2.0_scaffold11G05804 Striga asiatica HOM05D002055 ORTHO05D002120 5.6e-64 248.4 259 51.7
Gohir.A08G069100 Gossypium hirsutum HOM05D007231 ORTHO05D009024 9.5e-64 247.7 248 51.6
HanXRQChr01g0002311 Helianthus annuus HOM05D007231 ORTHO05D009024 9.5e-64 247.7 232 53.9
Gohir.D08G077400 Gossypium hirsutum HOM05D007231 ORTHO05D009024 1.2e-63 247.3 249 51.4
Lalb_Chr06g0163091 Lupinus albus HOM05D007231 ORTHO05D009024 1.2e-63 247.3 242 50.8
Lalb_Chr02g0142831 Lupinus albus HOM05D007231 ORTHO05D009024 1.6e-63 246.9 242 51.2
AT1G03250 Arabidopsis thaliana HOM05D007231 ORTHO05D009024 2.1e-63 246.5 249 52.2
Gorai.004G082300 Gossypium raimondii HOM05D007231 ORTHO05D009024 2.8e-63 246.1 249 51.4
Cpa.g.sc64.168 Carica papaya HOM05D007231 ORTHO05D009024 3.6e-63 245.7 247 51.0
SGA_v2.0_scaffold1G00456 Striga asiatica HOM05D007231 ORTHO05D009024 4.7e-63 245.4 249 52.2
BcaC05g24637 Brassica carinata HOM05D007231 ORTHO05D009024 6.2e-63 245.0 248 50.4
Glyma.10G025400 Glycine max HOM05D007231 ORTHO05D009024 6.2e-63 245.0 243 51.0
Dinv11248 Davidia involucrata HOM05D007231 ORTHO05D009024 8.1e-63 244.6 248 51.6
Sp1g02240 Schrenkiella parvula HOM05D007231 ORTHO05D009024 1.1e-62 244.2 250 50.8
Aa31LG1G9290 Aethionema arabicum HOM05D007231 ORTHO05D009024 1.8e-62 243.4 249 50.2
arahy.Tifrunner.gnm1.ann1.9UA39Y Arachis hypogaea HOM05D007231 ORTHO05D009024 1.8e-62 243.4 249 50.6
arahy.Tifrunner.gnm1.ann1.LJDI86 Arachis hypogaea HOM05D007231 ORTHO05D009024 1.8e-62 243.4 249 50.6
CARHR002550 Cardamine hirsuta HOM05D007231 ORTHO05D009024 2.4e-62 243.0 250 50.4
BcaC05g24551 Brassica carinata HOM05D007231 ORTHO05D009024 3.1e-62 242.7 248 50.4
Psat6g125920 Pisum sativum HOM05D007231 ORTHO05D009024 3.1e-62 242.7 233 51.9
A10p01800 Brassica napus HOM05D007231 ORTHO05D009024 4.0e-62 242.3 248 50.0
Carub.0001s0236 Capsella rubella HOM05D007231 ORTHO05D009024 5.2e-62 241.9 249 51.0
FvH4_2g23810 Fragaria vesca HOM05D007231 ORTHO05D009024 6.8e-62 241.5 252 51.2
Aqoxy2G03271 Aquilegia oxysepala HOM05D007231 ORTHO05D009024 8.9e-62 241.1 232 53.0
BraA10t42455Z Brassica rapa HOM05D007231 ORTHO05D009024 8.9e-62 241.1 248 50.0
Oeu015959.1 Olea europaea HOM05D007231 ORTHO05D009024 1.2e-61 240.7 224 53.6
Dinv32951 Davidia involucrata HOM05D007231 ORTHO05D009024 2.0e-61 240.0 252 50.8
HanXRQChr11g0327631 Helianthus annuus HOM05D007231 ORTHO05D009024 2.0e-61 240.0 247 51.0
ECA248G0248 Erigeron canadensis HOM05D002055 ORTHO05D002120 3.4e-61 239.2 229 53.3
Thhalv10008549m.g Eutrema salsugineum HOM05D007231 ORTHO05D009024 4.4e-61 238.8 254 49.6
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 4.4e-61 238.8 224 52.2
Potri.019G046400 Populus trichocarpa HOM05D007231 ORTHO05D009024 7.6e-61 238.0 246 50.4
Sabra19G0055900 Salix brachista HOM05D007231 ORTHO05D009024 7.6e-61 238.0 246 50.0
C05p01780 Brassica napus HOM05D007231 ORTHO05D009024 9.9e-61 237.7 224 52.2
Lsat_1_v5_gn_5_190100 Lactuca sativa HOM05D007231 ORTHO05D009024 2.2e-60 236.5 248 50.8
FAN27G1680 Fragaria x ananassa HOM05D007231 ORTHO05D009024 6.4e-60 235.0 259 50.2
BolC5t28956H Brassica oleracea HOM05D007231 ORTHO05D009024 8.4e-60 234.6 255 48.2
Oeu022878.1 Olea europaea HOM05D007231 ORTHO05D009024 1.4e-59 233.8 224 52.2
HPP92_016066 Vanilla planifolia HOM05D006695 ORTHO05D008239 1.4e-59 233.8 205 58.0
Medtr1g072510 Medicago truncatula HOM05D007231 ORTHO05D009024 2.4e-59 233.0 232 50.4
AUR62036799 Chenopodium quinoa HOM05D007231 ORTHO05D009024 4.2e-59 232.3 276 44.6
MELO3C015851.2 Cucumis melo HOM05D007231 ORTHO05D009024 4.2e-59 232.3 247 47.4
Phvul.007G170300 Phaseolus vulgaris HOM05D007231 ORTHO05D009024 4.2e-59 232.3 243 49.0
CsaV3_7G028660 Cucumis sativus L. HOM05D007231 ORTHO05D009024 7.1e-59 231.5 248 48.4
Lj2C1175G18 Lonicera japonica HOM05D007231 ORTHO05D009024 9.2e-59 231.1 312 43.6
unitig_0.g109 Utricularia gibba HOM05D007231 ORTHO05D009024 9.2e-59 231.1 210 52.4
TWI14G0923 Tripterygium wilfordii HOM05D002055 ORTHO05D002120 1.2e-58 230.7 200 57.5
EL10Ac7g17220 Beta vulgaris HOM05D007231 ORTHO05D009024 1.6e-58 230.3 300 43.7
Sed0024964 Sechium edule HOM05D002055 ORTHO05D002120 1.6e-58 230.3 227 50.7
Eucgr.K03384 Eucalyptus grandis HOM05D007231 ORTHO05D009024 4.6e-58 228.8 226 53.1
Hund05352 Selenicereus undatus HOM05D007231 ORTHO05D009024 5.1e-57 225.3 248 49.6
ATR0626G005 Amborella trichopoda HOM05D007231 ORTHO05D009024 2.5e-56 223.0 221 48.9
FAN20G2044 Fragaria x ananassa HOM05D007231 ORTHO05D009024 1.5e-53 213.8 299 43.5
ClCG09G006940 Citrullus lanatus HOM05D002055 ORTHO05D002120 4.4e-53 212.2 199 52.8
CSS0040014 Camellia sinensis var. sinensis HOM05D007231 ORTHO05D009024 1.3e-49 200.7 187 54.0
PGR044G2216 Punica granatum HOM05D007231 ORTHO05D009024 1.7e-49 200.3 185 54.1
Ciclev10022442m.g Citrus clementina HOM05D007231 ORTHO05D009024 9.6e-48 194.5 184 51.1
AUR62039907 Chenopodium quinoa HOM05D007231 ORTHO05D009024 4.0e-46 189.1 152 56.6
Sc05g0004910 Simmondsia chinensis HOM05D007231 ORTHO05D009024 3.4e-45 186.0 165 54.5
Duzib138G1636 Durio zibethinus HOM05D007231 ORTHO05D009024 1.3e-44 184.1 247 42.5
SEGI_15193 Sequoiadendron giganteum HOM05D007231 ORTHO05D009024 1.2e-34 151.0 221 37.1
Mapoly0057s0044 Marchantia polymorpha HOM05D007231 ORTHO05D009024 4.0e-30 136.0 182 39.0
SMO137G0298 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 2.5e-24 116.7 197 37.6
AagrBONN_evm.TU.Sc2ySwM_117.667 Anthoceros agrestis HOM05D007231 ORTHO05D009024 3.3e-24 116.3 213 32.4
SMO170G0043 Selaginella moellendorffii HOM05D007231 ORTHO05D009024 4.3e-24 115.9 206 37.4
Pp3c4_28170 Physcomitrium patens HOM05D007231 ORTHO05D009024 5.9e-21 105.5 229 31.4
TPR.G19967 Trifolium pratense HOM05D007231 ORTHO05D009024 1.7e-20 104.0 118 44.9
MCO13G326 Micromonas commoda HOM05D007231 ORTHO05D009024 5.0e-20 102.4 190 35.3
Cre01.g040100 Chlamydomonas reinhardtii HOM05D007231 ORTHO05D009024 7.9e-18 95.1 189 32.8
CDE02G1070 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 2.7e-10 70.1 125 35.2
TPR.G24733 Trifolium pratense HOM05D007231 ORTHO05D009024 4.7e-10 69.3 54 63.0
BcaC05g24635 Brassica carinata HOM05D007231 ORTHO05D009024 2.3e-09 67.0 68 50.0
CDE02G2493 Ceratophyllum demersum HOM05D007231 ORTHO05D009024 3.9e-09 66.2 68 45.6
Cc01_g19320 Coffea canephora HOM05D007231 ORTHO05D009024 2.2e-07 60.5 135 31.9


User provided reference genes

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