Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb196310 Zea mays HOM05D006819 ORTHO05D008763 2.2e-242 842.8 821 100.0
ClCG07G012740 Citrullus lanatus HOM05D006819 ORTHO05D008763 2.3e-29 135.2 150 50.0
MELO3C017894.2 Cucumis melo HOM05D006819 ORTHO05D008763 3.0e-29 134.8 150 49.3
Sed0026792 Sechium edule HOM05D006819 ORTHO05D008763 6.7e-29 133.7 249 37.3
CSS0002572 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 5.6e-28 130.6 175 42.9
COL.COLO4_12924 Corchorus olitorius HOM05D006819 ORTHO05D008763 9.6e-28 129.8 246 34.6
CSS0026240 Camellia sinensis var. sinensis HOM05D006819 ORTHO05D008763 1.6e-27 129.0 175 42.9
PGR031G3623 Punica granatum HOM05D006819 ORTHO05D008763 3.7e-27 127.9 257 35.8
Nn8g39431 Nelumbo nucifera HOM05D006819 ORTHO05D008763 4.8e-27 127.5 154 46.8
Dinv30584 Davidia involucrata HOM05D006819 ORTHO05D008763 6.2e-27 127.1 249 35.7
Aqoxy7G03720 Aquilegia oxysepala HOM05D006819 ORTHO05D008763 1.1e-26 126.3 178 41.0
TWI18G0691 Tripterygium wilfordii HOM05D006819 ORTHO05D008763 1.4e-26 125.9 171 40.4
MD17G1208200 Malus domestica HOM05D006819 ORTHO05D008763 2.4e-26 125.2 178 43.3
Rhsim08G0214900 Rhododendron simsii HOM05D006819 ORTHO05D008763 2.4e-26 125.2 252 36.5
Rhsim04G0187400 Rhododendron simsii HOM05D006819 ORTHO05D008763 3.1e-26 124.8 252 36.9
Cpa.g.sc10.236 Carica papaya HOM05D006819 ORTHO05D008763 5.3e-26 124.0 250 35.6
CiPaw.02G155800 Carya illinoinensis HOM05D006819 ORTHO05D008763 5.3e-26 124.0 174 43.7
arahy.Tifrunner.gnm1.ann1.6R2JPG Arachis hypogaea HOM05D006819 ORTHO05D008763 6.9e-26 123.6 258 35.7
arahy.Tifrunner.gnm1.ann1.GQ0MHW Arachis hypogaea HOM05D006819 ORTHO05D008763 6.9e-26 123.6 258 35.7
Cfa001984 Carpinus fangiana HOM05D006819 ORTHO05D008763 6.9e-26 123.6 248 38.7
Ciclev10024942m.g Citrus clementina HOM05D006819 ORTHO05D008763 6.9e-26 123.6 252 34.1
Prupe.3G082900 Prunus persica HOM05D006819 ORTHO05D008763 6.9e-26 123.6 252 37.3
arahy.Tifrunner.gnm1.ann1.6PYW3K Arachis hypogaea HOM05D006819 ORTHO05D008763 2.6e-25 121.7 256 37.9
arahy.Tifrunner.gnm1.ann1.UYKR6J Arachis hypogaea HOM05D006819 ORTHO05D008763 2.6e-25 121.7 256 37.9
AUR62016357 Chenopodium quinoa HOM05D006819 ORTHO05D008763 2.6e-25 121.7 149 48.3
Eucgr.J03057 Eucalyptus grandis HOM05D006819 ORTHO05D008763 3.4e-25 121.3 255 35.3
CsaV3_4G001460 Cucumis sativus L. HOM05D006819 ORTHO05D008763 5.8e-25 120.6 254 36.2
RcHm_v2.0_Chr2g0136061 Rosa chinensis HOM05D006819 ORTHO05D008763 5.8e-25 120.6 254 36.6
TAR383G0223 Trochodendron aralioides HOM05D006819 ORTHO05D008763 5.8e-25 120.6 154 44.2
HanXRQChr09g0274981 Helianthus annuus HOM05D006819 ORTHO05D008763 9.9e-25 119.8 251 35.5
FAN05G3290 Fragaria x ananassa HOM05D006819 ORTHO05D008763 1.3e-24 119.4 249 35.7
FAN09G2760 Fragaria x ananassa HOM05D006819 ORTHO05D008763 1.3e-24 119.4 252 34.9
Actinidia01760 Actinidia chinensis HOM05D006819 ORTHO05D008763 1.7e-24 119.0 261 34.1
Haze_16531 Corylus avellana HOM05D006819 ORTHO05D008763 2.2e-24 118.6 251 38.2
FvH4_6g30030 Fragaria vesca HOM05D006819 ORTHO05D008763 4.9e-24 117.5 252 34.9
FAN14G2986 Fragaria x ananassa HOM05D006819 ORTHO05D008763 4.9e-24 117.5 252 34.9
Sp1g39170 Schrenkiella parvula HOM05D006819 ORTHO05D008763 6.4e-24 117.1 252 35.3
Lj3g0013909 Lotus japonicus HOM05D006819 ORTHO05D008763 8.4e-24 116.7 248 35.5
QL05p028543 Quercus lobata HOM05D006819 ORTHO05D008763 8.4e-24 116.7 248 35.9
THA.LOC104815536 Tarenaya hassleriana HOM05D006819 ORTHO05D008763 8.4e-24 116.7 251 36.3
C06p08050 Brassica napus HOM05D006819 ORTHO05D008763 2.4e-23 115.2 246 38.2
BolC6t35888H Brassica oleracea HOM05D006819 ORTHO05D008763 2.4e-23 115.2 246 38.2
Carub.0001s4161 Capsella rubella HOM05D006819 ORTHO05D008763 2.4e-23 115.2 246 34.6
AUR62011538 Chenopodium quinoa HOM05D006819 ORTHO05D008763 3.2e-23 114.8 153 45.1
AL1G60900 Arabidopsis lyrata HOM05D006819 ORTHO05D008763 4.2e-23 114.4 244 35.7
BcaC08g43437 Brassica carinata HOM05D006819 ORTHO05D008763 4.2e-23 114.4 246 38.2
AT1G52620 Arabidopsis thaliana HOM05D006819 ORTHO05D008763 7.1e-23 113.6 248 34.3
BraA06t23391Z Brassica rapa HOM05D006819 ORTHO05D008763 1.2e-22 112.8 246 37.8
Potri.001G139200 Populus trichocarpa HOM05D006819 ORTHO05D008763 1.2e-22 112.8 239 34.3
Hund00538 Selenicereus undatus HOM05D006819 ORTHO05D008763 1.2e-22 112.8 248 35.1
A06p01730 Brassica napus HOM05D006819 ORTHO05D008763 1.6e-22 112.5 246 37.8
DCAR_025499 Daucus carota HOM05D006819 ORTHO05D008763 2.1e-22 112.1 151 41.7
Sc10g0005770 Simmondsia chinensis HOM05D006819 ORTHO05D008763 2.7e-22 111.7 248 33.9
Migut.D01062 Erythranthe guttata HOM05D006819 ORTHO05D008763 3.5e-22 111.3 152 44.1
Duzib235G1541 Durio zibethinus HOM05D006819 ORTHO05D008763 4.6e-22 110.9 249 33.7
Thecc.06G069300 Theobroma cacao HOM05D006819 ORTHO05D008763 7.9e-22 110.2 122 44.3
vmacro19477 Vaccinium macrocarpon HOM05D006819 ORTHO05D008763 7.9e-22 110.2 257 33.9
SGA_v2.0_scaffold16G07604 Striga asiatica HOM05D006819 ORTHO05D008763 1.3e-21 109.4 252 34.9
Atru.chr1.3043 Acer truncatum HOM05D006819 ORTHO05D008763 3.9e-21 107.8 249 34.5
CDE02G2030 Ceratophyllum demersum HOM05D006819 ORTHO05D008763 3.9e-21 107.8 149 42.3
EL10Ac9g21918 Beta vulgaris HOM05D006819 ORTHO05D008763 5.1e-21 107.5 247 34.4
Lalb_Chr22g0350931 Lupinus albus HOM05D006819 ORTHO05D008763 8.7e-21 106.7 257 34.2
Cc04_g04190 Coffea canephora HOM05D006819 ORTHO05D008763 1.5e-20 105.9 246 33.3
Phvul.005G176600 Phaseolus vulgaris HOM05D006819 ORTHO05D008763 1.9e-20 105.5 252 33.3
CAN.G407.98 Capsicum annuum HOM05D006819 ORTHO05D008763 2.5e-20 105.1 152 42.8
PSO210G0638 Papaver somniferum HOM05D006819 ORTHO05D008763 1.3e-19 102.8 123 39.0
Aa31LG10G2400 Aethionema arabicum HOM05D006819 ORTHO05D008763 1.6e-19 102.4 246 34.1
Solyc03g116560.1 Solanum lycopersicum HOM05D006819 ORTHO05D008763 1.6e-19 102.4 152 42.1
Sabra01G0108200 Salix brachista HOM05D006819 ORTHO05D008763 2.1e-19 102.1 233 33.5
Sopen03g035470 Solanum pennellii HOM05D006819 ORTHO05D008763 2.1e-19 102.1 152 42.1
Lsat_1_v5_gn_4_106101 Lactuca sativa HOM05D006819 ORTHO05D008763 2.8e-19 101.7 254 34.6
Nitab4.5_0001764g0060 Nicotiana tabacum HOM05D006819 ORTHO05D008763 2.8e-19 101.7 153 41.2
Nitab4.5_0010254g0010 Nicotiana tabacum HOM05D006819 ORTHO05D008763 3.7e-19 101.3 153 41.2
Lj5C69T16 Lonicera japonica HOM05D006819 ORTHO05D008763 4.8e-19 100.9 256 31.2
ATR0322G052 Amborella trichopoda HOM05D006819 ORTHO05D008763 8.2e-19 100.1 127 45.7
Oeu015243.5 Olea europaea HOM05D006819 ORTHO05D008763 1.1e-18 99.8 110 47.3
SalBow2G2822 Salvia bowleyana HOM05D006819 ORTHO05D008763 1.4e-18 99.4 257 33.5
GSVIVG01017297001 Vitis vinifera HOM05D006819 ORTHO05D008763 1.8e-18 99.0 222 32.4
SalBow2G3436 Salvia bowleyana HOM05D006819 ORTHO05D008763 9.0e-18 96.7 256 33.2
SalBow2G3112 Salvia bowleyana HOM05D006819 ORTHO05D008763 1.5e-17 95.9 140 36.4
Medtr2g103520 Medicago truncatula HOM05D006819 ORTHO05D008763 2.0e-17 95.5 179 36.9
HPP92_002305 Vanilla planifolia HOM05D008254 ORTHO05D010423 2.6e-17 95.1 219 35.6
PGSC0003DMG400000632 Solanum tuberosum HOM05D006819 ORTHO05D008763 5.8e-17 94.0 258 32.6
VMungo1080G1389 Vigna mungo HOM05D006819 ORTHO05D008763 7.6e-17 93.6 253 30.8
Glyma.13G364500 Glycine max HOM05D006819 ORTHO05D008763 1.0e-16 93.2 259 30.5
PSO210G6668 Papaver somniferum HOM05D006819 ORTHO05D008763 1.0e-16 93.2 153 39.9
SHI20606 Sapria himalayana HOM05D006819 ORTHO05D008763 1.3e-16 92.8 231 32.0
Glyma.15G009300 Glycine max HOM05D006819 ORTHO05D008763 2.9e-16 91.7 257 30.7
Psat0s2501g0040 Pisum sativum HOM05D006819 ORTHO05D008763 2.5e-15 88.6 151 31.8
Psat0s2501g0080 Pisum sativum HOM05D006819 ORTHO05D008763 2.5e-15 88.6 151 31.8
TPR.G37179 Trifolium pratense HOM05D006819 ORTHO05D008763 7.1e-15 87.0 256 32.8
Gohir.A10G062900 Gossypium hirsutum HOM05D006819 ORTHO05D008763 9.3e-15 86.7 132 33.3
Peaxi162Scf00332g00075 Petunia axillaris HOM05D006819 ORTHO05D008763 1.2e-14 86.3 135 33.3
Ah.01g020740 Amaranthus hybridus HOM05D006819 ORTHO05D008763 1.6e-14 85.9 133 30.8
Psat5g301600 Pisum sativum HOM05D006819 ORTHO05D008763 2.1e-14 85.5 123 33.3
CARHR042740 Cardamine hirsuta HOM05D006819 ORTHO05D008763 2.7e-14 85.1 225 32.4
Manes.11G054300 Manihot esculenta HOM05D006819 ORTHO05D008763 2.7e-14 85.1 212 31.1
SEGI_26115 Sequoiadendron giganteum HOM05D006819 ORTHO05D008763 4.6e-14 84.3 167 37.1
ECA232G0226 Erigeron canadensis HOM05D006819 ORTHO05D008763 6.0e-14 84.0 255 31.8
Ca_20110_v3 Cicer arietinum L. HOM05D006819 ORTHO05D008763 1.3e-13 82.8 108 42.6
Atru.chr4.3032 Acer truncatum HOM05D006819 ORTHO05D008763 3.0e-13 81.6 107 43.9
Actinidia15785 Actinidia chinensis HOM05D006819 ORTHO05D008763 6.7e-13 80.5 105 36.2
Thhalv10011244m.g Eutrema salsugineum HOM05D006819 ORTHO05D008763 8.7e-13 80.1 223 31.8
Gorai.011G068600 Gossypium raimondii HOM05D006819 ORTHO05D008763 1.5e-12 79.3 220 30.5
FAN02G4037 Fragaria x ananassa HOM05D006819 ORTHO05D008763 4.3e-12 77.8 57 63.2
Gohir.D10G064600 Gossypium hirsutum HOM05D006819 ORTHO05D008763 9.7e-12 76.6 220 30.0
Oeu026322.1 Olea europaea HOM05D006819 ORTHO05D008763 5.9e-09 67.4 107 37.4
Manes.06G053800 Manihot esculenta HOM05D000001 ORTHO05D000003 7.2e-07 60.5 147 27.2
CiPaw.05G196700 Carya illinoinensis HOM05D006156 ORTHO05D007699 6.1e-06 57.4 155 26.5
HPP92_001276 Vanilla planifolia HOM05D002825 ORTHO05D003824 6.1e-06 57.4 185 27.0


User provided reference genes

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