Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb196250 Zea mays HOM05D017284 ORTHO05D001524 1.1e-69 266.5 132 100.0
Zm00001eb022300 Zea mays HOM05D017284 ORTHO05D001524 1.2e-68 263.1 132 98.5
Zm00001eb397420 Zea mays HOM05D017284 ORTHO05D001524 1.2e-68 263.1 132 98.5
Zm00001eb408930 Zea mays HOM05D017284 ORTHO05D001524 4.8e-54 214.5 138 83.3
Zm00001eb324490 Zea mays HOM05D001665 ORTHO05D001524 1.6e-41 172.9 119 78.2
Zm00001eb223370 Zea mays HOM05D017284 ORTHO05D001524 1.3e-35 153.3 90 86.7
Zm00001eb021160 Zea mays HOM05D017284 ORTHO05D001524 5.0e-27 124.8 121 60.3
Zm00001eb165540 Zea mays HOM05D017284 ORTHO05D001524 5.0e-27 124.8 121 60.3
Zm00001eb107050 Zea mays HOM05D001665 ORTHO05D001524 2.3e-24 115.9 127 62.2
Zm00001eb416010 Zea mays HOM05D017284 ORTHO05D007510 4.7e-17 91.7 62 74.2
ATR0693G398 Amborella trichopoda HOM05D001665 ORTHO05D001524 7.2e-10 67.8 59 61.0
Dinv01396 Davidia involucrata HOM05D001665 ORTHO05D001524 6.1e-09 64.7 62 53.2
COL.COLO4_35420 Corchorus olitorius HOM05D001665 ORTHO05D001524 6.7e-08 61.2 52 63.5
Actinidia01919 Actinidia chinensis HOM05D001665 ORTHO05D001524 8.8e-08 60.8 94 42.6
CsaV3_7G004240 Cucumis sativus L. HOM05D001665 ORTHO05D001524 2.0e-07 59.7 69 50.7
Sed0012012 Sechium edule HOM05D001665 ORTHO05D001524 2.0e-07 59.7 69 50.7
Thecc.02G174500 Theobroma cacao HOM05D001665 ORTHO05D001524 2.0e-07 59.7 52 61.5
CSS0004255 Camellia sinensis var. sinensis HOM05D001665 ORTHO05D001524 2.6e-07 59.3 72 45.8
CSS0049816 Camellia sinensis var. sinensis HOM05D001665 ORTHO05D001524 2.6e-07 59.3 72 45.8
ClCG02G001210 Citrullus lanatus HOM05D001665 ORTHO05D001524 2.6e-07 59.3 69 50.7
Lj1A733G59 Lonicera japonica HOM05D001665 ORTHO05D001524 2.6e-07 59.3 58 55.2
Psat7g111680 Pisum sativum HOM05D001665 ORTHO05D001524 2.6e-07 59.3 77 46.8
MBI02_g46245_MAGBIO Magnolia biondii HOM05D001665 ORTHO05D001524 3.3e-07 58.9 94 45.7
Peaxi162Scf00608g00089 Petunia axillaris HOM05D001665 ORTHO05D001524 3.3e-07 58.9 58 55.2
Ciclev10017068m.g Citrus clementina HOM05D001665 ORTHO05D001524 4.4e-07 58.5 53 58.5
Manes.13G149700 Manihot esculenta HOM05D001665 ORTHO05D001524 4.4e-07 58.5 62 54.8
Potri.004G037200 Populus trichocarpa HOM05D001665 ORTHO05D001524 4.4e-07 58.5 59 55.9
VMungo0251G3395 Vigna mungo HOM05D001665 ORTHO05D001524 4.4e-07 58.5 73 47.9
CiPaw.10G045000 Carya illinoinensis HOM05D001665 ORTHO05D001524 5.7e-07 58.2 80 47.5
Cpa.g.sc34.120 Carica papaya HOM05D001665 ORTHO05D001524 7.5e-07 57.8 51 62.7
Dinv39786 Davidia involucrata HOM05D001665 ORTHO05D001524 7.5e-07 57.8 57 52.6
Glyma.15G069700 Glycine max HOM05D001665 ORTHO05D001524 7.5e-07 57.8 65 53.8
Gohir.D13G065400 Gossypium hirsutum HOM05D001665 ORTHO05D001524 7.5e-07 57.8 46 63.0
Gorai.013G074600 Gossypium raimondii HOM05D001665 ORTHO05D001524 7.5e-07 57.8 46 63.0
Nn1g06686 Nelumbo nucifera HOM05D001665 ORTHO05D001524 7.5e-07 57.8 61 54.1
Phvul.002G224500 Phaseolus vulgaris HOM05D001665 ORTHO05D001524 7.5e-07 57.8 73 47.9
Potri.011G045900 Populus trichocarpa HOM05D001665 ORTHO05D001524 7.5e-07 57.8 60 55.0
PGSC0003DMG400021675 Solanum tuberosum HOM05D001665 ORTHO05D001524 7.5e-07 57.8 57 56.1
TAR627G0629 Trochodendron aralioides HOM05D001665 ORTHO05D001524 7.5e-07 57.8 61 54.1
HPP92_014058 Vanilla planifolia HOM05D001665 ORTHO05D001524 7.5e-07 57.8 54 59.3
EL10Ac8g20285 Beta vulgaris HOM05D001665 ORTHO05D001524 9.7e-07 57.4 66 47.0
Glyma.07G192400 Glycine max HOM05D001665 ORTHO05D001524 9.7e-07 57.4 69 49.3
Prupe.3G233800 Prunus persica HOM05D001665 ORTHO05D001524 9.7e-07 57.4 58 55.2
MELO3C002568.2 Cucumis melo HOM05D001665 ORTHO05D001524 1.3e-06 57.0 67 50.7
CsaV3_1G011900 Cucumis sativus L. HOM05D001665 ORTHO05D001524 1.3e-06 57.0 67 50.7
Gohir.A13G056500 Gossypium hirsutum HOM05D001665 ORTHO05D001524 1.3e-06 57.0 46 60.9
Ah.14g089120 Amaranthus hybridus HOM05D001665 ORTHO05D001524 1.7e-06 56.6 102 36.3
CiPaw.09G053300 Carya illinoinensis HOM05D001665 ORTHO05D001524 1.7e-06 56.6 65 50.8
Dinv23690 Davidia involucrata HOM05D001665 ORTHO05D001524 1.7e-06 56.6 59 52.5
Manes.12G088000 Manihot esculenta HOM05D001665 ORTHO05D001524 1.7e-06 56.6 51 62.7
Sabra19G0114500 Salix brachista HOM05D001665 ORTHO05D001524 1.7e-06 56.6 51 62.7
Sed0010317 Sechium edule HOM05D001665 ORTHO05D001524 1.7e-06 56.6 114 36.8
Hund23657 Selenicereus undatus HOM05D001665 ORTHO05D001524 1.7e-06 56.6 69 49.3
SEGI_06351 Sequoiadendron giganteum HOM05D001665 ORTHO05D001524 1.7e-06 56.6 51 60.8
Duzib160G0011 Durio zibethinus HOM05D001665 ORTHO05D001524 2.2e-06 56.2 51 60.8
Migut.B00767 Erythranthe guttata HOM05D001665 ORTHO05D001524 2.2e-06 56.2 60 53.3
Eucgr.K00945 Eucalyptus grandis HOM05D001665 ORTHO05D001524 2.2e-06 56.2 57 59.6
Glyma.13G244000 Glycine max HOM05D001665 ORTHO05D001524 2.2e-06 56.2 69 50.7
Glyma.16G002900 Glycine max HOM05D001665 ORTHO05D001524 2.2e-06 56.2 86 40.7
Medtr4g090440 Medicago truncatula HOM05D001665 ORTHO05D001524 2.2e-06 56.2 61 52.5
Actinidia05599 Actinidia chinensis HOM05D001665 ORTHO05D001524 2.8e-06 55.8 97 40.2
Gohir.A06G124400 Gossypium hirsutum HOM05D001665 ORTHO05D001524 2.8e-06 55.8 54 55.6
Lalb_Chr16g0383461 Lupinus albus HOM05D001665 ORTHO05D001524 2.8e-06 55.8 42 61.9
Rhsim13G0175800 Rhododendron simsii HOM05D001665 ORTHO05D001524 2.8e-06 55.8 95 40.0
SalBow1G4230 Salvia bowleyana HOM05D001665 ORTHO05D001524 2.8e-06 55.8 48 62.5
SGA_v2.0_scaffold100G29658 Striga asiatica HOM05D001665 ORTHO05D001524 2.8e-06 55.8 121 37.2
TAR626G1330 Trochodendron aralioides HOM05D001665 ORTHO05D001524 2.8e-06 55.8 57 54.4
TAR629G0497 Trochodendron aralioides HOM05D001665 ORTHO05D001524 2.8e-06 55.8 73 47.9
ClCG03G005650 Citrullus lanatus HOM05D001665 ORTHO05D001524 3.7e-06 55.5 102 38.2
Ciclev10017033m.g Citrus clementina HOM05D001665 ORTHO05D001524 3.7e-06 55.5 66 51.5
Cc00_g11500 Coffea canephora HOM05D001665 ORTHO05D001524 3.7e-06 55.5 79 43.0
Cc05_g06670 Coffea canephora HOM05D001665 ORTHO05D001524 3.7e-06 55.5 56 55.4
Duzib248G0998 Durio zibethinus HOM05D001665 ORTHO05D001524 3.7e-06 55.5 48 62.5
Lsat_1_v5_gn_4_70220 Lactuca sativa HOM05D001665 ORTHO05D001524 3.7e-06 55.5 42 64.3
Lj4g0012464 Lotus japonicus HOM05D001665 ORTHO05D001524 3.7e-06 55.5 61 52.5
Sc17g0006410 Simmondsia chinensis HOM05D001665 ORTHO05D001524 3.7e-06 55.5 54 59.3
HPP92_001819 Vanilla planifolia HOM05D001665 ORTHO05D001524 3.7e-06 55.5 115 40.0
Atru.chr6.3041 Acer truncatum HOM05D001665 ORTHO05D001524 4.8e-06 55.1 57 56.1
AUR62014759 Chenopodium quinoa HOM05D001665 ORTHO05D001524 4.8e-06 55.1 59 52.5
Dinv40520 Davidia involucrata HOM05D001665 ORTHO05D001524 4.8e-06 55.1 43 65.1
Glyma.12G166600 Glycine max HOM05D001665 ORTHO05D001524 4.8e-06 55.1 77 42.9
Nn1g03960 Nelumbo nucifera HOM05D001665 ORTHO05D001524 4.8e-06 55.1 56 53.6
Phvul.011G112900 Phaseolus vulgaris HOM05D001665 ORTHO05D001524 4.8e-06 55.1 71 45.1
Potri.019G103800 Populus trichocarpa HOM05D001665 ORTHO05D001524 4.8e-06 55.1 95 43.2
PGR142G4175 Punica granatum HOM05D001665 ORTHO05D001524 4.8e-06 55.1 57 56.1
Solyc10g008540.3 Solanum lycopersicum HOM05D001665 ORTHO05D001524 4.8e-06 55.1 58 53.4
Sopen03g002600 Solanum pennellii HOM05D001665 ORTHO05D001524 4.8e-06 55.1 99 38.4
TWI36G0444 Tripterygium wilfordii HOM05D001665 ORTHO05D001524 4.8e-06 55.1 52 55.8
TWI38G1840 Tripterygium wilfordii HOM05D001665 ORTHO05D001524 4.8e-06 55.1 52 57.7
Ah.09g235880 Amaranthus hybridus HOM05D001665 ORTHO05D001524 6.3e-06 54.7 60 45.0
Aqoxy1G02645 Aquilegia oxysepala HOM05D001665 ORTHO05D001524 6.3e-06 54.7 41 68.3
Hma1.2p1_0191F.1_g083400 Hydrangea macrophylla HOM05D001665 ORTHO05D001524 6.3e-06 54.7 72 47.2
Lalb_Chr18g0059821 Lupinus albus HOM05D001665 ORTHO05D001524 6.3e-06 54.7 79 43.0
TPR.G32405 Trifolium pratense HOM05D001665 ORTHO05D001524 6.3e-06 54.7 79 44.3
vmacro03830 Vaccinium macrocarpon HOM05D001665 ORTHO05D001524 6.3e-06 54.7 84 42.9
Ca_18510_v3 Cicer arietinum L. HOM05D001665 ORTHO05D001524 8.2e-06 54.3 77 44.2
COL.COLO4_31537 Corchorus olitorius HOM05D001665 ORTHO05D001524 8.2e-06 54.3 51 58.8
Duzib192G0368 Durio zibethinus HOM05D001665 ORTHO05D001524 8.2e-06 54.3 51 58.8
Gohir.A05G163300 Gossypium hirsutum HOM05D001665 ORTHO05D001524 8.2e-06 54.3 41 68.3
HanXRQChr16g0517851 Helianthus annuus HOM05D001665 ORTHO05D001524 8.2e-06 54.3 101 37.6
Nitab4.5_0000635g0110 Nicotiana tabacum HOM05D001665 ORTHO05D001524 8.2e-06 54.3 90 37.8
Nitab4.5_0000998g0010 Nicotiana tabacum HOM05D001665 ORTHO05D001524 8.2e-06 54.3 63 50.8
PSO541G4283 Papaver somniferum HOM05D001665 ORTHO05D001524 8.2e-06 54.3 62 50.0
PSO675G5067 Papaver somniferum HOM05D001665 ORTHO05D001524 8.2e-06 54.3 62 50.0
Solyc03g006590.3 Solanum lycopersicum HOM05D001665 ORTHO05D001524 8.2e-06 54.3 99 37.4
Sopen10g004350 Solanum pennellii HOM05D001665 ORTHO05D001524 8.2e-06 54.3 59 52.5
PGSC0003DMG400022427 Solanum tuberosum HOM05D001665 ORTHO05D001524 8.2e-06 54.3 82 42.7
Thecc.06G194700 Theobroma cacao HOM05D001665 ORTHO05D001524 8.2e-06 54.3 51 58.8


User provided reference genes

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