Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb195020 Zea mays HOM05D007204 ORTHO05D008593 7.4e-136 487.3 258 100.0
Os11g0106800 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 7.1e-78 294.7 239 68.2
Os12g0106100 Oryza sativa ssp. japonica HOM05D007204 ORTHO05D008593 3.1e-73 279.3 231 68.0
Zm00001eb025660 Zea mays HOM05D007204 ORTHO05D008593 6.7e-44 181.8 95 95.8
Nn2g10986 Nelumbo nucifera HOM05D007204 ORTHO05D008593 6.7e-36 155.2 243 40.7
HPP92_019711 Vanilla planifolia HOM05D000883 ORTHO05D002942 4.1e-33 146.0 239 40.6
PSO339G1295 Papaver somniferum HOM05D007204 ORTHO05D008593 1.0e-31 141.4 230 42.6
Sed0020276 Sechium edule HOM05D007204 ORTHO05D008593 1.0e-31 141.4 234 38.9
Cc01_g14730 Coffea canephora HOM05D007204 ORTHO05D008593 1.1e-30 137.9 234 37.2
Dinv09663 Davidia involucrata HOM05D007204 ORTHO05D008593 3.2e-30 136.3 234 38.9
AT1G07060 Arabidopsis thaliana HOM05D007204 ORTHO05D008593 4.2e-30 136.0 247 38.1
COL.COLO4_11129 Corchorus olitorius HOM05D007204 ORTHO05D008593 7.2e-30 135.2 248 36.3
Duzib168G0028 Durio zibethinus HOM05D007204 ORTHO05D008593 7.2e-30 135.2 250 37.6
CARHR006750 Cardamine hirsuta HOM05D007204 ORTHO05D008593 9.4e-30 134.8 239 38.1
Gorai.003G149500 Gossypium raimondii HOM05D007204 ORTHO05D008593 1.2e-29 134.4 237 40.9
PSO801G0770 Papaver somniferum HOM05D007204 ORTHO05D008593 1.2e-29 134.4 233 42.5
Carub.0001s0635 Capsella rubella HOM05D007204 ORTHO05D008593 1.6e-29 134.0 228 38.6
Gohir.D03G142400 Gossypium hirsutum HOM05D007204 ORTHO05D008593 3.6e-29 132.9 247 39.7
Thecc.09G355900 Theobroma cacao HOM05D007204 ORTHO05D008593 4.7e-29 132.5 249 38.2
AL1G17180 Arabidopsis lyrata HOM05D007204 ORTHO05D008593 6.1e-29 132.1 248 37.1
MELO3C026086.2 Cucumis melo HOM05D007204 ORTHO05D008593 6.1e-29 132.1 242 38.4
MBI03_g33621_MAGBIO Magnolia biondii HOM05D007204 ORTHO05D008593 1.0e-28 131.3 318 34.0
Sp1g05780 Schrenkiella parvula HOM05D007204 ORTHO05D008593 1.0e-28 131.3 240 38.3
PGR102G0940 Punica granatum HOM05D007204 ORTHO05D008593 1.4e-28 131.0 234 37.2
TWI31G1133 Tripterygium wilfordii HOM05D007204 ORTHO05D008593 1.4e-28 131.0 231 38.1
GSVIVG01024663001 Vitis vinifera HOM05D007204 ORTHO05D008593 1.4e-28 131.0 234 38.5
Aa31LG1G8110 Aethionema arabicum HOM05D007204 ORTHO05D008593 3.0e-28 129.8 252 38.1
MD11G1063300 Malus domestica HOM05D007204 ORTHO05D008593 3.9e-28 129.4 251 39.0
Atru.chr3.4133 Acer truncatum HOM05D007204 ORTHO05D008593 5.1e-28 129.0 243 36.6
FvH4_3g39530 Fragaria vesca HOM05D007204 ORTHO05D008593 5.1e-28 129.0 246 37.4
FAN16G2350 Fragaria x ananassa HOM05D007204 ORTHO05D008593 1.1e-27 127.9 246 37.4
Prupe.6G050500 Prunus persica HOM05D007204 ORTHO05D008593 1.5e-27 127.5 247 37.2
Potri.001G281500 Populus trichocarpa HOM05D007204 ORTHO05D008593 3.3e-27 126.3 241 36.1
Psat5g153840 Pisum sativum HOM05D007204 ORTHO05D008593 7.4e-27 125.2 236 38.6
A10p05600 Brassica napus HOM05D007204 ORTHO05D008593 9.7e-27 124.8 239 36.0
TPR.G32886 Trifolium pratense HOM05D007204 ORTHO05D008593 9.7e-27 124.8 237 38.8
CsaV3_1G015330 Cucumis sativus L. HOM05D007204 ORTHO05D008593 1.3e-26 124.4 229 36.7
Lj6g0005890 Lotus japonicus HOM05D007204 ORTHO05D008593 1.3e-26 124.4 236 38.1
Actinidia32616 Actinidia chinensis HOM05D007204 ORTHO05D008593 2.2e-26 123.6 234 36.3
BcaC05g24670 Brassica carinata HOM05D007204 ORTHO05D008593 2.2e-26 123.6 246 35.8
FAN25G1877 Fragaria x ananassa HOM05D007204 ORTHO05D008593 2.2e-26 123.6 246 37.0
C05p05140 Brassica napus HOM05D007204 ORTHO05D008593 3.7e-26 122.9 246 35.8
AUR62009682 Chenopodium quinoa HOM05D007204 ORTHO05D008593 3.7e-26 122.9 231 39.0
Sc21g0005220 Simmondsia chinensis HOM05D007204 ORTHO05D008593 3.7e-26 122.9 236 36.4
BcaNung06767 Brassica carinata HOM05D007204 ORTHO05D008593 6.3e-26 122.1 246 36.2
RcHm_v2.0_Chr5g0071301 Rosa chinensis HOM05D007204 ORTHO05D008593 8.2e-26 121.7 245 38.4
Aqoxy2G00798 Aquilegia oxysepala HOM05D007204 ORTHO05D008593 1.4e-25 120.9 183 43.7
CiPaw.14G055100 Carya illinoinensis HOM05D007204 ORTHO05D008593 1.8e-25 120.6 240 36.7
Manes.17G034600 Manihot esculenta HOM05D007204 ORTHO05D008593 1.8e-25 120.6 233 37.3
TAR623G0341 Trochodendron aralioides HOM05D007204 ORTHO05D008593 5.3e-25 119.0 168 42.3
THA.LOC104800761 Tarenaya hassleriana HOM05D007204 ORTHO05D008593 7.0e-25 118.6 253 35.6
Phvul.006G073000 Phaseolus vulgaris HOM05D007204 ORTHO05D008593 9.1e-25 118.2 236 36.4
Nitab4.5_0007880g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 1.2e-24 117.9 252 35.3
QL01p040026 Quercus lobata HOM05D007204 ORTHO05D008593 2.0e-24 117.1 241 36.9
Eucgr.B03990 Eucalyptus grandis HOM05D007204 ORTHO05D008593 3.5e-24 116.3 251 36.3
VMungo0540G1924 Vigna mungo HOM05D007204 ORTHO05D008593 3.5e-24 116.3 220 36.4
Ciclev10029273m.g Citrus clementina HOM05D007204 ORTHO05D008593 2.9e-23 113.2 198 34.3
BraA10t42821Z Brassica rapa HOM05D007204 ORTHO05D008593 3.8e-23 112.8 263 32.7
Thhalv10009490m.g Eutrema salsugineum HOM05D007204 ORTHO05D008593 3.8e-23 112.8 204 37.7
SGA_v2.0_scaffold146G36125 Striga asiatica HOM05D007204 ORTHO05D008593 3.8e-23 112.8 240 32.5
DCAR_012274 Daucus carota HOM05D007204 ORTHO05D008593 1.5e-22 110.9 176 43.2
Migut.N00766 Erythranthe guttata HOM05D007204 ORTHO05D008593 1.5e-22 110.9 240 33.3
Gohir.A03G026100 Gossypium hirsutum HOM05D007204 ORTHO05D008593 4.2e-22 109.4 180 41.7
ATR0174G030 Amborella trichopoda HOM05D007204 ORTHO05D008593 5.5e-22 109.0 178 38.8
FAN21G2638 Fragaria x ananassa HOM05D007204 ORTHO05D008593 5.5e-22 109.0 207 38.2
ClCG03G000270 Citrullus lanatus HOM05D007204 ORTHO05D008593 7.2e-22 108.6 229 35.8
FAN11G3207 Fragaria x ananassa HOM05D007204 ORTHO05D008593 7.2e-22 108.6 215 36.3
HanXRQChr08g0229231 Helianthus annuus HOM05D007204 ORTHO05D008593 7.2e-22 108.6 236 33.9
arahy.Tifrunner.gnm1.ann1.IVNQ32 Arachis hypogaea HOM05D007204 ORTHO05D008593 9.4e-22 108.2 268 33.2
arahy.Tifrunner.gnm1.ann1.QCA2Y7 Arachis hypogaea HOM05D007204 ORTHO05D008593 9.4e-22 108.2 257 34.2
AUR62001886 Chenopodium quinoa HOM05D007204 ORTHO05D008593 9.4e-22 108.2 267 34.1
BolC5t29286H Brassica oleracea HOM05D007204 ORTHO05D008593 1.2e-21 107.8 270 32.6
Oeu034090.2 Olea europaea HOM05D007204 ORTHO05D008593 1.2e-21 107.8 250 32.0
BcaNung06763 Brassica carinata HOM05D007204 ORTHO05D008593 8.0e-21 105.1 267 31.8
Hund18956 Selenicereus undatus HOM05D007204 ORTHO05D008593 8.0e-21 105.1 209 38.8
BcaC05g24674 Brassica carinata HOM05D007204 ORTHO05D008593 1.1e-19 101.3 178 38.2
PGSC0003DMG400030457 Solanum tuberosum HOM05D007204 ORTHO05D008593 1.1e-19 101.3 230 32.6
Peaxi162Scf00390g00079 Petunia axillaris HOM05D007204 ORTHO05D008593 1.5e-19 100.9 234 32.9
Medtr3g031680 Medicago truncatula HOM05D007204 ORTHO05D008593 5.7e-19 99.0 177 40.7
Rhsim13G0065200 Rhododendron simsii HOM05D007204 ORTHO05D008593 5.7e-19 99.0 305 29.5
Hma1.2p1_0841F.1_g226930 Hydrangea macrophylla HOM05D007204 ORTHO05D008593 9.7e-19 98.2 169 40.2
MSTRG.9779 Avicennia marina HOM05D007204 ORTHO05D008593 1.7e-18 97.4 237 31.2
Medtr3g031720 Medicago truncatula HOM05D007204 ORTHO05D008593 3.7e-18 96.3 177 39.0
CANSAT54G2573 Cannabis sativa HOM05D007204 ORTHO05D008593 1.1e-17 94.7 201 34.8
Lj2A1091T48 Lonicera japonica HOM05D007204 ORTHO05D008593 3.1e-17 93.2 127 42.5
Glyma.18G058101 Glycine max HOM05D007204 ORTHO05D008593 1.6e-16 90.9 136 42.6
Cfa011760 Carpinus fangiana HOM05D007204 ORTHO05D008593 2.0e-16 90.5 152 42.1
Lsat_1_v5_gn_9_18401 Lactuca sativa HOM05D007204 ORTHO05D008593 3.5e-16 89.7 240 31.2
Nitab4.5_0009741g0040 Nicotiana tabacum HOM05D007204 ORTHO05D008593 4.5e-16 89.4 289 29.1
Sabra16G0175100 Salix brachista HOM05D007204 ORTHO05D008593 4.5e-16 89.4 151 37.7
Solyc06g082320.4 Solanum lycopersicum HOM05D007204 ORTHO05D008593 2.5e-14 83.6 147 38.1
Lalb_Chr15g0083171 Lupinus albus HOM05D007204 ORTHO05D008593 7.2e-14 82.0 142 38.0
SEGI_02179 Sequoiadendron giganteum HOM05D056589 ORTHO05D008593 1.2e-13 81.3 221 31.2
unitig_94.g28350 Utricularia gibba HOM05D007204 ORTHO05D008593 1.2e-13 81.3 218 32.1
SGA_v2.0_scaffold120G32948 Striga asiatica HOM05D007204 ORTHO05D008593 6.8e-12 75.5 143 33.6
ECA247G3086 Erigeron canadensis HOM05D007204 ORTHO05D008593 1.7e-10 70.9 144 33.3
SalBow2G2431 Salvia bowleyana HOM05D007204 ORTHO05D008593 1.8e-09 67.4 175 31.4
CSS0017241 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 4.5e-08 62.8 102 38.2
CSS0041349 Camellia sinensis var. sinensis HOM05D007204 ORTHO05D008593 4.5e-08 62.8 102 38.2
Sopen06g033710 Solanum pennellii HOM05D007204 ORTHO05D008593 1.1e-06 58.2 131 31.3


User provided reference genes

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