Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb193780 Zea mays HOM05D019308 ORTHO05D001767 1.2e-209 733.0 403 100.0
Os02g0761300 Oryza sativa ssp. japonica HOM05D019308 ORTHO05D037137 3.3e-82 309.7 415 50.4
Os06g0215100 Oryza sativa ssp. japonica HOM05D019308 ORTHO05D037137 5.2e-51 206.1 451 39.5
Zm00001eb373100 Zea mays HOM05D019308 ORTHO05D037137 1.3e-33 148.3 413 36.8
Zm00001eb101870 Zea mays HOM05D019308 ORTHO05D030701 5.4e-24 116.3 316 38.0
Nn5g30193 Nelumbo nucifera HOM05D001841 ORTHO05D001767 5.4e-16 89.7 440 27.3
PGR142G1787 Punica granatum HOM05D001841 ORTHO05D001767 2.7e-15 87.4 477 26.8
Prupe.8G119300 Prunus persica HOM05D001841 ORTHO05D001767 6.0e-15 86.3 464 26.1
Duzib093G1523 Durio zibethinus HOM05D001841 ORTHO05D001767 7.8e-15 85.9 402 26.1
TAR381G0762 Trochodendron aralioides HOM05D001841 ORTHO05D001767 7.8e-15 85.9 439 25.5
MBI02_g21198_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 1.0e-14 85.5 300 28.3
CDE10G0885 Ceratophyllum demersum HOM05D000371 ORTHO05D006340 2.3e-14 84.3 320 29.1
Duzib116G0233 Durio zibethinus HOM05D001841 ORTHO05D001767 2.3e-14 84.3 403 26.3
Migut.N02690 Erythranthe guttata HOM05D001841 ORTHO05D001767 6.6e-14 82.8 372 27.2
Eucgr.F00024 Eucalyptus grandis HOM05D001841 ORTHO05D001767 1.1e-13 82.0 223 33.2
Thecc.08G013800 Theobroma cacao HOM05D001841 ORTHO05D001767 2.5e-13 80.9 394 26.4
Nitab4.5_0000736g0050 Nicotiana tabacum HOM05D001841 ORTHO05D001767 3.3e-13 80.5 339 28.0
CANSAT25G1334 Cannabis sativa HOM05D001841 ORTHO05D001767 1.2e-12 78.6 446 25.1
PGSC0003DMG400018102 Solanum tuberosum HOM05D001841 ORTHO05D001767 1.6e-12 78.2 250 32.0
Sabra04G0095000 Salix brachista HOM05D001841 ORTHO05D001767 2.1e-12 77.8 246 31.3
vmacro04468 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 2.1e-12 77.8 351 25.4
Oeu007260.1 Olea europaea HOM05D001841 ORTHO05D001767 2.8e-12 77.4 349 26.9
PSO541G1997 Papaver somniferum HOM05D001841 ORTHO05D001767 2.8e-12 77.4 426 26.3
vmacro19487 Vaccinium macrocarpon HOM05D001841 ORTHO05D001767 2.8e-12 77.4 447 25.7
TAR625G0113 Trochodendron aralioides HOM05D001841 ORTHO05D001767 3.6e-12 77.0 311 31.5
FvH4_2g06670 Fragaria vesca HOM05D001841 ORTHO05D001767 4.7e-12 76.6 443 25.5
FAN15G3466 Fragaria x ananassa HOM05D001841 ORTHO05D001767 6.2e-12 76.3 443 25.5
MD10G1090600 Malus domestica HOM05D001841 ORTHO05D001767 6.2e-12 76.3 459 25.7
SEGI_26394 Sequoiadendron giganteum HOM05D001841 ORTHO05D001767 6.2e-12 76.3 197 33.5
QL11p037275 Quercus lobata HOM05D001841 ORTHO05D001767 8.1e-12 75.9 458 23.8
MSTRG.16762 Avicennia marina HOM05D001841 ORTHO05D001767 1.1e-11 75.5 337 27.9
PSO675G9020 Papaver somniferum HOM05D001841 ORTHO05D001767 1.1e-11 75.5 426 25.6
Solyc03g112700.1 Solanum lycopersicum HOM05D001841 ORTHO05D001767 1.1e-11 75.5 250 30.8
FAN20G1156 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.4e-11 75.1 443 25.3
FAN24G1402 Fragaria x ananassa HOM05D001841 ORTHO05D001767 1.4e-11 75.1 443 25.5
CAN.G1166.17 Capsicum annuum HOM05D001841 ORTHO05D001767 1.8e-11 74.7 294 29.3
MBI06_g08193_MAGBIO Magnolia biondii HOM05D001841 ORTHO05D001767 1.8e-11 74.7 278 30.2
QL02p006055 Quercus lobata HOM05D001841 ORTHO05D001767 2.4e-11 74.3 320 30.3
ATR0097G009 Amborella trichopoda HOM05D001841 ORTHO05D001767 3.1e-11 73.9 321 29.9
Peaxi162Scf00684g00566 Petunia axillaris HOM05D001841 ORTHO05D001767 3.1e-11 73.9 343 27.7
Sc08g0000020 Simmondsia chinensis HOM05D001841 ORTHO05D001767 3.1e-11 73.9 238 29.0
Sopen03g031780 Solanum pennellii HOM05D001841 ORTHO05D001767 3.1e-11 73.9 250 30.4
Lalb_Chr05g0219031 Lupinus albus HOM05D001841 ORTHO05D001767 5.2e-11 73.2 393 23.7
Potri.009G105400 Populus trichocarpa HOM05D001841 ORTHO05D001767 5.2e-11 73.2 381 25.2
Gohir.A05G199948 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.8e-11 72.8 316 27.2
Hma1.2p1_0370F.1_g138000 Hydrangea macrophylla HOM05D001841 ORTHO05D001767 6.8e-11 72.8 355 28.2
Manes.17G093500 Manihot esculenta HOM05D001841 ORTHO05D001767 6.8e-11 72.8 472 23.9
Migut.B00315 Erythranthe guttata HOM05D001841 ORTHO05D001767 8.9e-11 72.4 279 29.7
Nn1g05855 Nelumbo nucifera HOM05D001841 ORTHO05D001767 1.2e-10 72.0 307 27.7
Actinidia27944 Actinidia chinensis HOM05D000058 ORTHO05D001767 1.5e-10 71.6 313 27.8
CDE10G0919 Ceratophyllum demersum HOM05D004348 ORTHO05D006191 1.5e-10 71.6 214 33.6
Rhsim07G0231600 Rhododendron simsii HOM05D001841 ORTHO05D001767 1.5e-10 71.6 353 25.5
TAR376G0142 Trochodendron aralioides HOM05D001841 ORTHO05D001767 1.5e-10 71.6 277 28.2
THA.LOC104803791 Tarenaya hassleriana HOM05D001841 ORTHO05D001767 2.0e-10 71.2 332 27.1
Eucgr.I01168 Eucalyptus grandis HOM05D001841 ORTHO05D001767 2.6e-10 70.9 415 24.6
GSVIVG01009563001 Vitis vinifera HOM05D001841 ORTHO05D001767 2.6e-10 70.9 157 37.6
Cpa.g.sc376.7 Carica papaya HOM05D001841 ORTHO05D001767 3.4e-10 70.5 319 27.9
Gohir.A03G087800 Gossypium hirsutum HOM05D001841 ORTHO05D001767 5.8e-10 69.7 344 27.6
Gohir.D02G092900 Gossypium hirsutum HOM05D001841 ORTHO05D001767 5.8e-10 69.7 344 27.9
Gorai.009G209200 Gossypium raimondii HOM05D001841 ORTHO05D001767 7.6e-10 69.3 342 26.3
CiPaw.06G142300 Carya illinoinensis HOM05D001841 ORTHO05D001767 9.9e-10 68.9 456 23.0
HPP92_009515 Vanilla planifolia HOM05D001841 ORTHO05D001767 9.9e-10 68.9 123 37.4
HPP92_010953 Vanilla planifolia HOM05D001841 ORTHO05D001767 1.3e-09 68.6 210 33.3
DCAR_029019 Daucus carota HOM05D001841 ORTHO05D001767 2.2e-09 67.8 187 34.2
Lj4g0016353 Lotus japonicus HOM05D001841 ORTHO05D001767 2.9e-09 67.4 387 25.6
Rhsim05G0081500 Rhododendron simsii HOM05D001841 ORTHO05D001767 2.9e-09 67.4 293 24.9
Sabra09G0080500 Salix brachista HOM05D001841 ORTHO05D001767 2.9e-09 67.4 382 25.1
Dinv42133 Davidia involucrata HOM05D001841 ORTHO05D001767 3.8e-09 67.0 361 26.0
Gorai.013G042200 Gossypium raimondii HOM05D001841 ORTHO05D001767 3.8e-09 67.0 421 25.2
AL4G19390 Arabidopsis lyrata HOM05D001841 ORTHO05D001767 4.9e-09 66.6 293 27.6
Potri.002G128500 Populus trichocarpa HOM05D001841 ORTHO05D001767 4.9e-09 66.6 204 32.4
Cfa005454 Carpinus fangiana HOM05D001841 ORTHO05D001767 6.4e-09 66.2 411 24.6
Gohir.D13G037500 Gossypium hirsutum HOM05D001841 ORTHO05D001767 6.4e-09 66.2 418 25.4
CiPaw.05G053900 Carya illinoinensis HOM05D001841 ORTHO05D001767 8.4e-09 65.9 276 28.6
Gorai.005G104600 Gossypium raimondii HOM05D001841 ORTHO05D001767 1.1e-08 65.5 344 27.6
Atru.chr13.625 Acer truncatum HOM05D001841 ORTHO05D001767 1.9e-08 64.7 354 26.6
Cc02_g18570 Coffea canephora HOM05D001841 ORTHO05D001767 1.9e-08 64.7 249 30.9
Haze_01864 Corylus avellana HOM05D001841 ORTHO05D001767 1.9e-08 64.7 413 27.1
Lj4C50T9 Lonicera japonica HOM05D001841 ORTHO05D001767 1.9e-08 64.7 372 25.0
MELO3C018439.2 Cucumis melo HOM05D001841 ORTHO05D001767 2.4e-08 64.3 353 26.3
Gohir.D05G203200 Gossypium hirsutum HOM05D001841 ORTHO05D001767 2.4e-08 64.3 299 26.4
Lsat_1_v5_gn_5_113300 Lactuca sativa HOM05D001841 ORTHO05D001767 2.4e-08 64.3 297 26.9
TWI56G0311 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 2.4e-08 64.3 325 27.7
MSTRG.1330 Avicennia marina HOM05D001841 ORTHO05D001767 3.2e-08 63.9 408 24.8
MSTRG.20139 Avicennia marina HOM05D001841 ORTHO05D001767 3.2e-08 63.9 362 25.4
Dinv23581 Davidia involucrata HOM05D001841 ORTHO05D001767 3.2e-08 63.9 276 25.7
Duzib132G0939 Durio zibethinus HOM05D001841 ORTHO05D001767 3.2e-08 63.9 472 23.7
ClCG02G005790 Citrullus lanatus HOM05D001841 ORTHO05D001767 4.1e-08 63.5 372 23.7
COL.COLO4_26453 Corchorus olitorius HOM05D001841 ORTHO05D001767 4.1e-08 63.5 197 31.0
Nitab4.5_0001413g0010 Nicotiana tabacum HOM05D001841 ORTHO05D001767 4.1e-08 63.5 200 29.5
SGA_v2.0_scaffold32G13089 Striga asiatica HOM05D001841 ORTHO05D001767 4.1e-08 63.5 304 28.3
Oeu013688.1 Olea europaea HOM05D001841 ORTHO05D001767 5.4e-08 63.2 221 29.0
TWI36G0039 Tripterygium wilfordii HOM05D001841 ORTHO05D001767 5.4e-08 63.2 302 27.5
CsaV3_2G014120 Cucumis sativus L. HOM05D001841 ORTHO05D001767 7.1e-08 62.8 189 33.3
Aqoxy6G01410 Aquilegia oxysepala HOM05D001841 ORTHO05D001767 1.2e-07 62.0 223 27.8
CDE03G0088 Ceratophyllum demersum HOM05D000370 ORTHO05D001767 1.2e-07 62.0 387 25.8
Aa31LG5G9340 Aethionema arabicum HOM05D006792 ORTHO05D008489 1.6e-07 61.6 292 29.1
CsaV3_7G008710 Cucumis sativus L. HOM05D001841 ORTHO05D001767 1.6e-07 61.6 359 24.2
Gohir.A12G025600 Gossypium hirsutum HOM05D001841 ORTHO05D001767 1.6e-07 61.6 301 26.2
Gohir.A13G039000 Gossypium hirsutum HOM05D001841 ORTHO05D001767 2.1e-07 61.2 422 24.6
Gorai.008G025600 Gossypium raimondii HOM05D001841 ORTHO05D001767 2.1e-07 61.2 301 25.2
AT2G26530 Arabidopsis thaliana HOM05D001841 ORTHO05D001767 2.7e-07 60.8 297 27.3
SEGI_11594 Sequoiadendron giganteum HOM05D003270 ORTHO05D003662 2.7e-07 60.8 275 30.5
MELO3C021907.2 Cucumis melo HOM05D001841 ORTHO05D001767 3.5e-07 60.5 285 27.7
Gohir.D12G025300 Gossypium hirsutum HOM05D001841 ORTHO05D001767 3.5e-07 60.5 301 24.9
HanXRQChr11g0324211 Helianthus annuus HOM05D001841 ORTHO05D001767 3.5e-07 60.5 234 27.8
RcHm_v2.0_Chr6g0258711 Rosa chinensis HOM05D001841 ORTHO05D001767 4.6e-07 60.1 482 24.1
Lsat_1_v5_gn_1_19921 Lactuca sativa HOM05D001841 ORTHO05D001767 6.0e-07 59.7 250 26.8
CANSAT25G3674 Cannabis sativa HOM05D001841 ORTHO05D001767 7.8e-07 59.3 300 29.3
Ciclev10001332m.g Citrus clementina HOM05D001841 ORTHO05D001767 7.8e-07 59.3 94 42.6
ClCG09G017450 Citrullus lanatus HOM05D001841 ORTHO05D001767 1.0e-06 58.9 294 28.2
Oeu009759.1 Olea europaea HOM05D001841 ORTHO05D001767 1.0e-06 58.9 166 37.3
CDE06G1867 Ceratophyllum demersum HOM05D000370 ORTHO05D001366 1.3e-06 58.5 391 25.8
Potri.014G034900 Populus trichocarpa HOM05D001841 ORTHO05D001767 1.3e-06 58.5 391 24.6
BcaB06g27216 Brassica carinata HOM05D001841 ORTHO05D001767 1.7e-06 58.2 260 28.1
PGSC0003DMG400025897 Solanum tuberosum HOM05D001841 ORTHO05D001767 1.7e-06 58.2 212 32.1
Thecc.02G097700 Theobroma cacao HOM05D001841 ORTHO05D001767 1.7e-06 58.2 343 24.8
Carub.0004s0670 Capsella rubella HOM05D001841 ORTHO05D001767 2.3e-06 57.8 295 26.1
Cc10_g03940 Coffea canephora HOM05D001841 ORTHO05D001767 2.3e-06 57.8 366 24.3
Manes.15G142400 Manihot esculenta HOM05D001841 ORTHO05D001767 2.3e-06 57.8 344 24.4
Sabra14G0024800 Salix brachista HOM05D001841 ORTHO05D001767 2.3e-06 57.8 386 24.9
CARHR120050 Cardamine hirsuta HOM05D001841 ORTHO05D001767 3.0e-06 57.4 184 31.0
AUR62011434 Chenopodium quinoa HOM05D001841 ORTHO05D001767 3.9e-06 57.0 213 33.3
PGR083G2104 Punica granatum HOM05D001841 ORTHO05D001767 3.9e-06 57.0 332 25.6
Sed0014466 Sechium edule HOM05D001841 ORTHO05D001767 3.9e-06 57.0 122 37.7
Duzib052G0781 Durio zibethinus HOM05D001841 ORTHO05D001767 5.1e-06 56.6 465 24.3
Potri.004G143500 Populus trichocarpa HOM05D001841 ORTHO05D001767 5.1e-06 56.6 230 28.3
Nn4g25773 Nelumbo nucifera HOM05D001841 ORTHO05D001767 8.7e-06 55.8 226 29.2
SalBow6G4282 Salvia bowleyana HOM05D001841 ORTHO05D001767 8.7e-06 55.8 119 35.3


User provided reference genes

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