Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb193770 Zea mays HOM05D004239 ORTHO05D445176 7.0e-159 563.9 287 100.0
Zm00001eb254860 Zea mays HOM05D000138 ORTHO05D000078 5.7e-68 261.9 158 86.1
Zm00001eb063950 Zea mays HOM05D004239 ORTHO05D005191 3.7e-67 259.2 216 67.6
Zm00001eb252610 Zea mays HOM05D001671 ORTHO05D000078 5.0e-64 248.8 138 91.3
Zm00001eb116860 Zea mays HOM05D000138 ORTHO05D441841 4.5e-49 199.1 117 90.6
Zm00001eb194470 Zea mays HOM05D000138 ORTHO05D445442 5.3e-42 175.6 176 60.2
Zm00001eb209270 Zea mays HOM05D004239 ORTHO05D005191 1.8e-29 134.0 73 91.8
Zm00001eb209470 Zea mays HOM05D004239 ORTHO05D005191 1.2e-28 131.3 73 89.0
Os10g0329300 Oryza sativa ssp. japonica HOM05D004239 ORTHO05D005191 1.3e-24 117.9 85 72.9
Zm00001eb218940 Zea mays HOM05D000558 ORTHO05D001857 5.5e-23 112.5 147 52.4
Zm00001eb181900 Zea mays HOM05D000558 ORTHO05D001857 4.0e-21 106.3 65 89.2
Aqoxy2G03302 Aquilegia oxysepala HOM05D004239 ORTHO05D005191 7.8e-17 92.0 82 54.9
Nn1g02198 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.7e-16 90.9 82 54.9
Actinidia23624 Actinidia chinensis HOM05D004239 ORTHO05D005191 5.0e-16 89.4 98 48.0
Nn4g26228 Nelumbo nucifera HOM05D004239 ORTHO05D005191 1.1e-15 88.2 82 53.7
Dinv23953 Davidia involucrata HOM05D004239 ORTHO05D005191 1.5e-15 87.8 98 49.0
Os02g0747600 Oryza sativa ssp. japonica HOM05D000138 ORTHO05D000078 3.3e-15 86.7 160 38.1
Cc00_g15600 Coffea canephora HOM05D004239 ORTHO05D005191 4.3e-15 86.3 82 52.4
Peaxi162Scf00037g00226 Petunia axillaris HOM05D004239 ORTHO05D005191 5.6e-15 85.9 100 46.0
Haze_04207 Corylus avellana HOM05D004239 ORTHO05D005191 9.5e-15 85.1 82 50.0
Oeu038249.1 Olea europaea HOM05D004239 ORTHO05D005191 1.2e-14 84.7 82 51.2
Peaxi162Scf00471g00018 Petunia axillaris HOM05D004239 ORTHO05D005191 1.2e-14 84.7 82 53.7
Sp2g20670 Schrenkiella parvula HOM05D004239 ORTHO05D005191 1.2e-14 84.7 91 49.5
Lj9A25G19 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-14 84.3 100 44.0
Lj9A26G17 Lonicera japonica HOM05D004239 ORTHO05D005191 1.6e-14 84.3 100 44.0
Nitab4.5_0002031g0070 Nicotiana tabacum HOM05D004239 ORTHO05D005191 2.1e-14 84.0 82 53.7
Cfa006576 Carpinus fangiana HOM05D004239 ORTHO05D005191 2.8e-14 83.6 109 41.3
Dinv40275 Davidia involucrata HOM05D004239 ORTHO05D005191 2.8e-14 83.6 82 50.0
BcaC04g23678 Brassica carinata HOM05D004239 ORTHO05D005191 3.6e-14 83.2 82 47.6
C09p05760 Brassica napus HOM05D004239 ORTHO05D005191 3.6e-14 83.2 92 43.5
BolC9t53503H Brassica oleracea HOM05D004239 ORTHO05D005191 3.6e-14 83.2 82 47.6
Thhalv10004396m.g Eutrema salsugineum HOM05D004239 ORTHO05D005191 3.6e-14 83.2 86 47.7
SGA_v2.0_scaffold81G26082 Striga asiatica HOM05D004239 ORTHO05D005191 3.6e-14 83.2 82 52.4
A09p05280 Brassica napus HOM05D004239 ORTHO05D005191 4.7e-14 82.8 87 47.1
Nitab4.5_0005388g0060 Nicotiana tabacum HOM05D004239 ORTHO05D005191 4.7e-14 82.8 82 52.4
Solyc01g098840.3 Solanum lycopersicum HOM05D004239 ORTHO05D005191 4.7e-14 82.8 82 52.4
PGSC0003DMG401028586 Solanum tuberosum HOM05D004239 ORTHO05D005191 4.7e-14 82.8 82 52.4
BraA09t36167Z Brassica rapa HOM05D004239 ORTHO05D005191 6.1e-14 82.4 93 45.2
Ciclev10001383m.g Citrus clementina HOM05D004239 ORTHO05D005191 6.1e-14 82.4 79 53.2
Nitab4.5_0009323g0010 Nicotiana tabacum HOM05D004239 ORTHO05D005191 6.1e-14 82.4 82 52.4
Psat3g010600 Pisum sativum HOM05D004239 ORTHO05D005191 6.1e-14 82.4 82 52.4
CAN.G1077.21 Capsicum annuum HOM05D004239 ORTHO05D005191 8.0e-14 82.0 99 43.4
Manes.09G165700 Manihot esculenta HOM05D004239 ORTHO05D005191 1.0e-13 81.6 105 41.0
Sopen01g042380 Solanum pennellii HOM05D004239 ORTHO05D005191 1.0e-13 81.6 82 51.2
Aa31LG11G9210 Aethionema arabicum HOM05D004239 ORTHO05D005191 1.4e-13 81.3 91 44.0
MSTRG.5107 Avicennia marina HOM05D004239 ORTHO05D005191 1.4e-13 81.3 82 48.8
ClCG02G015900 Citrullus lanatus HOM05D004239 ORTHO05D005191 1.4e-13 81.3 93 48.4
Oeu027738.1 Olea europaea HOM05D004239 ORTHO05D005191 1.4e-13 81.3 81 49.4
PSO063G4628 Papaver somniferum HOM05D004239 ORTHO05D005191 1.4e-13 81.3 82 51.2
Sed0006954 Sechium edule HOM05D004239 ORTHO05D005191 1.8e-13 80.9 96 44.8
TAR365G0701 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.8e-13 80.9 87 49.4
TAR636G0428 Trochodendron aralioides HOM05D004239 ORTHO05D005191 1.8e-13 80.9 82 50.0
EL10Ac4g09340 Beta vulgaris HOM05D004239 ORTHO05D005191 2.3e-13 80.5 82 50.0
Cpa.g.sc48.35 Carica papaya HOM05D004239 ORTHO05D005191 2.3e-13 80.5 82 50.0
BcaB04g19671 Brassica carinata HOM05D004239 ORTHO05D005191 3.1e-13 80.1 83 44.6
Actinidia05711 Actinidia chinensis HOM05D004239 ORTHO05D005191 4.0e-13 79.7 95 47.4
AT5G27450 Arabidopsis thaliana HOM05D004239 ORTHO05D005191 4.0e-13 79.7 89 42.7
C02p58120 Brassica napus HOM05D004239 ORTHO05D005191 4.0e-13 79.7 89 47.2
Phvul.006G092900 Phaseolus vulgaris HOM05D004239 ORTHO05D005191 4.0e-13 79.7 73 53.4
GSVIVG01000037001 Vitis vinifera HOM05D004239 ORTHO05D005191 4.0e-13 79.7 79 49.4
BolC2t11880H Brassica oleracea HOM05D004239 ORTHO05D005191 5.2e-13 79.3 89 46.1
BraA02t08839Z Brassica rapa HOM05D004239 ORTHO05D005191 5.2e-13 79.3 98 44.9
MELO3C004278.2 Cucumis melo HOM05D004239 ORTHO05D005191 5.2e-13 79.3 96 44.8
Lj1g0017751 Lotus japonicus HOM05D004239 ORTHO05D005191 5.2e-13 79.3 82 50.0
THA.LOC104802807 Tarenaya hassleriana HOM05D004239 ORTHO05D005191 5.2e-13 79.3 73 52.1
Actinidia19795 Actinidia chinensis HOM05D004239 ORTHO05D005191 6.8e-13 79.0 99 47.5
A02p38630 Brassica napus HOM05D004239 ORTHO05D005191 6.8e-13 79.0 92 47.8
vmacro23128 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 6.8e-13 79.0 89 47.2
AL6G39560 Arabidopsis lyrata HOM05D004239 ORTHO05D005191 1.5e-12 77.8 89 42.7
CsaV3_2G005140 Cucumis sativus L. HOM05D004239 ORTHO05D005191 1.5e-12 77.8 96 43.8
QL03p006503 Quercus lobata HOM05D004239 ORTHO05D005191 1.5e-12 77.8 82 47.6
CiPaw.07G016500 Carya illinoinensis HOM05D004239 ORTHO05D005191 2.0e-12 77.4 75 50.7
Manes.08G122300 Manihot esculenta HOM05D004239 ORTHO05D005191 2.0e-12 77.4 95 43.2
CARHR186060 Cardamine hirsuta HOM05D004239 ORTHO05D005191 2.6e-12 77.0 82 45.1
Gohir.A11G295900 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.6e-12 77.0 79 48.1
Gohir.D11G311000 Gossypium hirsutum HOM05D004239 ORTHO05D005191 2.6e-12 77.0 79 48.1
Gorai.007G342800 Gossypium raimondii HOM05D004239 ORTHO05D005191 2.6e-12 77.0 79 48.1
HanXRQChr09g0259671 Helianthus annuus HOM05D004239 ORTHO05D005191 2.6e-12 77.0 100 44.0
Lsat_1_v5_gn_4_139401 Lactuca sativa HOM05D004239 ORTHO05D005191 2.6e-12 77.0 100 43.0
BcaC03g17788 Brassica carinata HOM05D004239 ORTHO05D005191 3.4e-12 76.6 89 46.1
Carub.0006s2508 Capsella rubella HOM05D004239 ORTHO05D005191 3.4e-12 76.6 87 39.1
Sc09g0003220 Simmondsia chinensis HOM05D004239 ORTHO05D005191 3.4e-12 76.6 82 43.9
TWI36G1635 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 3.4e-12 76.6 82 45.1
Glyma.03G239000 Glycine max HOM05D004239 ORTHO05D005191 4.4e-12 76.3 109 40.4
Glyma.19G236200 Glycine max HOM05D004239 ORTHO05D005191 4.4e-12 76.3 102 41.2
Gorai.007G296000 Gossypium raimondii HOM05D004239 ORTHO05D005191 4.4e-12 76.3 79 45.6
SEGI_00819 Sequoiadendron giganteum HOM05D004239 ORTHO05D005191 4.4e-12 76.3 88 46.6
Duzib106G0174 Durio zibethinus HOM05D004239 ORTHO05D005191 5.8e-12 75.9 79 45.6
Medtr7g113660 Medicago truncatula HOM05D004239 ORTHO05D005191 5.8e-12 75.9 75 49.3
Hund21687 Selenicereus undatus HOM05D004239 ORTHO05D005191 5.8e-12 75.9 82 47.6
MELO3C004281.2 Cucumis melo HOM05D004239 ORTHO05D005191 7.5e-12 75.5 96 42.7
Sabra13G0025600 Salix brachista HOM05D004239 ORTHO05D005191 7.5e-12 75.5 77 51.9
VMungo0540G1286 Vigna mungo HOM05D004239 ORTHO05D005191 7.5e-12 75.5 75 49.3
CANSAT54G0620 Cannabis sativa HOM05D004239 ORTHO05D005191 9.8e-12 75.1 75 48.0
Prupe.6G327600 Prunus persica HOM05D004239 ORTHO05D005191 9.8e-12 75.1 75 49.3
HPP92_020860 Vanilla planifolia HOM05D004239 ORTHO05D005191 9.8e-12 75.1 78 48.7
arahy.Tifrunner.gnm1.ann1.5NK7V3 Arachis hypogaea HOM05D004239 ORTHO05D005191 1.3e-11 74.7 75 49.3
arahy.Tifrunner.gnm1.ann1.VWT09S Arachis hypogaea HOM05D004239 ORTHO05D005191 1.3e-11 74.7 75 49.3
Gohir.D11G274300 Gossypium hirsutum HOM05D004239 ORTHO05D005191 1.3e-11 74.7 79 44.3
TWI12G0310 Tripterygium wilfordii HOM05D004239 ORTHO05D005191 1.3e-11 74.7 101 41.6
vmacro19629 Vaccinium macrocarpon HOM05D004239 ORTHO05D005191 2.2e-11 73.9 91 45.1
Lalb_Chr04g0260811 Lupinus albus HOM05D004239 ORTHO05D005191 2.9e-11 73.6 102 41.2
MD12G1220700 Malus domestica HOM05D004239 ORTHO05D005191 2.9e-11 73.6 75 48.0
Potri.005G035300 Populus trichocarpa HOM05D004239 ORTHO05D005191 2.9e-11 73.6 105 40.0
Sed0007278 Sechium edule HOM05D004239 ORTHO05D005191 2.9e-11 73.6 105 40.0
Thecc.05G305000 Theobroma cacao HOM05D004239 ORTHO05D005191 2.9e-11 73.6 79 44.3
ClCG10G005450 Citrullus lanatus HOM05D004239 ORTHO05D005191 3.7e-11 73.2 77 49.4
DCAR_029425 Daucus carota HOM05D004239 ORTHO05D005191 3.7e-11 73.2 82 46.3
MD04G1206900 Malus domestica HOM05D004239 ORTHO05D005191 3.7e-11 73.2 75 48.0
Migut.N01997 Erythranthe guttata HOM05D004239 ORTHO05D005191 4.9e-11 72.8 94 43.6
Potri.013G024000 Populus trichocarpa HOM05D004239 ORTHO05D005191 4.9e-11 72.8 77 50.6
TPR.G33198 Trifolium pratense HOM05D004239 ORTHO05D005191 4.9e-11 72.8 100 40.0
ECA234G2741 Erigeron canadensis HOM05D004239 ORTHO05D005191 6.4e-11 72.4 82 45.1
SHI18197 Sapria himalayana HOM05D004239 ORTHO05D005191 8.3e-11 72.0 84 47.6
Ca_09364_v3 Cicer arietinum L. HOM05D004239 ORTHO05D005191 1.1e-10 71.6 102 40.2
ATR0561G047 Amborella trichopoda HOM05D004239 ORTHO05D005191 1.4e-10 71.2 102 39.2
SalBow3G0110 Salvia bowleyana HOM05D004239 ORTHO05D005191 1.4e-10 71.2 82 43.9
AUR62005132 Chenopodium quinoa HOM05D004239 ORTHO05D005191 2.4e-10 70.5 82 42.7
RcHm_v2.0_Chr3g0454501 Rosa chinensis HOM05D004239 ORTHO05D005191 2.4e-10 70.5 72 44.4
FvH4_6g05650 Fragaria vesca HOM05D004239 ORTHO05D005191 3.2e-10 70.1 72 44.4
FAN14G2823 Fragaria x ananassa HOM05D004239 ORTHO05D005191 3.2e-10 70.1 72 44.4
Eucgr.B01993 Eucalyptus grandis HOM05D004239 ORTHO05D005191 4.1e-10 69.7 73 46.6
FAN05G5256 Fragaria x ananassa HOM05D004239 ORTHO05D005191 5.4e-10 69.3 72 44.4
Lsat_1_v5_gn_2_64361 Lactuca sativa HOM05D004239 ORTHO05D005191 5.4e-10 69.3 77 46.8
Rhsim05G0142700 Rhododendron simsii HOM05D004239 ORTHO05D005191 7.0e-10 68.9 80 46.2
AUR62000841 Chenopodium quinoa HOM05D004239 ORTHO05D005191 1.6e-09 67.8 76 47.4
CDE02G3721 Ceratophyllum demersum HOM05D004239 ORTHO05D005191 2.0e-09 67.4 81 43.2
unitig_0.g2376 Utricularia gibba HOM05D004239 ORTHO05D005191 2.7e-09 67.0 94 44.7
PGR083G1755 Punica granatum HOM05D004239 ORTHO05D005191 3.0e-08 63.5 71 43.7
AagrBONN_evm.TU.Sc2ySwM_368.2263 Anthoceros agrestis HOM05D004239 ORTHO05D005191 8.6e-08 62.0 89 40.4
Sed0017775 Sechium edule HOM05D004239 ORTHO05D005191 1.1e-07 61.6 99 40.4
Mapoly0214s0007 Marchantia polymorpha HOM05D004239 ORTHO05D005191 7.3e-07 58.9 42 69.0


User provided reference genes

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