Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb193650 Zea mays HOM05D000228 ORTHO05D002228 4.4e-95 351.3 178 100.0
Os02g0766000 Oryza sativa ssp. japonica HOM05D000228 ORTHO05D002228 3.2e-13 79.3 150 43.3
Solyc04g078850.4 Solanum lycopersicum HOM05D000228 ORTHO05D002228 4.8e-09 65.5 101 44.6
Sopen04g032450 Solanum pennellii HOM05D000228 ORTHO05D002228 4.8e-09 65.5 101 44.6
PGSC0003DMG400008012 Solanum tuberosum HOM05D000228 ORTHO05D002228 4.8e-09 65.5 101 45.5
TAR628G1624 Trochodendron aralioides HOM05D000228 ORTHO05D002228 8.2e-09 64.7 91 47.3
Actinidia22634 Actinidia chinensis HOM05D000228 ORTHO05D002228 1.4e-08 63.9 74 52.7
Actinidia23283 Actinidia chinensis HOM05D000228 ORTHO05D002228 1.4e-08 63.9 95 46.3
CiPaw.15G055700 Carya illinoinensis HOM05D000228 ORTHO05D002228 1.8e-08 63.5 40 72.5
Haze_18017 Corylus avellana HOM05D000228 ORTHO05D002228 3.1e-08 62.8 45 66.7
Duzib093G1063 Durio zibethinus HOM05D000228 ORTHO05D002228 3.1e-08 62.8 41 73.2
Lsat_1_v5_gn_6_112221 Lactuca sativa HOM05D000228 ORTHO05D002228 3.1e-08 62.8 86 48.8
Nn1g04844 Nelumbo nucifera HOM05D000228 ORTHO05D002228 4.1e-08 62.4 139 36.7
Nitab4.5_0002760g0040 Nicotiana tabacum HOM05D000228 ORTHO05D002228 5.3e-08 62.0 99 46.5
CsaV3_4G034350 Cucumis sativus L. HOM05D000228 ORTHO05D002228 7.0e-08 61.6 49 63.3
MBI06_g02562_MAGBIO Magnolia biondii HOM05D000228 ORTHO05D002228 7.0e-08 61.6 79 45.6
ATR1102G002 Amborella trichopoda HOM05D000228 ORTHO05D002228 9.1e-08 61.2 59 57.6
CAN.G1030.8 Capsicum annuum HOM05D000228 ORTHO05D002228 9.1e-08 61.2 99 42.4
Hma1.2p1_0360F.1_g135540 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 1.2e-07 60.8 75 49.3
Manes.05G174300 Manihot esculenta HOM05D000228 ORTHO05D002228 1.2e-07 60.8 54 61.1
Thecc.08G006100 Theobroma cacao HOM05D000228 ORTHO05D002228 1.2e-07 60.8 77 46.8
AUR62043209 Chenopodium quinoa HOM05D000228 ORTHO05D002228 1.6e-07 60.5 98 43.9
Duzib116G0299 Durio zibethinus HOM05D000228 ORTHO05D002228 2.0e-07 60.1 43 69.8
Glyma.06G040300 Glycine max HOM05D000228 ORTHO05D002228 2.0e-07 60.1 27 96.3
Lalb_Chr23g0267031 Lupinus albus HOM05D000228 ORTHO05D002228 2.0e-07 60.1 31 87.1
Phvul.009G065400 Phaseolus vulgaris HOM05D000228 ORTHO05D002228 2.0e-07 60.1 41 65.9
VMungo1309G0667 Vigna mungo HOM05D000228 ORTHO05D002228 2.0e-07 60.1 41 65.9
Prupe.1G434700 Prunus persica HOM05D000228 ORTHO05D002228 2.6e-07 59.7 89 46.1
ECA232G4002 Erigeron canadensis HOM05D000228 ORTHO05D002228 3.5e-07 59.3 36 75.0
Gohir.D06G017300 Gossypium hirsutum HOM05D000228 ORTHO05D002228 3.5e-07 59.3 77 49.4
Gorai.010G020200 Gossypium raimondii HOM05D000228 ORTHO05D002228 3.5e-07 59.3 77 49.4
Cpa.g.sc49.25 Carica papaya HOM05D000228 ORTHO05D002228 4.5e-07 58.9 53 62.3
COL.COLO4_26519 Corchorus olitorius HOM05D000531 ORTHO05D000877 4.5e-07 58.9 50 66.0
Hma1.2p1_2046F.1_g312400 Hydrangea macrophylla HOM05D000228 ORTHO05D002228 4.5e-07 58.9 75 48.0
Gohir.A03G076600 Gossypium hirsutum HOM05D000228 ORTHO05D002228 5.9e-07 58.5 46 63.0
Gorai.005G102400 Gossypium raimondii HOM05D000228 ORTHO05D002228 5.9e-07 58.5 51 60.8
Oeu012418.1 Olea europaea HOM05D000228 ORTHO05D002228 5.9e-07 58.5 50 58.0
Psat5g043000 Pisum sativum HOM05D000228 ORTHO05D002228 5.9e-07 58.5 42 66.7
Sed0023264 Sechium edule HOM05D000228 ORTHO05D002228 5.9e-07 58.5 55 58.2
Dinv39311 Davidia involucrata HOM05D000228 ORTHO05D002228 7.7e-07 58.2 105 41.0
Gohir.A06G018900 Gossypium hirsutum HOM05D000228 ORTHO05D002228 7.7e-07 58.2 77 48.1
Lsat_1_v5_gn_4_126140 Lactuca sativa HOM05D000228 ORTHO05D002228 7.7e-07 58.2 77 49.4
MD15G1082000 Malus domestica HOM05D000228 ORTHO05D002228 7.7e-07 58.2 123 37.4
TAR381G1359 Trochodendron aralioides HOM05D000228 ORTHO05D002228 7.7e-07 58.2 50 58.0
AUR62031367 Chenopodium quinoa HOM05D000228 ORTHO05D002228 1.0e-06 57.8 47 63.8
Glyma.04G039200 Glycine max HOM05D000228 ORTHO05D002228 1.0e-06 57.8 27 92.6
Ciclev10002377m.g Citrus clementina HOM05D000228 ORTHO05D002228 1.3e-06 57.4 99 42.4
Cc10_g04080 Coffea canephora HOM05D000228 ORTHO05D002228 1.3e-06 57.4 107 40.2
Dinv35955 Davidia involucrata HOM05D000228 ORTHO05D002228 1.3e-06 57.4 89 47.2
ECA246G0493 Erigeron canadensis HOM05D000228 ORTHO05D002228 1.3e-06 57.4 41 70.7
Gohir.D02G091400 Gossypium hirsutum HOM05D000228 ORTHO05D002228 1.3e-06 57.4 74 48.6
SalBow7G4292 Salvia bowleyana HOM05D000228 ORTHO05D002228 1.3e-06 57.4 26 96.2
Sed0006832 Sechium edule HOM05D000228 ORTHO05D002228 1.3e-06 57.4 28 89.3
Ca_15946_v3 Cicer arietinum L. HOM05D000228 ORTHO05D002228 1.7e-06 57.0 29 82.8
MELO3C016755.2 Cucumis melo HOM05D000228 ORTHO05D002228 1.7e-06 57.0 29 82.8
FvH4_2g34340 Fragaria vesca HOM05D000228 ORTHO05D002228 1.7e-06 57.0 53 60.4
FAN20G0515 Fragaria x ananassa HOM05D000228 ORTHO05D002228 1.7e-06 57.0 53 60.4
FAN27G1478 Fragaria x ananassa HOM05D000228 ORTHO05D002228 1.7e-06 57.0 53 60.4
TWI56G1409 Tripterygium wilfordii HOM05D000228 ORTHO05D002228 1.7e-06 57.0 50 62.0
FAN15G0189 Fragaria x ananassa HOM05D000228 ORTHO05D002228 2.2e-06 56.6 77 48.1
PSO541G1766 Papaver somniferum HOM05D000228 ORTHO05D002228 2.2e-06 56.6 49 57.1
PSO675G4588 Papaver somniferum HOM05D000228 ORTHO05D002228 2.2e-06 56.6 49 57.1
RcHm_v2.0_Chr6g0308021 Rosa chinensis HOM05D000228 ORTHO05D002228 2.2e-06 56.6 67 50.7
EL10As7g23740 Beta vulgaris HOM05D000228 ORTHO05D002228 2.9e-06 56.2 95 43.2
CANSAT25G1965 Cannabis sativa HOM05D000228 ORTHO05D002228 2.9e-06 56.2 27 85.2
DCAR_020926 Daucus carota HOM05D000228 ORTHO05D002228 2.9e-06 56.2 56 60.7
Medtr3g101770 Medicago truncatula HOM05D000228 ORTHO05D002228 2.9e-06 56.2 29 86.2
Nitab4.5_0000287g0230 Nicotiana tabacum HOM05D000228 ORTHO05D002228 2.9e-06 56.2 99 41.4
SGA_v2.0_scaffold28G11775 Striga asiatica HOM05D000228 ORTHO05D002228 2.9e-06 56.2 61 52.5
Carub.0001s3574 Capsella rubella HOM05D000228 ORTHO05D002228 3.8e-06 55.8 97 40.2
Migut.C00573 Erythranthe guttata HOM05D000228 ORTHO05D002228 3.8e-06 55.8 55 54.5
Potri.014G028300 Populus trichocarpa HOM05D000228 ORTHO05D002228 3.8e-06 55.8 39 69.2
Sabra14G0019400 Salix brachista HOM05D000228 ORTHO05D002228 3.8e-06 55.8 39 69.2
Migut.N02711 Erythranthe guttata HOM05D000228 ORTHO05D002228 5.0e-06 55.5 53 56.6
FvH4_2g34360 Fragaria vesca HOM05D000228 ORTHO05D002228 5.0e-06 55.5 74 48.6
Lj1g0007198 Lotus japonicus HOM05D000228 ORTHO05D002228 5.0e-06 55.5 27 88.9
Aqoxy6G01311 Aquilegia oxysepala HOM05D000228 ORTHO05D002228 6.5e-06 55.1 79 44.3
CSS0038859 Camellia sinensis var. sinensis HOM05D000228 ORTHO05D002228 6.5e-06 55.1 102 44.1
CiPaw.07G145400 Carya illinoinensis HOM05D000228 ORTHO05D002228 6.5e-06 55.1 28 85.7
CDE02G4011 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 6.5e-06 55.1 81 44.4
CDE06G0709 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 6.5e-06 55.1 80 41.2
Atru.chr13.702 Acer truncatum HOM05D000228 ORTHO05D002228 8.5e-06 54.7 26 84.6
CDE05G2231 Ceratophyllum demersum HOM05D000228 ORTHO05D002228 8.5e-06 54.7 74 43.2
MD08G1099700 Malus domestica HOM05D000228 ORTHO05D002228 8.5e-06 54.7 139 33.8
Sc02g0007170 Simmondsia chinensis HOM05D000228 ORTHO05D002228 8.5e-06 54.7 105 41.9
HPP92_016720 Vanilla planifolia HOM05D000228 ORTHO05D002228 8.5e-06 54.7 93 44.1


User provided reference genes

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