Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb193610 Zea mays HOM05D006364 ORTHO05D007968 2.6e-36 154.8 77 100.0
Zm00001eb028690 Zea mays HOM05D006364 ORTHO05D007968 1.9e-26 122.1 60 96.7
Zm00001eb418900 Zea mays HOM05D006364 ORTHO05D007968 9.3e-26 119.8 60 95.0
Os12g0566100 Oryza sativa ssp. japonica HOM05D006364 ORTHO05D007968 1.3e-24 115.9 62 83.9
MELO3C006742.2 Cucumis melo HOM05D006364 ORTHO05D007968 4.3e-23 110.9 61 82.0
Glyma.15G136600 Glycine max HOM05D006364 ORTHO05D007968 9.6e-23 109.8 60 85.0
Potri.008G100400 Populus trichocarpa HOM05D006364 ORTHO05D007968 9.6e-23 109.8 60 85.0
Potri.010G152100 Populus trichocarpa HOM05D006364 ORTHO05D007968 9.6e-23 109.8 60 85.0
Glyma.09G031500 Glycine max HOM05D006364 ORTHO05D007968 1.3e-22 109.4 60 85.0
Sed0013937 Sechium edule HOM05D006364 ORTHO05D007968 1.3e-22 109.4 60 81.7
QL06p013601 Quercus lobata HOM05D006364 ORTHO05D007968 1.6e-22 109.0 60 83.3
GSVIVG01017645001 Vitis vinifera HOM05D006364 ORTHO05D007968 1.6e-22 109.0 60 83.3
CsaV3_3G015430 Cucumis sativus L. HOM05D006364 ORTHO05D007968 2.1e-22 108.6 60 81.7
Eucgr.H04093 Eucalyptus grandis HOM05D006364 ORTHO05D007968 2.1e-22 108.6 60 81.7
Cc03_g00390 Coffea canephora HOM05D006364 ORTHO05D007968 2.8e-22 108.2 60 81.7
HanXRQChr09g0252081 Helianthus annuus HOM05D006364 ORTHO05D007968 2.8e-22 108.2 60 81.7
arahy.Tifrunner.gnm1.ann1.28BCJ9 Arachis hypogaea HOM05D006364 ORTHO05D007968 4.8e-22 107.5 60 81.7
arahy.Tifrunner.gnm1.ann1.8W9CKH Arachis hypogaea HOM05D006364 ORTHO05D007968 4.8e-22 107.5 60 81.7
arahy.Tifrunner.gnm1.ann1.ZVI86Q Arachis hypogaea HOM05D006364 ORTHO05D007968 4.8e-22 107.5 60 81.7
Ah.05g176740 Amaranthus hybridus HOM05D006364 ORTHO05D007968 6.3e-22 107.1 60 83.3
CiPaw.01G113600 Carya illinoinensis HOM05D006364 ORTHO05D007968 6.3e-22 107.1 60 81.7
CDE11G0289 Ceratophyllum demersum HOM05D006364 ORTHO05D007968 6.3e-22 107.1 60 80.0
RcHm_v2.0_Chr4g0426541 Rosa chinensis HOM05D006364 ORTHO05D007968 6.3e-22 107.1 60 78.3
Sed0012877 Sechium edule HOM05D006364 ORTHO05D007968 6.3e-22 107.1 60 80.0
Actinidia02518 Actinidia chinensis HOM05D006364 ORTHO05D007968 8.2e-22 106.7 60 81.7
Duzib212G0576 Durio zibethinus HOM05D006364 ORTHO05D007968 1.1e-21 106.3 60 81.7
Gohir.A02G086100 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.1e-21 106.3 60 81.7
Gohir.D02G062300 Gossypium hirsutum HOM05D006364 ORTHO05D007968 1.1e-21 106.3 60 81.7
Gorai.005G070100 Gossypium raimondii HOM05D006364 ORTHO05D007968 1.1e-21 106.3 60 81.7
Thecc.04G308800 Theobroma cacao HOM05D006364 ORTHO05D007968 1.1e-21 106.3 60 81.7
TWI73G0896 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 1.1e-21 106.3 60 81.7
Cpa.g.sc146.52 Carica papaya HOM05D006364 ORTHO05D007968 1.4e-21 105.9 60 80.0
Lalb_Chr18g0058441 Lupinus albus HOM05D006364 ORTHO05D007968 1.4e-21 105.9 60 81.7
Nn3g21850 Nelumbo nucifera HOM05D006364 ORTHO05D007968 1.4e-21 105.9 60 80.0
CANSAT78G0762 Cannabis sativa HOM05D006364 ORTHO05D007968 1.8e-21 105.5 60 80.0
Duzib151G1172 Durio zibethinus HOM05D006364 ORTHO05D007968 2.4e-21 105.1 60 80.0
FvH4_4g21000 Fragaria vesca HOM05D006364 ORTHO05D007968 2.4e-21 105.1 64 76.6
FAN12G1354 Fragaria x ananassa HOM05D000037 ORTHO05D001684 2.4e-21 105.1 64 76.6
TWI09G0430 Tripterygium wilfordii HOM05D006364 ORTHO05D007968 2.4e-21 105.1 60 81.7
COL.COLO4_34533 Corchorus olitorius HOM05D006364 ORTHO05D007968 3.1e-21 104.8 60 81.7
ECA246G0645 Erigeron canadensis HOM05D006364 ORTHO05D007968 3.1e-21 104.8 60 76.7
Lsat_1_v5_gn_6_117381 Lactuca sativa HOM05D006364 ORTHO05D007968 3.1e-21 104.8 60 76.7
Psat1g163400 Pisum sativum HOM05D006364 ORTHO05D007968 3.1e-21 104.8 60 78.3
MSTRG.26303 Avicennia marina HOM05D006364 ORTHO05D007968 4.1e-21 104.4 61 78.7
EL10Ac1g00595 Beta vulgaris HOM05D006364 ORTHO05D007968 4.1e-21 104.4 60 80.0
THA.LOC104820323 Tarenaya hassleriana HOM05D006364 ORTHO05D007968 4.1e-21 104.4 60 78.3
Dinv29542 Davidia involucrata HOM05D006364 ORTHO05D007968 5.3e-21 104.0 62 77.4
Medtr2g032700 Medicago truncatula HOM05D006364 ORTHO05D007968 5.3e-21 104.0 60 75.0
Prupe.1G110000 Prunus persica HOM05D006364 ORTHO05D007968 5.3e-21 104.0 60 80.0
Sc07g0002970 Simmondsia chinensis HOM05D006364 ORTHO05D007968 5.3e-21 104.0 60 80.0
HPP92_017027 Vanilla planifolia HOM05D006364 ORTHO05D007968 5.3e-21 104.0 60 76.7
Lalb_Chr20g0120331 Lupinus albus HOM05D006364 ORTHO05D007968 6.9e-21 103.6 60 80.0
MD16G1140400 Malus domestica HOM05D006364 ORTHO05D007968 9.0e-21 103.2 60 76.7
Nitab4.5_0000152g0370 Nicotiana tabacum HOM05D006364 ORTHO05D007968 9.0e-21 103.2 60 78.3
Nitab4.5_0003130g0060 Nicotiana tabacum HOM05D006364 ORTHO05D007968 9.0e-21 103.2 60 78.3
Hund19242 Selenicereus undatus HOM05D006364 ORTHO05D007968 9.0e-21 103.2 60 80.0
Solyc04g071180.3 Solanum lycopersicum HOM05D006364 ORTHO05D007968 9.0e-21 103.2 60 78.3
Sopen04g027130 Solanum pennellii HOM05D006364 ORTHO05D007968 9.0e-21 103.2 60 78.3
Haze_00814 Corylus avellana HOM05D006364 ORTHO05D007968 1.2e-20 102.8 60 81.7
Migut.B01021 Erythranthe guttata HOM05D006364 ORTHO05D007968 1.5e-20 102.4 60 78.3
Migut.N00017 Erythranthe guttata HOM05D006364 ORTHO05D007968 1.5e-20 102.4 60 78.3
PGR004G1259 Punica granatum HOM05D006364 ORTHO05D007968 1.5e-20 102.4 60 76.7
Peaxi162Scf00126g01328 Petunia axillaris HOM05D006364 ORTHO05D007968 2.0e-20 102.1 60 80.0
Zm00001eb137950 Zea mays HOM05D006364 ORTHO05D007968 2.0e-20 102.1 91 61.5
AL3G30350 Arabidopsis lyrata HOM05D006364 ORTHO05D007968 2.6e-20 101.7 60 78.3
AT3G17300 Arabidopsis thaliana HOM05D006364 ORTHO05D007968 2.6e-20 101.7 60 78.3
Carub.0003s1701 Capsella rubella HOM05D006364 ORTHO05D007968 2.6e-20 101.7 60 78.3
Dinv15615 Davidia involucrata HOM05D006364 ORTHO05D007968 2.6e-20 101.7 60 78.3
Lj6g0013185 Lotus japonicus HOM05D006364 ORTHO05D007968 2.6e-20 101.7 60 80.0
CSS0027206 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 4.5e-20 100.9 60 78.3
AUR62034532 Chenopodium quinoa HOM05D000862 ORTHO05D000943 4.5e-20 100.9 60 76.7
DCAR_026961 Daucus carota HOM05D006364 ORTHO05D007968 5.9e-20 100.5 60 76.7
Phvul.006G121400 Phaseolus vulgaris HOM05D006364 ORTHO05D007968 5.9e-20 100.5 60 78.3
CAN.G175.13 Capsicum annuum HOM05D006364 ORTHO05D007968 7.6e-20 100.1 60 76.7
CAN.G689.14 Capsicum annuum HOM05D006364 ORTHO05D007968 1.0e-19 99.8 60 76.7
CARHR092600 Cardamine hirsuta HOM05D006364 ORTHO05D007968 1.3e-19 99.4 60 75.0
AUR62014465 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.3e-19 99.4 60 75.0
Rhsim02G0000900 Rhododendron simsii HOM05D006364 ORTHO05D007968 1.3e-19 99.4 60 73.3
PGSC0003DMG400008613 Solanum tuberosum HOM05D006364 ORTHO05D007968 1.7e-19 99.0 60 73.3
Lj7E712T1 Lonicera japonica HOM05D006364 ORTHO05D007968 2.2e-19 98.6 54 79.6
Sp3g15490 Schrenkiella parvula HOM05D006364 ORTHO05D007968 2.2e-19 98.6 60 75.0
BcaC01g03770 Brassica carinata HOM05D006364 ORTHO05D007968 2.9e-19 98.2 60 75.0
C03p48760 Brassica napus HOM05D006364 ORTHO05D007968 2.9e-19 98.2 62 72.6
BcaB04g18937 Brassica carinata HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
BcaB04g20848 Brassica carinata HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
BcaC01g03776 Brassica carinata HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
BcaC09g48691 Brassica carinata HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
A01p37010 Brassica napus HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
A03p40140 Brassica napus HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
C01p46890 Brassica napus HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
C03p48710 Brassica napus HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
BolC1t04661H Brassica oleracea HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
BolC3t17152H Brassica oleracea HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
BraA01t03762Z Brassica rapa HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
BraA03t13164Z Brassica rapa HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
Thhalv10021841m.g Eutrema salsugineum HOM05D006364 ORTHO05D007968 3.8e-19 97.8 60 75.0
Actinidia31587 Actinidia chinensis HOM05D006364 ORTHO05D007968 8.5e-19 96.7 60 75.0
CSS0032087 Camellia sinensis var. sinensis HOM05D006364 ORTHO05D007968 8.5e-19 96.7 60 76.7
Hma1.2p1_0013F.1_g008050 Hydrangea macrophylla HOM05D006364 ORTHO05D007968 8.5e-19 96.7 60 73.3
TPR.G30811 Trifolium pratense HOM05D006364 ORTHO05D007968 8.5e-19 96.7 60 71.7
Aa31LG8G4220 Aethionema arabicum HOM05D006364 ORTHO05D007968 1.9e-18 95.5 63 66.7
SHI21779 Sapria himalayana HOM05D006364 ORTHO05D007968 1.9e-18 95.5 60 73.3
Aqoxy2G02602 Aquilegia oxysepala HOM05D006364 ORTHO05D007968 2.5e-18 95.1 62 71.0
PSO210G6302 Papaver somniferum HOM05D006364 ORTHO05D007968 4.2e-18 94.4 60 71.7
PSO761G0417 Papaver somniferum HOM05D006364 ORTHO05D007968 4.2e-18 94.4 60 71.7
unitig_22.g5765 Utricularia gibba HOM05D006364 ORTHO05D007968 9.3e-18 93.2 60 71.7
AUR62036805 Chenopodium quinoa HOM05D000862 ORTHO05D000943 1.3e-14 82.8 96 47.9
ClCG05G006780 Citrullus lanatus HOM05D006364 ORTHO05D007968 3.7e-14 81.3 112 45.5
Hund17201 Selenicereus undatus HOM05D000862 ORTHO05D000943 3.7e-14 81.3 83 54.2
Rhsim04G0245400 Rhododendron simsii HOM05D006364 ORTHO05D007968 1.1e-13 79.7 103 43.7
Manes.03G210000 Manihot esculenta HOM05D006364 ORTHO05D007968 1.8e-13 79.0 60 65.0
Zm00001eb224320 Zea mays HOM05D006364 ORTHO05D007968 6.9e-13 77.0 47 83.0
Pp3c26_11720 Physcomitrium patens HOM05D006364 ORTHO05D007968 1.9e-10 68.9 57 52.6
SalBow4G1453 Salvia bowleyana HOM05D006364 ORTHO05D007968 4.2e-10 67.8 60 58.3
MD13G1146500 Malus domestica HOM05D006364 ORTHO05D007968 9.4e-10 66.6 56 58.9
Cfa015704 Carpinus fangiana HOM05D006364 ORTHO05D007968 1.6e-09 65.9 60 60.0
AagrBONN_evm.TU.Sc2ySwM_368.2196 Anthoceros agrestis HOM05D006364 ORTHO05D007968 4.6e-09 64.3 57 50.9
MBI18_g09661_MAGBIO Magnolia biondii HOM05D006364 ORTHO05D007968 6.1e-09 63.9 90 47.8
SMO196G0146 Selaginella moellendorffii HOM05D006364 ORTHO05D007968 3.9e-08 61.2 45 57.8
SalBow6G4934 Salvia bowleyana HOM05D006364 ORTHO05D007968 1.1e-07 59.7 69 49.3
vmacro07987 Vaccinium macrocarpon HOM05D006364 ORTHO05D007968 4.4e-07 57.8 47 55.3


User provided reference genes

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