Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 7.3e-170 600.5 310 100.0
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 7.3e-130 467.6 319 76.2
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 3.8e-86 322.4 317 56.8
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 7.2e-85 318.2 313 57.8
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 9.4e-85 317.8 324 56.2
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 2.7e-84 316.2 314 56.1
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 4.7e-84 315.5 314 55.4
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 8.0e-84 314.7 310 55.5
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 1.4e-83 313.9 323 56.7
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 2.3e-83 313.2 320 55.9
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 3.0e-83 312.8 304 57.6
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 3.0e-83 312.8 320 56.6
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 3.9e-83 312.4 323 56.0
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 6.7e-83 311.6 311 56.3
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 3.3e-82 309.3 320 53.8
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 4.4e-82 308.9 334 53.0
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 5.7e-82 308.5 312 55.8
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 7.4e-82 308.1 313 55.3
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 9.7e-82 307.8 317 54.9
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 3.7e-81 305.8 324 55.2
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 4.8e-81 305.4 316 55.4
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 4.8e-81 305.4 317 54.3
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 6.3e-81 305.1 315 53.7
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 6.3e-81 305.1 322 53.1
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 8.2e-81 304.7 318 54.4
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 8.2e-81 304.7 315 53.7
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.8e-80 303.5 322 52.5
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 3.1e-80 302.8 309 56.0
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 4.1e-80 302.4 315 53.7
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 5.3e-80 302.0 312 55.1
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 9.1e-80 301.2 309 56.3
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 1.2e-79 300.8 315 54.6
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 1.2e-79 300.8 312 54.5
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 2.0e-79 300.1 315 53.0
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 2.0e-79 300.1 314 52.9
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 4.5e-79 298.9 315 54.9
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.9e-79 298.5 313 54.3
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.9e-79 298.5 326 52.1
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 7.7e-79 298.1 323 55.1
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 1.0e-78 297.7 317 52.4
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 1.7e-78 297.0 321 52.0
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 2.2e-78 296.6 315 53.7
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 2.9e-78 296.2 321 52.6
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 5.0e-78 295.4 326 51.8
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 5.0e-78 295.4 315 52.7
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 6.5e-78 295.0 308 54.2
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 6.5e-78 295.0 308 54.2
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.5e-77 293.9 322 52.2
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 2.5e-77 293.1 319 53.9
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 3.2e-77 292.7 313 53.4
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 3.2e-77 292.7 322 53.4
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.2e-77 292.7 314 53.5
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 3.2e-77 292.7 322 51.6
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 4.2e-77 292.4 320 51.2
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 7.2e-77 291.6 328 51.8
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 7.2e-77 291.6 320 50.9
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 7.2e-77 291.6 314 52.9
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 9.4e-77 291.2 299 54.8
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 9.4e-77 291.2 310 52.9
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 1.2e-76 290.8 312 51.9
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 2.7e-76 289.7 312 51.9
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 4.7e-76 288.9 314 52.9
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 4.7e-76 288.9 352 48.9
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 6.1e-76 288.5 323 51.1
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 8.0e-76 288.1 319 50.8
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 1.0e-75 287.7 317 50.8
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 1.4e-75 287.3 314 51.6
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 2.3e-75 286.6 323 52.3
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 3.0e-75 286.2 313 52.4
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.0e-75 285.8 313 53.0
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 4.0e-75 285.8 313 51.4
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 4.0e-75 285.8 315 50.5
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 6.7e-75 285.0 316 51.3
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 1.2e-74 284.3 317 51.7
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 1.2e-74 284.3 317 51.7
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 1.5e-74 283.9 315 50.5
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 1.5e-74 283.9 257 62.3
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.5e-74 283.9 300 55.7
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.0e-74 283.5 304 52.6
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 3.3e-74 282.7 321 51.4
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 4.4e-74 282.3 315 52.7
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 5.7e-74 282.0 314 51.0
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 5.7e-74 282.0 315 49.8
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 5.7e-74 282.0 315 49.8
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 5.7e-74 282.0 315 49.8
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 5.7e-74 282.0 316 51.9
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 7.5e-74 281.6 319 50.2
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 7.5e-74 281.6 309 53.1
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 9.7e-74 281.2 309 51.8
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.3e-73 280.8 315 49.8
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 3.7e-73 279.3 317 50.8
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 8.2e-73 278.1 307 53.1
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 1.4e-72 277.3 304 51.6
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.4e-72 277.3 364 47.0
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.6e-71 273.9 378 46.0
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 2.0e-71 273.5 326 51.2
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 3.5e-71 272.7 332 48.5
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 5.9e-71 271.9 302 51.3
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 1.7e-70 270.4 285 55.4
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 1.5e-69 267.3 267 55.4
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 9.4e-69 264.6 334 47.3
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 9.4e-69 264.6 379 43.8
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.4e-67 260.8 306 50.7
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.2e-66 257.7 173 72.8
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.2e-66 257.7 320 50.0
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 9.8e-66 254.6 275 52.4
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 7.0e-64 248.4 317 48.9
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 1.0e-62 244.6 308 45.8
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 4.7e-60 235.7 315 45.4
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 4.0e-59 232.6 342 45.3
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 2.6e-58 229.9 270 50.7
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 3.4e-58 229.6 283 50.5
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 8.3e-57 224.9 299 44.8
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 5.2e-51 205.7 317 44.8
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.5e-50 204.1 293 45.1
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 2.6e-50 203.4 320 42.2
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.7e-49 200.7 301 43.9
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 4.3e-45 186.0 193 49.2
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 3.2e-40 169.9 175 50.9
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 1.7e-38 164.1 110 78.2
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 8.3e-33 145.2 105 68.6
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 1.2e-31 141.4 110 64.5
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 4.3e-29 132.9 134 56.0
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 2.8e-28 130.2 240 39.6
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-23 114.8 162 44.4
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.2e-15 88.2 86 48.8
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 4.6e-15 86.3 173 35.8
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 1.9e-13 80.9 202 36.6
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 3.3e-13 80.1 103 48.5
arahy.Tifrunner.gnm1.ann1.032V6W Arachis hypogaea HOM05D005174 ORTHO05D015215 6.2e-12 75.9 71 57.7
arahy.Tifrunner.gnm1.ann1.PAU1NR Arachis hypogaea HOM05D005174 ORTHO05D015215 6.2e-12 75.9 71 57.7
arahy.Tifrunner.gnm1.ann1.RE5YQ2 Arachis hypogaea HOM05D005174 ORTHO05D015215 6.2e-12 75.9 71 57.7
Duzib041G0272 Durio zibethinus HOM05D005174 ORTHO05D015215 5.3e-11 72.8 49 71.4
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 6.9e-11 72.4 53 64.2
arahy.Tifrunner.gnm1.ann1.S56SQA Arachis hypogaea HOM05D005174 ORTHO05D015215 9.0e-11 72.0 67 52.2
arahy.Tifrunner.gnm1.ann1.W2W6PZ Arachis hypogaea HOM05D005174 ORTHO05D015215 1.5e-10 71.2 45 73.3
Potri.002G085700 Populus trichocarpa HOM05D005174 ORTHO05D050453 7.6e-10 68.9 54 61.1
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 2.7e-07 60.5 83 45.8


User provided reference genes

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