Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb193120 Zea mays HOM05D002359 ORTHO05D002394 9.0e-128 460.3 239 100.0
Os02g0778700 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 1.9e-64 250.0 257 59.9
Zm00001eb256950 Zea mays HOM05D002359 ORTHO05D002394 5.0e-62 241.9 254 57.9
Zm00001eb278630 Zea mays HOM05D002359 ORTHO05D002394 1.9e-21 107.1 242 40.5
Os06g0203700 Oryza sativa ssp. japonica HOM05D002359 ORTHO05D002394 3.9e-14 82.8 215 36.3
Sabra06G0169700 Salix brachista HOM05D002359 ORTHO05D002394 1.5e-13 80.9 227 33.0
Gohir.D05G039800 Gossypium hirsutum HOM05D002359 ORTHO05D002394 2.8e-12 76.6 142 33.8
Gohir.D05G039900 Gossypium hirsutum HOM05D002359 ORTHO05D002394 2.8e-12 76.6 142 33.8
Gorai.009G040300 Gossypium raimondii HOM05D002359 ORTHO05D002394 1.1e-11 74.7 142 33.1
Duzib187G0542 Durio zibethinus HOM05D002359 ORTHO05D002394 1.8e-11 73.9 135 40.7
Manes.16G086200 Manihot esculenta HOM05D002359 ORTHO05D002394 3.1e-11 73.2 123 37.4
ATR0598G330 Amborella trichopoda HOM05D002359 ORTHO05D002394 4.1e-11 72.8 155 38.1
Gohir.A05G038300 Gossypium hirsutum HOM05D002359 ORTHO05D002394 6.9e-11 72.0 103 38.8
Sabra18G0046100 Salix brachista HOM05D002359 ORTHO05D002394 6.9e-11 72.0 128 36.7
MSTRG.11633 Avicennia marina HOM05D002359 ORTHO05D002394 9.0e-11 71.6 144 31.2
Lj5g0016863 Lotus japonicus HOM05D002359 ORTHO05D002394 9.0e-11 71.6 102 36.3
Manes.16G095300 Manihot esculenta HOM05D002359 ORTHO05D002394 1.2e-10 71.2 195 31.8
TAR383G0971 Trochodendron aralioides HOM05D002359 ORTHO05D002394 1.5e-10 70.9 140 37.1
MBI19_g44267_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 2.0e-10 70.5 191 30.4
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 2.0e-10 70.5 184 33.7
Actinidia39660 Actinidia chinensis HOM05D002359 ORTHO05D002394 2.6e-10 70.1 202 32.2
EL10Ac2g03763 Beta vulgaris HOM05D002359 ORTHO05D002394 2.6e-10 70.1 174 33.3
Duzib150G0522 Durio zibethinus HOM05D002359 ORTHO05D002394 3.4e-10 69.7 81 43.2
Hund03294 Selenicereus undatus HOM05D002359 ORTHO05D002394 3.4e-10 69.7 216 31.5
TAR626G1645 Trochodendron aralioides HOM05D002359 ORTHO05D002394 4.5e-10 69.3 224 31.2
MSTRG.14086 Avicennia marina HOM05D002359 ORTHO05D002394 5.9e-10 68.9 109 37.6
Cc08_g01070 Coffea canephora HOM05D002359 ORTHO05D002394 5.9e-10 68.9 115 36.5
Duzib168G0434 Durio zibethinus HOM05D002359 ORTHO05D002394 7.7e-10 68.6 198 33.3
TWI32G0832 Tripterygium wilfordii HOM05D002359 ORTHO05D002394 7.7e-10 68.6 211 28.0
Nitab4.5_0003042g0010 Nicotiana tabacum HOM05D002359 ORTHO05D002394 1.0e-09 68.2 131 37.4
CDE04G2528 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 1.3e-09 67.8 127 37.0
Potri.006G219800 Populus trichocarpa HOM05D002359 ORTHO05D002394 1.3e-09 67.8 104 37.5
Potri.018G048100 Populus trichocarpa HOM05D002359 ORTHO05D002394 1.3e-09 67.8 107 37.4
SGA_v2.0_scaffold21G09488 Striga asiatica HOM05D002359 ORTHO05D002394 1.7e-09 67.4 172 32.0
arahy.Tifrunner.gnm1.ann1.8GXM4F Arachis hypogaea HOM05D002359 ORTHO05D002394 2.2e-09 67.0 104 35.6
arahy.Tifrunner.gnm1.ann1.QE00FV Arachis hypogaea HOM05D002359 ORTHO05D002394 2.2e-09 67.0 104 35.6
CiPaw.03G206500 Carya illinoinensis HOM05D002359 ORTHO05D002394 2.2e-09 67.0 189 31.2
SGA_v2.0_scaffold385G50446 Striga asiatica HOM05D002359 ORTHO05D002394 2.2e-09 67.0 181 30.9
TAR624G0910 Trochodendron aralioides HOM05D002359 ORTHO05D002394 2.2e-09 67.0 158 34.2
CiPaw.04G143200 Carya illinoinensis HOM05D002359 ORTHO05D002394 2.9e-09 66.6 209 32.5
TPR.G13173 Trifolium pratense HOM05D002359 ORTHO05D002394 2.9e-09 66.6 121 31.4
Duzib150G0040 Durio zibethinus HOM05D002359 ORTHO05D002394 3.8e-09 66.2 105 40.0
Thecc.09G064500 Theobroma cacao HOM05D002359 ORTHO05D002394 3.8e-09 66.2 140 34.3
MSTRG.1709 Avicennia marina HOM05D002359 ORTHO05D002394 5.0e-09 65.9 105 38.1
CANSAT56G1230 Cannabis sativa HOM05D002359 ORTHO05D002394 5.0e-09 65.9 126 36.5
CDE06G0156 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 5.0e-09 65.9 101 42.6
COL.COLO4_21151 Corchorus olitorius HOM05D002359 ORTHO05D002394 5.0e-09 65.9 99 38.4
MBI19_g43891_MAGBIO Magnolia biondii HOM05D002359 ORTHO05D002394 5.0e-09 65.9 240 30.4
Nitab4.5_0000446g0060 Nicotiana tabacum HOM05D002359 ORTHO05D002394 5.0e-09 65.9 131 36.6
Aqoxy7G01038 Aquilegia oxysepala HOM05D002359 ORTHO05D002394 6.5e-09 65.5 85 44.7
Dinv25559 Davidia involucrata HOM05D002359 ORTHO05D002394 6.5e-09 65.5 102 41.2
Gohir.A05G033800 Gossypium hirsutum HOM05D002359 ORTHO05D002394 6.5e-09 65.5 102 42.2
Gohir.D05G035200 Gossypium hirsutum HOM05D002359 ORTHO05D002394 6.5e-09 65.5 102 42.2
Gorai.009G035700 Gossypium raimondii HOM05D002359 ORTHO05D002394 6.5e-09 65.5 102 42.2
QL11p000753 Quercus lobata HOM05D002359 ORTHO05D002394 6.5e-09 65.5 199 32.7
Cfa017864 Carpinus fangiana HOM05D002359 ORTHO05D002394 8.5e-09 65.1 136 32.4
Ciclev10008999m.g Citrus clementina HOM05D002359 ORTHO05D002394 8.5e-09 65.1 105 37.1
Ciclev10009592m.g Citrus clementina HOM05D002359 ORTHO05D002394 8.5e-09 65.1 118 36.4
Cc06_g12170 Coffea canephora HOM05D002359 ORTHO05D002394 8.5e-09 65.1 217 27.2
Migut.J00926 Erythranthe guttata HOM05D002359 ORTHO05D002394 8.5e-09 65.1 101 39.6
Cfa002989 Carpinus fangiana HOM05D002359 ORTHO05D002394 1.1e-08 64.7 105 41.0
Hma1.2p1_0179F.1_g079530 Hydrangea macrophylla HOM05D002359 ORTHO05D002394 1.1e-08 64.7 104 37.5
CDE06G0466 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 1.4e-08 64.3 106 40.6
Gohir.A07G015000 Gossypium hirsutum HOM05D002359 ORTHO05D002394 1.4e-08 64.3 206 32.5
Haze_18306 Corylus avellana HOM05D002359 ORTHO05D002394 1.9e-08 63.9 177 30.5
TWI34G1691 Tripterygium wilfordii HOM05D002359 ORTHO05D002394 1.9e-08 63.9 204 32.4
TAR636G1796 Trochodendron aralioides HOM05D002359 ORTHO05D002394 1.9e-08 63.9 211 30.8
GSVIVG01015083001 Vitis vinifera HOM05D002359 ORTHO05D002394 1.9e-08 63.9 105 38.1
arahy.Tifrunner.gnm1.ann1.GLDH4J Arachis hypogaea HOM05D002359 ORTHO05D002394 2.5e-08 63.5 183 32.8
Sc18g0002550 Simmondsia chinensis HOM05D002359 ORTHO05D002394 2.5e-08 63.5 109 35.8
Lalb_Chr14g0366431 Lupinus albus HOM05D002359 ORTHO05D002394 3.2e-08 63.2 189 26.5
Gohir.D06G079400 Gossypium hirsutum HOM05D002359 ORTHO05D002394 4.2e-08 62.8 105 38.1
Gorai.010G092500 Gossypium raimondii HOM05D002359 ORTHO05D002394 4.2e-08 62.8 105 38.1
Oeu010312.1 Olea europaea HOM05D002359 ORTHO05D002394 4.2e-08 62.8 106 40.6
Sp6g23250 Schrenkiella parvula HOM05D002359 ORTHO05D002394 4.2e-08 62.8 126 33.3
Cpa.g.sc28.40 Carica papaya HOM05D002359 ORTHO05D002394 5.5e-08 62.4 97 41.2
AUR62020594 Chenopodium quinoa HOM05D002359 ORTHO05D002394 5.5e-08 62.4 141 34.8
SGA_v2.0_scaffold163G37996 Striga asiatica HOM05D002359 ORTHO05D002394 5.5e-08 62.4 107 34.6
Thecc.09G076900 Theobroma cacao HOM05D002359 ORTHO05D002394 5.5e-08 62.4 220 30.5
vmacro06341 Vaccinium macrocarpon HOM05D002359 ORTHO05D002394 5.5e-08 62.4 221 35.3
Manes.03G053700 Manihot esculenta HOM05D002359 ORTHO05D002394 7.2e-08 62.0 111 36.9
Medtr1g015650 Medicago truncatula HOM05D002359 ORTHO05D002394 7.2e-08 62.0 83 36.1
QL02p017163 Quercus lobata HOM05D002359 ORTHO05D002394 7.2e-08 62.0 208 30.8
THA.LOC104815089 Tarenaya hassleriana HOM05D002359 ORTHO05D002394 7.2e-08 62.0 108 38.0
FvH4_2g30890 Fragaria vesca HOM05D002359 ORTHO05D002394 9.4e-08 61.6 118 32.2
FAN24G0235 Fragaria x ananassa HOM05D002359 ORTHO05D002394 9.4e-08 61.6 118 32.2
MD15G1217500 Malus domestica HOM05D002359 ORTHO05D002394 9.4e-08 61.6 112 36.6
Oeu003969.1 Olea europaea HOM05D002359 ORTHO05D002394 9.4e-08 61.6 162 34.0
Peaxi162Scf00486g00045 Petunia axillaris HOM05D002359 ORTHO05D002394 9.4e-08 61.6 109 36.7
PGSC0003DMG400013007 Solanum tuberosum HOM05D002359 ORTHO05D002394 9.4e-08 61.6 181 30.4
TWI63G1697 Tripterygium wilfordii HOM05D002359 ORTHO05D002394 9.4e-08 61.6 174 37.4
arahy.Tifrunner.gnm1.ann1.S73L53 Arachis hypogaea HOM05D002359 ORTHO05D002394 1.2e-07 61.2 93 33.3
Ca_13116_v3 Cicer arietinum L. HOM05D002359 ORTHO05D002394 1.2e-07 61.2 107 32.7
ClCG05G015790 Citrullus lanatus HOM05D002359 ORTHO05D002394 1.2e-07 61.2 94 38.3
Gohir.D07G014700 Gossypium hirsutum HOM05D002359 ORTHO05D002394 1.2e-07 61.2 206 32.0
Sed0009145 Sechium edule HOM05D002359 ORTHO05D002394 1.2e-07 61.2 136 32.4
A03p10470 Brassica napus HOM05D002359 ORTHO05D002394 1.6e-07 60.8 126 33.3
BraA03t10359Z Brassica rapa HOM05D002359 ORTHO05D002394 1.6e-07 60.8 126 33.3
Duzib168G0700 Durio zibethinus HOM05D002359 ORTHO05D002394 1.6e-07 60.8 105 37.1
Gorai.001G015500 Gossypium raimondii HOM05D002359 ORTHO05D002394 1.6e-07 60.8 182 33.0
Sed0023350 Sechium edule HOM05D002359 ORTHO05D002394 1.6e-07 60.8 107 36.4
arahy.Tifrunner.gnm1.ann1.V7S84L Arachis hypogaea HOM05D002359 ORTHO05D002394 2.1e-07 60.5 93 33.3
Duzib187G0643 Durio zibethinus HOM05D002359 ORTHO05D002394 2.1e-07 60.5 84 38.1
RcHm_v2.0_Chr2g0094921 Rosa chinensis HOM05D002359 ORTHO05D002394 2.1e-07 60.5 204 33.3
HPP92_016200 Vanilla planifolia HOM05D002359 ORTHO05D002394 2.1e-07 60.5 105 39.0
Cpa.g.sc126.12 Carica papaya HOM05D002359 ORTHO05D002394 2.7e-07 60.1 107 33.6
CDE07G1514 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 2.7e-07 60.1 130 35.4
MELO3C016917.2 Cucumis melo HOM05D002359 ORTHO05D002394 2.7e-07 60.1 76 42.1
CsaV3_4G036090 Cucumis sativus L. HOM05D002359 ORTHO05D002394 2.7e-07 60.1 76 42.1
Hma1.2p1_0169F.1_g074530 Hydrangea macrophylla HOM05D002359 ORTHO05D002394 2.7e-07 60.1 105 38.1
Glyma.06G056600 Glycine max HOM05D002359 ORTHO05D002394 3.6e-07 59.7 108 35.2
RcHm_v2.0_Chr6g0311951 Rosa chinensis HOM05D002359 ORTHO05D002394 3.6e-07 59.7 142 29.6
Gohir.A06G079800 Gossypium hirsutum HOM05D002359 ORTHO05D002394 4.6e-07 59.3 103 36.9
Psat6g021760 Pisum sativum HOM05D002359 ORTHO05D002394 4.6e-07 59.3 107 29.9
SalBow6G4243 Salvia bowleyana HOM05D002359 ORTHO05D002394 4.6e-07 59.3 193 29.5
Thhalv10014420m.g Eutrema salsugineum HOM05D002359 ORTHO05D002394 6.1e-07 58.9 100 36.0
FvH4_1g08640 Fragaria vesca HOM05D002359 ORTHO05D002394 6.1e-07 58.9 204 31.4
FAN19G2477 Fragaria x ananassa HOM05D002359 ORTHO05D002394 6.1e-07 58.9 204 31.4
Glyma.13G110500 Glycine max HOM05D002359 ORTHO05D002394 6.1e-07 58.9 190 29.5
Haze_26012 Corylus avellana HOM05D002359 ORTHO05D002394 7.9e-07 58.5 127 35.4
FAN26G3160 Fragaria x ananassa HOM05D002359 ORTHO05D002394 7.9e-07 58.5 73 45.2
PSO135G0093 Papaver somniferum HOM05D002359 ORTHO05D002394 7.9e-07 58.5 73 46.6
PSO724G0250 Papaver somniferum HOM05D002359 ORTHO05D002394 7.9e-07 58.5 73 46.6
HPP92_028260 Vanilla planifolia HOM05D002359 ORTHO05D002394 7.9e-07 58.5 105 36.2
CARHR191590 Cardamine hirsuta HOM05D002359 ORTHO05D002394 1.0e-06 58.2 96 34.4
FAN28G0571 Fragaria x ananassa HOM05D002359 ORTHO05D002394 1.0e-06 58.2 204 31.9
Lj4A912T26 Lonicera japonica HOM05D002359 ORTHO05D002394 1.0e-06 58.2 206 29.6
Prupe.7G199000 Prunus persica HOM05D002359 ORTHO05D002394 1.0e-06 58.2 119 35.3
Rhsim03G0227600 Rhododendron simsii HOM05D002359 ORTHO05D002394 1.0e-06 58.2 201 33.8
SalBow4G0745 Salvia bowleyana HOM05D002359 ORTHO05D002394 1.0e-06 58.2 105 32.4
unitig_578.g16407 Utricularia gibba HOM05D002359 ORTHO05D002394 1.0e-06 58.2 105 36.2
FAN27G0989 Fragaria x ananassa HOM05D002359 ORTHO05D002394 1.4e-06 57.8 118 31.4
Atru.chr7.1837 Acer truncatum HOM05D002359 ORTHO05D002394 1.8e-06 57.4 191 33.0
Carub.0006s1958 Capsella rubella HOM05D002359 ORTHO05D002394 1.8e-06 57.4 128 30.5
Lalb_Chr08g0244771 Lupinus albus HOM05D002359 ORTHO05D002394 1.8e-06 57.4 83 38.6
THA.LOC104810954 Tarenaya hassleriana HOM05D002359 ORTHO05D002394 1.8e-06 57.4 71 42.3
BcaB05g22762 Brassica carinata HOM05D002359 ORTHO05D002394 2.3e-06 57.0 79 38.0
BcaC01g06619 Brassica carinata HOM05D002359 ORTHO05D002394 2.3e-06 57.0 112 33.9
BcaC09g49292 Brassica carinata HOM05D002359 ORTHO05D002394 2.3e-06 57.0 92 39.1
C01p40500 Brassica napus HOM05D002359 ORTHO05D002394 2.3e-06 57.0 92 39.1
BolC3t13675H Brassica oleracea HOM05D002359 ORTHO05D002394 2.3e-06 57.0 112 33.9
DCAR_003719 Daucus carota HOM05D002359 ORTHO05D002394 2.3e-06 57.0 114 36.0
Migut.A00067 Erythranthe guttata HOM05D002359 ORTHO05D002394 2.3e-06 57.0 107 33.6
FAN23G0242 Fragaria x ananassa HOM05D002359 ORTHO05D002394 2.3e-06 57.0 204 31.4
Psat5g030080 Pisum sativum HOM05D002359 ORTHO05D002394 2.3e-06 57.0 108 34.3
unitig_8.g4685 Utricularia gibba HOM05D002359 ORTHO05D002394 2.3e-06 57.0 79 36.7
BcaB01g04754 Brassica carinata HOM05D002359 ORTHO05D002394 3.0e-06 56.6 118 34.7
A01p31650 Brassica napus HOM05D002359 ORTHO05D002394 3.0e-06 56.6 72 44.4
C03p12050 Brassica napus HOM05D002359 ORTHO05D002394 3.0e-06 56.6 112 33.9
BolC1t04003H Brassica oleracea HOM05D002359 ORTHO05D002394 3.0e-06 56.6 92 39.1
BraA01t03294Z Brassica rapa HOM05D002359 ORTHO05D002394 3.0e-06 56.6 72 44.4
CANSAT25G2850 Cannabis sativa HOM05D002359 ORTHO05D002394 3.0e-06 56.6 105 33.3
COL.COLO4_18098 Corchorus olitorius HOM05D002359 ORTHO05D002394 3.0e-06 56.6 84 36.9
BcaB08g36465 Brassica carinata HOM05D002359 ORTHO05D002394 3.9e-06 56.2 103 33.0
BcaB08g36467 Brassica carinata HOM05D002359 ORTHO05D002394 3.9e-06 56.2 103 33.0
FAN26G2408 Fragaria x ananassa HOM05D002359 ORTHO05D002394 3.9e-06 56.2 106 39.6
Glyma.14G098200 Glycine max HOM05D002359 ORTHO05D002394 3.9e-06 56.2 103 31.1
Peaxi162Scf00127g01910 Petunia axillaris HOM05D002359 ORTHO05D002394 3.9e-06 56.2 176 28.4
AL6G32900 Arabidopsis lyrata HOM05D002359 ORTHO05D002394 5.1e-06 55.8 117 31.6
Lj4g0014317 Lotus japonicus HOM05D002359 ORTHO05D002394 5.1e-06 55.8 110 38.2
Nitab4.5_0000024g0200 Nicotiana tabacum HOM05D002359 ORTHO05D002394 5.1e-06 55.8 190 30.0
Prupe.1G403400 Prunus persica HOM05D002359 ORTHO05D002394 5.1e-06 55.8 75 42.7
Sopen07g021290 Solanum pennellii HOM05D002359 ORTHO05D002394 5.1e-06 55.8 162 30.9
BcaC03g13845 Brassica carinata HOM05D002359 ORTHO05D002394 6.7e-06 55.5 78 38.5
BolC2t07119H Brassica oleracea HOM05D002359 ORTHO05D002394 6.7e-06 55.5 78 38.5
MD08G1072700 Malus domestica HOM05D002359 ORTHO05D002394 6.7e-06 55.5 107 33.6
Nitab4.5_0002562g0010 Nicotiana tabacum HOM05D001119 ORTHO05D000862 6.7e-06 55.5 124 33.9
Phvul.001G037900 Phaseolus vulgaris HOM05D002359 ORTHO05D002394 6.7e-06 55.5 113 33.6
TPR.G3512 Trifolium pratense HOM05D002359 ORTHO05D002394 6.7e-06 55.5 105 29.5
VMungo0647G0789 Vigna mungo HOM05D002359 ORTHO05D002394 6.7e-06 55.5 128 29.7
AT5G21940 Arabidopsis thaliana HOM05D002359 ORTHO05D002394 8.8e-06 55.1 91 34.1
Eucgr.C00733 Eucalyptus grandis HOM05D002359 ORTHO05D002394 8.8e-06 55.1 219 28.3
MD15G1049100 Malus domestica HOM05D002359 ORTHO05D002394 8.8e-06 55.1 109 32.1
Manes.16G086300 Manihot esculenta HOM05D002359 ORTHO05D002394 8.8e-06 55.1 114 33.3
Rhsim05G0007600 Rhododendron simsii HOM05D001119 ORTHO05D000862 8.8e-06 55.1 174 32.2


User provided reference genes

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