Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb192800 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 2265.0 1125 100.0
Zm00001eb257250 Zea mays HOM05D004297 ORTHO05D005213 0.0e+00 2157.9 1125 94.8
Os02g0786000 Oryza sativa ssp. japonica HOM05D004297 ORTHO05D005213 0.0e+00 2028.4 1125 88.8
TAR629G2795 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1607.0 1124 70.9
PSO063G5582 Papaver somniferum HOM05D004297 ORTHO05D005213 0.0e+00 1577.0 1122 69.8
Aqoxy5G04078 Aquilegia oxysepala HOM05D004297 ORTHO05D005213 0.0e+00 1572.8 1123 70.2
Nn6g33322 Nelumbo nucifera HOM05D004297 ORTHO05D005213 0.0e+00 1553.1 1120 69.0
Dinv43843 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1552.7 1121 69.3
Cfa003893 Carpinus fangiana HOM05D004297 ORTHO05D005213 0.0e+00 1549.6 1129 68.8
Actinidia10047 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1548.9 1123 68.4
TAR636G0349 Trochodendron aralioides HOM05D004297 ORTHO05D005213 0.0e+00 1548.5 1077 71.0
Manes.01G254400 Manihot esculenta HOM05D004297 ORTHO05D005213 0.0e+00 1548.1 1133 69.3
PGR042G3632 Punica granatum HOM05D004297 ORTHO05D005213 0.0e+00 1543.9 1121 69.0
CiPaw.02G033500 Carya illinoinensis HOM05D004297 ORTHO05D005213 0.0e+00 1543.1 1128 68.9
CANSAT56G3337 Cannabis sativa HOM05D004297 ORTHO05D005213 0.0e+00 1542.7 1124 68.8
Actinidia20884 Actinidia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1541.6 1121 68.2
MSTRG.17286 Avicennia marina HOM05D004297 ORTHO05D005213 0.0e+00 1540.4 1125 68.5
Cc02_g38370 Coffea canephora HOM05D004297 ORTHO05D005213 0.0e+00 1540.4 1121 68.5
QL04p054287 Quercus lobata HOM05D004297 ORTHO05D005213 0.0e+00 1540.0 1138 68.5
RcHm_v2.0_Chr7g0221211 Rosa chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1539.6 1127 68.8
GSVIVG01026995001 Vitis vinifera HOM05D004297 ORTHO05D005213 0.0e+00 1539.6 1126 68.5
Potri.014G087900 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1537.7 1123 68.9
Medtr7g078170 Medicago truncatula HOM05D004297 ORTHO05D005213 0.0e+00 1536.5 1129 68.5
Migut.B01779 Erythranthe guttata HOM05D004297 ORTHO05D005213 0.0e+00 1535.0 1125 68.1
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1534.2 1122 68.8
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea HOM05D004297 ORTHO05D005213 0.0e+00 1534.2 1122 68.8
Gorai.001G159200 Gossypium raimondii HOM05D004297 ORTHO05D005213 0.0e+00 1533.1 1125 68.4
Prupe.2G174200 Prunus persica HOM05D004297 ORTHO05D005213 0.0e+00 1532.3 1119 68.4
Glyma.09G256700 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1531.5 1128 68.1
Atru.chr5.535 Acer truncatum HOM05D004297 ORTHO05D005213 0.0e+00 1530.8 1121 68.5
VMungo1383G1290 Vigna mungo HOM05D004297 ORTHO05D005213 0.0e+00 1530.8 1129 67.6
Gohir.A07G141200 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1530.4 1121 68.1
FvH4_5g28900 Fragaria vesca HOM05D004297 ORTHO05D005213 0.0e+00 1529.6 1132 68.4
Cpa.g.sc11.37 Carica papaya HOM05D004297 ORTHO05D005213 0.0e+00 1528.8 1097 69.4
Sopen01g038660 Solanum pennellii HOM05D004297 ORTHO05D005213 0.0e+00 1526.5 1127 68.3
Glyma.18G235800 Glycine max HOM05D004297 ORTHO05D005213 0.0e+00 1526.1 1128 68.2
Thecc.01G355600 Theobroma cacao HOM05D004297 ORTHO05D005213 0.0e+00 1526.1 1120 68.0
TPR.G37786 Trifolium pratense HOM05D004297 ORTHO05D005213 0.0e+00 1525.8 1131 68.1
Lj9C586G6 Lonicera japonica HOM05D004297 ORTHO05D005213 0.0e+00 1525.4 1121 69.0
Solyc01g094880.3 Solanum lycopersicum HOM05D004297 ORTHO05D005213 0.0e+00 1525.0 1126 68.2
CAN.G78.102 Capsicum annuum HOM05D004297 ORTHO05D005213 0.0e+00 1523.1 1126 68.1
Eucgr.E00109 Eucalyptus grandis HOM05D004297 ORTHO05D005213 0.0e+00 1523.1 1130 68.0
Lalb_Chr03g0038271 Lupinus albus HOM05D004297 ORTHO05D005213 0.0e+00 1523.1 1122 68.1
Lj1g0026001 Lotus japonicus HOM05D004297 ORTHO05D005213 0.0e+00 1522.3 1125 67.8
Potri.002G162000 Populus trichocarpa HOM05D004297 ORTHO05D005213 0.0e+00 1521.5 1121 68.2
FAN18G0188 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1521.1 1143 67.7
TWI59G0377 Tripterygium wilfordii HOM05D004297 ORTHO05D005213 0.0e+00 1520.4 1127 68.7
Duzib133G0964 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1516.9 1121 67.4
Oeu036598.1 Olea europaea HOM05D004297 ORTHO05D005213 0.0e+00 1516.9 1146 66.2
SalBow3G3037 Salvia bowleyana HOM05D004297 ORTHO05D005213 0.0e+00 1513.4 1122 67.7
SGA_v2.0_scaffold78G25411 Striga asiatica HOM05D004297 ORTHO05D005213 0.0e+00 1513.0 1130 67.1
FAN13G2415 Fragaria x ananassa HOM05D004297 ORTHO05D005213 0.0e+00 1511.1 1133 67.9
Hund27256 Selenicereus undatus HOM05D004297 ORTHO05D005213 0.0e+00 1508.8 1122 67.1
CSS0008006 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 0.0e+00 1507.7 1126 67.1
Ciclev10018597m.g Citrus clementina HOM05D004297 ORTHO05D005213 0.0e+00 1504.2 1127 67.4
ATR0661G292 Amborella trichopoda HOM05D004297 ORTHO05D005213 0.0e+00 1500.0 1124 67.3
DCAR_006941 Daucus carota HOM05D004297 ORTHO05D005213 0.0e+00 1494.9 1125 66.2
Gohir.D07G146700 Gossypium hirsutum HOM05D004297 ORTHO05D005213 0.0e+00 1494.9 1125 66.9
Sabra14G0063700 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1490.7 1181 65.2
ECA236G0245 Erigeron canadensis HOM05D004297 ORTHO05D005213 0.0e+00 1489.2 1117 66.3
HanXRQChr04g0121341 Helianthus annuus HOM05D004297 ORTHO05D005213 0.0e+00 1487.2 1121 66.3
Phvul.008G060200 Phaseolus vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1480.7 1097 68.4
MELO3C021189.2 Cucumis melo HOM05D004297 ORTHO05D005213 0.0e+00 1479.5 1125 66.2
CsaV3_6G000810 Cucumis sativus L. HOM05D004297 ORTHO05D005213 0.0e+00 1476.1 1124 65.9
Nitab4.5_0000583g0330 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1475.3 1194 63.7
EL10Ac1g00379 Beta vulgaris HOM05D004297 ORTHO05D005213 0.0e+00 1470.7 1119 65.9
Sed0013986 Sechium edule HOM05D004297 ORTHO05D005213 0.0e+00 1470.7 1123 65.8
Lsat_1_v5_gn_7_3220 Lactuca sativa HOM05D004297 ORTHO05D005213 0.0e+00 1467.2 1118 65.7
Nitab4.5_0006942g0020 Nicotiana tabacum HOM05D004297 ORTHO05D005213 0.0e+00 1465.3 1164 64.9
THA.LOC104817308 Tarenaya hassleriana HOM05D004297 ORTHO05D005213 0.0e+00 1464.9 1129 65.6
Thhalv10005756m.g Eutrema salsugineum HOM05D004297 ORTHO05D005213 0.0e+00 1458.4 1129 64.7
AT3G61480 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1450.3 1127 64.7
Peaxi162Scf00020g01027 Petunia axillaris HOM05D004297 ORTHO05D005213 0.0e+00 1447.6 1080 67.5
ClCG06G003500 Citrullus lanatus HOM05D004297 ORTHO05D005213 0.0e+00 1446.4 1189 63.1
AL5G43840 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1443.3 1130 64.3
Rhsim07G0012700 Rhododendron simsii HOM05D004297 ORTHO05D005213 0.0e+00 1440.6 1316 58.5
AT5G28350 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 0.0e+00 1439.5 1130 64.2
Duzib138G1153 Durio zibethinus HOM05D004297 ORTHO05D005213 0.0e+00 1432.5 1120 65.0
C08p36360 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1425.6 1137 63.5
BolC8t51219H Brassica oleracea HOM05D004297 ORTHO05D005213 0.0e+00 1425.6 1137 63.5
Carub.0005s2817 Capsella rubella HOM05D004297 ORTHO05D005213 0.0e+00 1425.6 1131 63.5
A09p53530 Brassica napus HOM05D004297 ORTHO05D005213 0.0e+00 1410.6 1138 63.0
BraA09t40777Z Brassica rapa HOM05D004297 ORTHO05D005213 0.0e+00 1410.6 1138 63.0
Sabra02G0129100 Salix brachista HOM05D004297 ORTHO05D005213 0.0e+00 1408.7 1250 59.5
MD11G1239500 Malus domestica HOM05D004297 ORTHO05D005213 0.0e+00 1403.7 1039 67.4
unitig_749.g14347 Utricularia gibba HOM05D004297 ORTHO05D005213 0.0e+00 1391.3 1144 62.4
Ca_00827_v3 Cicer arietinum L. HOM05D000005 ORTHO05D005213 0.0e+00 1380.5 959 72.1
Aa31LG1G27480 Aethionema arabicum HOM05D004297 ORTHO05D005213 0.0e+00 1369.4 1149 61.6
Dinv32504 Davidia involucrata HOM05D004297 ORTHO05D005213 0.0e+00 1362.8 1148 62.4
Haze_15540 Corylus avellana HOM05D004297 ORTHO05D005213 0.0e+00 1360.5 1129 62.2
Sc23g0002720 Simmondsia chinensis HOM05D004297 ORTHO05D005213 0.0e+00 1329.7 866 75.6
BcaC07g40648 Brassica carinata HOM05D004297 ORTHO05D005213 0.0e+00 1328.9 1134 60.7
vmacro13256 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 0.0e+00 1317.0 1164 60.2
AUR62022597 Chenopodium quinoa HOM05D004297 ORTHO05D005213 0.0e+00 1297.0 1156 59.3
Psat3g107280 Pisum sativum HOM05D004297 ORTHO05D005213 0.0e+00 1266.1 826 76.3
CARHR171820 Cardamine hirsuta HOM05D004297 ORTHO05D005213 0.0e+00 1255.4 855 71.8
AL5G43780 Arabidopsis lyrata HOM05D004297 ORTHO05D005213 0.0e+00 1247.3 1114 58.6
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1244.2 833 72.5
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla HOM05D004297 ORTHO05D005213 0.0e+00 1238.4 829 72.7
Mapoly0027s0035 Marchantia polymorpha HOM05D004297 ORTHO05D005213 0.0e+00 1111.7 1143 52.1
CiPaw.01G064500 Carya illinoinensis HOM05D004297 ORTHO05D005213 6.9e-311 1070.8 684 77.9
SMO367G0176 Selaginella moellendorffii HOM05D004297 ORTHO05D005213 1.3e-301 1040.0 1122 50.6
Sed0025112 Sechium edule HOM05D004297 ORTHO05D005213 2.6e-294 1015.8 1127 49.3
Sp5g01920 Schrenkiella parvula HOM05D004297 ORTHO05D005213 2.7e-291 1005.7 821 60.8
Pp3c2_4880 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.8e-282 974.2 1146 47.1
FAN08G3284 Fragaria x ananassa HOM05D004297 ORTHO05D005213 1.2e-278 963.8 792 61.0
Pp3c14_21590 Physcomitrium patens HOM05D004297 ORTHO05D005213 8.2e-272 941.0 1146 46.1
CBR_g36279 Chara braunii HOM05D004297 ORTHO05D005213 1.4e-258 897.1 1398 38.5
SHI13402 Sapria himalayana HOM05D004297 ORTHO05D005213 9.8e-249 864.4 1523 37.4
COL.COLO4_12744 Corchorus olitorius HOM05D004297 ORTHO05D005213 7.8e-238 828.2 526 79.7
CSS0030491 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 6.0e-230 802.0 585 70.8
CDE04G2307 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 3.3e-228 796.2 682 57.9
MD01G1067900 Malus domestica HOM05D004297 ORTHO05D005213 1.0e-205 721.5 674 56.8
CDE04G3641 Ceratophyllum demersum HOM05D004297 ORTHO05D005213 2.3e-197 693.7 436 81.0
AUR62004390 Chenopodium quinoa HOM05D004297 ORTHO05D005213 6.4e-192 675.6 736 48.1
Psat0ss4650g0200 Pisum sativum HOM05D004297 ORTHO05D005213 9.6e-188 661.8 552 61.4
HPP92_012694 Vanilla planifolia HOM05D004297 ORTHO05D005213 4.1e-178 629.8 589 54.3
Oeu039184.1 Olea europaea HOM05D004297 ORTHO05D005213 1.5e-164 584.7 450 62.7
SEGI_29424 Sequoiadendron giganteum HOM05D004297 ORTHO05D000001 4.8e-163 579.7 420 66.2
AUR62004391 Chenopodium quinoa HOM05D004297 ORTHO05D005213 2.0e-129 468.0 373 68.9
Peaxi162Scf41243g00005 Petunia axillaris HOM05D004297 ORTHO05D005213 1.3e-115 422.2 327 71.3
Psat7g148560 Pisum sativum HOM05D004297 ORTHO05D005213 3.2e-114 417.5 308 65.3
MCO14G315 Micromonas commoda HOM05D004297 ORTHO05D005213 5.4e-106 390.2 1111 28.8
COL.COLO4_12743 Corchorus olitorius HOM05D004297 ORTHO05D005213 5.8e-92 343.6 450 40.0
PRCOL_00000293 Prasinoderma coloniale HOM05D004297 ORTHO05D005213 2.3e-88 331.6 773 31.6
Cre12.g506650 Chlamydomonas reinhardtii HOM05D004297 ORTHO05D005213 9.3e-82 309.7 1081 25.2
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis HOM05D004297 ORTHO05D005213 4.6e-81 307.4 290 55.5
HPP92_012670 Vanilla planifolia HOM05D004297 ORTHO05D005213 6.2e-78 297.0 240 69.2
HPP92_012695 Vanilla planifolia HOM05D004297 ORTHO05D005213 5.1e-72 277.3 179 74.9
MD01G1068000 Malus domestica HOM05D004297 ORTHO05D005213 1.1e-63 249.6 199 70.4
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis HOM05D004297 ORTHO05D005213 3.4e-52 211.5 318 40.6
TAR629G3312 Trochodendron aralioides HOM05D004297 ORTHO05D005213 2.0e-47 195.7 212 49.5
BolC6t37919H Brassica oleracea HOM05D004297 ORTHO05D005213 4.1e-45 188.0 212 55.2
CSS0029755 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 1.5e-44 186.0 594 30.1
C06p27520 Brassica napus HOM05D004297 ORTHO05D005213 8.5e-43 180.3 212 51.9
Sc23g0002730 Simmondsia chinensis HOM05D004297 ORTHO05D005213 1.2e-41 176.4 173 46.2
Cfa026409 Carpinus fangiana HOM05D004297 ORTHO05D005213 1.6e-41 176.0 729 23.9
BcaC07g42689 Brassica carinata HOM05D004297 ORTHO05D005213 1.7e-38 166.0 170 48.2
SEGI_39496 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 5.9e-36 157.5 224 40.2
Lsat_1_v5_gn_9_9281 Lactuca sativa HOM05D004297 ORTHO05D005213 5.5e-34 151.0 328 37.2
Rhsim06G0128600 Rhododendron simsii HOM05D000263 ORTHO05D000213 7.2e-34 150.6 192 49.5
vmacro23481 Vaccinium macrocarpon HOM05D004297 ORTHO05D005213 2.1e-33 149.1 294 33.0
Ah.05g180350 Amaranthus hybridus HOM05D004297 ORTHO05D005213 3.7e-30 138.3 206 35.9
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea HOM05D004297 ORTHO05D005213 2.7e-28 132.1 84 78.6
MD11G1239400 Malus domestica HOM05D004297 ORTHO05D005213 7.7e-28 130.6 79 83.5
SEGI_34049 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 7.2e-26 124.0 85 76.5
Cc02_g24300 Coffea canephora HOM05D004297 ORTHO05D005213 3.0e-24 118.6 192 35.4
Rhsim06G0126700 Rhododendron simsii HOM05D000263 ORTHO05D000213 5.5e-18 97.8 161 41.0
Cpa.g.sc11.39 Carica papaya HOM05D004297 ORTHO05D005213 1.2e-17 96.7 65 69.2
RcHm_v2.0_Chr1g0356921 Rosa chinensis HOM05D004297 ORTHO05D005213 2.4e-13 82.4 64 67.2
SEGI_01640 Sequoiadendron giganteum HOM05D004297 ORTHO05D005213 1.6e-12 79.7 85 41.2
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea HOM05D004297 ORTHO05D005213 2.0e-12 79.3 59 67.8
RcHm_v2.0_Chr1g0356901 Rosa chinensis HOM05D004297 ORTHO05D005213 2.0e-12 79.3 95 48.4
CSS0014634 Camellia sinensis var. sinensis HOM05D004297 ORTHO05D005213 3.5e-12 78.6 150 38.0
Rhsim06G0128400 Rhododendron simsii HOM05D000263 ORTHO05D000213 1.0e-11 77.0 56 69.6
RcHm_v2.0_Chr1g0356891 Rosa chinensis HOM05D004297 ORTHO05D005213 5.0e-11 74.7 44 70.5
Rhsim12G0103300 Rhododendron simsii HOM05D004297 ORTHO05D339569 1.5e-10 73.2 161 32.3
Lsat_1_v5_gn_4_49241 Lactuca sativa HOM05D004297 ORTHO05D005213 4.7e-09 68.2 56 51.8
AT5G28442 Arabidopsis thaliana HOM05D004297 ORTHO05D005213 5.2e-08 64.7 73 49.3
arahy.Tifrunner.gnm1.ann1.19V8U8 Arachis hypogaea HOM05D000005 ORTHO05D000012 6.8e-08 64.3 74 48.6
RcHm_v2.0_Chr1g0356911 Rosa chinensis HOM05D004297 ORTHO05D005213 1.5e-07 63.2 34 73.5
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea HOM05D004297 ORTHO05D005213 4.4e-07 61.6 45 68.9
CARHR057240 Cardamine hirsuta HOM05D004297 ORTHO05D005213 4.4e-07 61.6 64 46.9
VMungo0464G0057 Vigna mungo HOM05D004297 ORTHO05D005213 3.7e-06 58.5 55 45.5


User provided reference genes

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