Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb192560 Zea mays HOM05D006886 ORTHO05D008494 9.3e-81 303.5 157 100.0
Os01g0766400 Oryza sativa ssp. japonica HOM05D006886 ORTHO05D008494 4.4e-46 188.3 157 60.5
PSO063G3428 Papaver somniferum HOM05D006886 ORTHO05D008494 2.8e-29 132.5 150 39.3
PGSC0003DMG400026287 Solanum tuberosum HOM05D006886 ORTHO05D008494 2.8e-29 132.5 146 45.9
Sopen08g002580 Solanum pennellii HOM05D006886 ORTHO05D008494 3.7e-29 132.1 146 45.9
Oeu010292.1 Olea europaea HOM05D006886 ORTHO05D008494 4.8e-29 131.7 146 45.2
Solyc08g006630.3 Solanum lycopersicum HOM05D006886 ORTHO05D008494 6.3e-29 131.3 146 45.9
Nitab4.5_0000264g0070 Nicotiana tabacum HOM05D006886 ORTHO05D008494 8.2e-29 131.0 144 45.1
Dinv03403 Davidia involucrata HOM05D006886 ORTHO05D008494 2.4e-28 129.4 145 42.8
PSO782G0555 Papaver somniferum HOM05D006886 ORTHO05D008494 3.1e-28 129.0 150 38.0
Cc08_g07710 Coffea canephora HOM05D006886 ORTHO05D008494 5.3e-28 128.3 153 39.9
Hma1.2p1_0355F.1_g133950 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 3.5e-27 125.6 144 43.1
ECA246G1281 Erigeron canadensis HOM05D006886 ORTHO05D008494 4.5e-27 125.2 145 43.4
Lsat_1_v5_gn_3_22560 Lactuca sativa HOM05D006886 ORTHO05D008494 4.5e-27 125.2 145 43.4
CAN.G285.18 Capsicum annuum HOM05D006886 ORTHO05D008494 5.9e-27 124.8 146 43.2
CiPaw.07G233000 Carya illinoinensis HOM05D006886 ORTHO05D008494 1.3e-26 123.6 146 39.7
Rhsim02G0217500 Rhododendron simsii HOM05D006886 ORTHO05D008494 1.3e-26 123.6 145 40.7
EL10Ac2g02461 Beta vulgaris HOM05D006886 ORTHO05D008494 2.2e-26 122.9 146 40.4
Hund25607 Selenicereus undatus HOM05D006886 ORTHO05D008494 2.2e-26 122.9 146 40.4
Actinidia22280 Actinidia chinensis HOM05D006886 ORTHO05D008494 3.8e-26 122.1 146 38.4
Migut.A00389 Erythranthe guttata HOM05D006886 ORTHO05D008494 3.8e-26 122.1 146 43.8
SGA_v2.0_scaffold27G11627 Striga asiatica HOM05D006886 ORTHO05D008494 3.8e-26 122.1 146 43.8
MSTRG.11790 Avicennia marina HOM05D006886 ORTHO05D008494 5.0e-26 121.7 146 42.5
MD08G1052100 Malus domestica HOM05D006886 ORTHO05D008494 6.5e-26 121.3 147 41.5
HanXRQChr17g0536351 Helianthus annuus HOM05D006886 ORTHO05D008494 8.5e-26 120.9 143 43.4
Cpa.g.sc148.45 Carica papaya HOM05D006886 ORTHO05D008494 1.1e-25 120.6 153 39.9
Duzib168G1824 Durio zibethinus HOM05D006886 ORTHO05D008494 1.1e-25 120.6 146 41.1
MD15G1043400 Malus domestica HOM05D006886 ORTHO05D008494 1.9e-25 119.8 147 41.5
COL.COLO4_18973 Corchorus olitorius HOM05D006886 ORTHO05D008494 4.2e-25 118.6 145 39.3
ATR0580G343 Amborella trichopoda HOM05D006886 ORTHO05D008494 5.5e-25 118.2 140 42.9
Lj7A737T48 Lonicera japonica HOM05D006886 ORTHO05D008494 7.2e-25 117.9 147 41.5
MBI15_g26075_MAGBIO Magnolia biondii HOM05D006886 ORTHO05D008494 7.2e-25 117.9 174 36.2
TWI63G0132 Tripterygium wilfordii HOM05D006886 ORTHO05D008494 9.4e-25 117.5 145 40.0
Aqoxy7G03293 Aquilegia oxysepala HOM05D006886 ORTHO05D008494 2.7e-24 115.9 148 38.5
QL02p018037 Quercus lobata HOM05D006886 ORTHO05D008494 3.6e-24 115.5 147 39.5
Cfa013010 Carpinus fangiana HOM05D006886 ORTHO05D008494 4.7e-24 115.2 147 39.5
Duzib187G0928 Durio zibethinus HOM05D006886 ORTHO05D008494 1.0e-23 114.0 153 35.9
Prupe.1G396800 Prunus persica HOM05D006886 ORTHO05D008494 1.0e-23 114.0 121 43.0
RcHm_v2.0_Chr6g0299191 Rosa chinensis HOM05D006886 ORTHO05D008494 1.0e-23 114.0 146 38.4
Ah.15g098740 Amaranthus hybridus HOM05D006886 ORTHO05D008494 1.8e-23 113.2 148 39.2
Eucgr.F04206 Eucalyptus grandis HOM05D006886 ORTHO05D008494 1.8e-23 113.2 157 36.3
Gohir.A07G033700 Gossypium hirsutum HOM05D006886 ORTHO05D008494 1.8e-23 113.2 145 39.3
Haze_21375 Corylus avellana HOM05D006886 ORTHO05D008494 3.0e-23 112.5 146 38.4
CANSAT25G2371 Cannabis sativa HOM05D006886 ORTHO05D008494 4.0e-23 112.1 148 36.5
Nn2g12469 Nelumbo nucifera HOM05D006886 ORTHO05D008494 4.0e-23 112.1 125 42.4
CDE04G0647 Ceratophyllum demersum HOM05D006886 ORTHO05D008494 5.2e-23 111.7 143 39.2
Sc17g0004260 Simmondsia chinensis HOM05D006886 ORTHO05D008494 5.2e-23 111.7 148 40.5
PGR042G1056 Punica granatum HOM05D006886 ORTHO05D008494 6.8e-23 111.3 145 37.9
TAR625G1053 Trochodendron aralioides HOM05D006886 ORTHO05D008494 6.8e-23 111.3 117 42.7
CSS0014970 Camellia sinensis var. sinensis HOM05D006886 ORTHO05D008494 1.2e-22 110.5 118 44.9
CsaV3_4G036380 Cucumis sativus L. HOM05D006886 ORTHO05D008494 1.2e-22 110.5 148 37.8
Lj5g0011023 Lotus japonicus HOM05D006886 ORTHO05D008494 1.2e-22 110.5 146 38.4
Ciclev10010834m.g Citrus clementina HOM05D006886 ORTHO05D008494 2.0e-22 109.8 144 36.8
Sed0006692 Sechium edule HOM05D006886 ORTHO05D008494 2.0e-22 109.8 147 37.4
THA.LOC104819952 Tarenaya hassleriana HOM05D006886 ORTHO05D008494 9.8e-22 107.5 145 38.6
Glyma.14G104300 Glycine max HOM05D006886 ORTHO05D008494 1.3e-21 107.1 147 40.1
Potri.018G016300 Populus trichocarpa HOM05D006886 ORTHO05D008494 2.2e-21 106.3 148 35.8
Thecc.09G013300 Theobroma cacao HOM05D006886 ORTHO05D008494 2.2e-21 106.3 126 38.9
FAN27G2382 Fragaria x ananassa HOM05D006886 ORTHO05D008494 2.8e-21 105.9 120 40.0
vmacro11273 Vaccinium macrocarpon HOM05D006886 ORTHO05D008494 2.8e-21 105.9 168 33.9
Atru.chr7.2575 Acer truncatum HOM05D006886 ORTHO05D008494 3.7e-21 105.5 148 35.1
A09p55990 Brassica napus HOM05D006886 ORTHO05D008494 3.7e-21 105.5 146 38.4
A09p56060 Brassica napus HOM05D006886 ORTHO05D008494 3.7e-21 105.5 146 38.4
BraA09t41001Z Brassica rapa HOM05D006886 ORTHO05D008494 3.7e-21 105.5 146 38.4
Actinidia14002 Actinidia chinensis HOM05D006886 ORTHO05D008494 4.8e-21 105.1 147 35.4
Thhalv10000363m.g Eutrema salsugineum HOM05D006886 ORTHO05D008494 6.3e-21 104.8 146 39.0
Dinv16422 Davidia involucrata HOM05D006886 ORTHO05D008494 8.3e-21 104.4 111 43.2
AUR62032440 Chenopodium quinoa HOM05D006886 ORTHO05D008494 1.1e-20 104.0 168 32.7
Gorai.001G038900 Gossypium raimondii HOM05D006886 ORTHO05D008494 1.1e-20 104.0 120 41.7
Manes.16G132100 Manihot esculenta HOM05D006886 ORTHO05D008494 1.1e-20 104.0 142 37.3
AL4G16050 Arabidopsis lyrata HOM05D006886 ORTHO05D008494 1.4e-20 103.6 146 38.4
arahy.Tifrunner.gnm1.ann1.QF2P07 Arachis hypogaea HOM05D006886 ORTHO05D008494 1.4e-20 103.6 145 40.0
Glyma.17G221700 Glycine max HOM05D006886 ORTHO05D008494 1.4e-20 103.6 147 38.8
Phvul.001G042700 Phaseolus vulgaris HOM05D006886 ORTHO05D008494 1.4e-20 103.6 146 37.7
TPR.G38843 Trifolium pratense HOM05D006886 ORTHO05D008494 1.4e-20 103.6 147 38.8
AT2G24970 Arabidopsis thaliana HOM05D006886 ORTHO05D008494 3.1e-20 102.4 145 40.0
Carub.0004s0454 Capsella rubella HOM05D006886 ORTHO05D008494 5.4e-20 101.7 147 37.4
AUR62024781 Chenopodium quinoa HOM05D006886 ORTHO05D008494 5.4e-20 101.7 117 41.9
Sp4g03960 Schrenkiella parvula HOM05D006886 ORTHO05D008494 7.0e-20 101.3 146 37.7
CARHR116750 Cardamine hirsuta HOM05D006886 ORTHO05D008494 2.0e-19 99.8 144 36.1
Medtr1g013640 Medicago truncatula HOM05D006886 ORTHO05D008494 2.0e-19 99.8 147 38.1
Sabra18G0019800 Salix brachista HOM05D006886 ORTHO05D008494 2.0e-19 99.8 158 34.2
VMungo0647G1481 Vigna mungo HOM05D006886 ORTHO05D008494 1.0e-18 97.4 122 40.2
FvH4_2g41341 Fragaria vesca HOM05D006886 ORTHO05D008494 1.3e-18 97.1 132 35.6
C08p38980 Brassica napus HOM05D006886 ORTHO05D008494 2.3e-18 96.3 146 37.0
FAN15G0524 Fragaria x ananassa HOM05D006886 ORTHO05D008494 2.9e-18 95.9 112 40.2
arahy.Tifrunner.gnm1.ann1.5WK6RP Arachis hypogaea HOM05D006886 ORTHO05D008494 1.9e-17 93.2 119 39.5
BcaC07g40900 Brassica carinata HOM05D006886 ORTHO05D008494 2.5e-17 92.8 143 37.1
BolC8t51472H Brassica oleracea HOM05D006886 ORTHO05D008494 2.5e-17 92.8 143 37.1
Nitab4.5_0001362g0050 Nicotiana tabacum HOM05D006886 ORTHO05D008494 4.2e-17 92.0 98 44.9
Ca_13077_v3 Cicer arietinum L. HOM05D006886 ORTHO05D008494 7.2e-17 91.3 165 33.3
BcaB08g35125 Brassica carinata HOM05D006886 ORTHO05D008494 9.5e-17 90.9 121 40.5
Psat6g024960 Pisum sativum HOM05D006886 ORTHO05D008494 1.2e-16 90.5 146 33.6
Lalb_Chr14g0361721 Lupinus albus HOM05D006886 ORTHO05D008494 4.7e-16 88.6 142 31.0
Pp3c17_11010 Physcomitrium patens HOM05D006886 ORTHO05D008494 1.4e-15 87.0 124 37.1
AagrBONN_evm.TU.Sc2ySwM_344.4138 Anthoceros agrestis HOM05D006886 ORTHO05D008494 3.0e-15 85.9 117 35.9
ClCG05G016110 Citrullus lanatus HOM05D006886 ORTHO05D008494 8.9e-15 84.3 149 34.9
Peaxi162Scf00045g01941 Petunia axillaris HOM05D006886 ORTHO05D008494 5.7e-14 81.6 146 35.6
Aa31sc83G60 Aethionema arabicum HOM05D006886 ORTHO05D008494 2.2e-13 79.7 104 38.5
Mapoly0034s0101 Marchantia polymorpha HOM05D006886 ORTHO05D008494 4.9e-13 78.6 117 35.0
Pp3c14_9080 Physcomitrium patens HOM05D006886 ORTHO05D008494 1.4e-12 77.0 103 37.9
SHI21090 Sapria himalayana HOM05D006886 ORTHO05D008494 2.4e-12 76.3 93 40.9
RcHm_v2.0_Chr7g0186961 Rosa chinensis HOM05D006886 ORTHO05D008494 1.7e-10 70.1 86 38.4
Gohir.D07G037233 Gossypium hirsutum HOM05D006886 ORTHO05D008494 5.0e-10 68.6 71 46.5
Hma1.2p1_0355F.1_g133940 Hydrangea macrophylla HOM05D006886 ORTHO05D008494 6.6e-10 68.2 69 49.3
MELO3C032323.2 Cucumis melo HOM05D006886 ORTHO05D008494 2.5e-09 66.2 70 42.9
GSVIVG01036003001 Vitis vinifera HOM05D006886 ORTHO05D008494 2.5e-09 66.2 74 43.2
GSVIVG01036001001 Vitis vinifera HOM05D006886 ORTHO05D008494 2.1e-08 63.2 76 36.8
Cfa023326 Carpinus fangiana HOM05D006886 ORTHO05D008494 6.1e-08 61.6 83 37.3
MD05G1059000 Malus domestica HOM05D006886 ORTHO05D008494 4.0e-07 58.9 68 39.7
SalBow4G1854 Salvia bowleyana HOM05D006886 ORTHO05D008494 4.0e-07 58.9 78 42.3
Cfa001083 Carpinus fangiana HOM05D006886 ORTHO05D008494 2.0e-06 56.6 148 26.4


User provided reference genes

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