Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb192470 Zea mays HOM05D004328 ORTHO05D005210 8.3e-162 573.5 272 100.0
Os07g0413800 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 1.7e-122 443.0 237 86.1
Zm00001eb062050 Zea mays HOM05D004328 ORTHO05D005210 1.6e-109 399.8 263 71.9
Os10g0516400 Oryza sativa ssp. japonica HOM05D004328 ORTHO05D005210 3.7e-109 398.7 239 75.3
CiPaw.05G212500 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.0e-99 366.3 249 67.1
Sed0006415 Sechium edule HOM05D004328 ORTHO05D005210 7.7e-99 364.4 248 67.3
THA.LOC104805717 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.3e-98 363.6 236 69.9
BraA07t30899Z Brassica rapa HOM05D004328 ORTHO05D005210 2.2e-98 362.8 236 69.1
CAN.G438.47 Capsicum annuum HOM05D004328 ORTHO05D005210 2.9e-98 362.5 228 71.9
Peaxi162Scf00015g00027 Petunia axillaris HOM05D004328 ORTHO05D005210 2.9e-98 362.5 237 68.8
Nn3g21153 Nelumbo nucifera HOM05D004328 ORTHO05D005210 3.8e-98 362.1 246 67.1
A07p32730 Brassica napus HOM05D004328 ORTHO05D005210 6.5e-98 361.3 242 66.9
Ciclev10032525m.g Citrus clementina HOM05D004328 ORTHO05D005210 1.1e-97 360.5 240 67.9
Sopen03g039300 Solanum pennellii HOM05D004328 ORTHO05D005210 1.1e-97 360.5 236 70.3
BcaB05g24072 Brassica carinata HOM05D004328 ORTHO05D005210 1.4e-97 360.1 235 68.5
Cc01_g03290 Coffea canephora HOM05D004328 ORTHO05D005210 1.4e-97 360.1 237 67.5
BcaB03g15334 Brassica carinata HOM05D004328 ORTHO05D005210 1.9e-97 359.8 236 68.6
C06p38940 Brassica napus HOM05D004328 ORTHO05D005210 1.9e-97 359.8 236 68.6
BolC6t38986H Brassica oleracea HOM05D004328 ORTHO05D005210 1.9e-97 359.8 236 68.6
Hund00585 Selenicereus undatus HOM05D004328 ORTHO05D005210 1.9e-97 359.8 238 68.5
THA.LOC104823797 Tarenaya hassleriana HOM05D004328 ORTHO05D005210 1.9e-97 359.8 242 66.9
Sabra11G0102700 Salix brachista HOM05D004328 ORTHO05D005210 2.5e-97 359.4 229 68.6
PGSC0003DMG400002634 Solanum tuberosum HOM05D004328 ORTHO05D005210 2.5e-97 359.4 229 71.6
Nitab4.5_0002424g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.2e-97 358.6 237 68.8
SalBow2G3162 Salvia bowleyana HOM05D004328 ORTHO05D005210 4.2e-97 358.6 243 66.7
Sed0022403 Sechium edule HOM05D004328 ORTHO05D005210 5.5e-97 358.2 232 69.4
TWI60G0134 Tripterygium wilfordii HOM05D004328 ORTHO05D005210 5.5e-97 358.2 231 68.0
unitig_21.g20512 Utricularia gibba HOM05D004328 ORTHO05D005210 5.5e-97 358.2 231 69.7
PSO063G4889 Papaver somniferum HOM05D004328 ORTHO05D005210 7.2e-97 357.8 230 68.3
A02p12950 Brassica napus HOM05D004328 ORTHO05D005210 9.4e-97 357.5 237 67.9
Duzib177G0674 Durio zibethinus HOM05D004328 ORTHO05D005210 9.4e-97 357.5 236 67.4
PSO135G0870 Papaver somniferum HOM05D004328 ORTHO05D005210 9.4e-97 357.5 229 67.7
BraA02t06349Z Brassica rapa HOM05D004328 ORTHO05D005210 1.2e-96 357.1 237 67.5
Thhalv10019022m.g Eutrema salsugineum HOM05D004328 ORTHO05D005210 1.6e-96 356.7 252 64.7
Nn8g40188 Nelumbo nucifera HOM05D004328 ORTHO05D005210 1.6e-96 356.7 232 69.4
Nitab4.5_0000862g0040 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.6e-96 356.7 237 68.8
HPP92_014971 Vanilla planifolia HOM05D004328 ORTHO05D005210 2.1e-96 356.3 233 69.1
BcaB03g15336 Brassica carinata HOM05D004328 ORTHO05D005210 2.7e-96 355.9 241 68.0
Duzib128G0566 Durio zibethinus HOM05D004328 ORTHO05D005210 2.7e-96 355.9 236 66.9
Thecc.05G223000 Theobroma cacao HOM05D004328 ORTHO05D005210 2.7e-96 355.9 232 68.1
Sp5g19300 Schrenkiella parvula HOM05D004328 ORTHO05D005210 3.6e-96 355.5 240 67.1
SGA_v2.0_scaffold117G32383 Striga asiatica HOM05D004328 ORTHO05D005210 3.6e-96 355.5 232 69.4
MBI04_g30767_MAGBIO Magnolia biondii HOM05D004328 ORTHO05D005210 4.7e-96 355.1 238 65.1
Nitab4.5_0003848g0010 Nicotiana tabacum HOM05D004328 ORTHO05D005210 4.7e-96 355.1 244 65.6
PSO384G1513 Papaver somniferum HOM05D004328 ORTHO05D005210 4.7e-96 355.1 229 67.2
CDE02G2329 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 6.1e-96 354.8 243 65.4
Gohir.A08G221646 Gossypium hirsutum HOM05D004328 ORTHO05D005210 7.9e-96 354.4 239 65.7
Lj9P505T43 Lonicera japonica HOM05D004328 ORTHO05D005210 7.9e-96 354.4 234 68.8
unitig_744.g24340 Utricularia gibba HOM05D004328 ORTHO05D005210 7.9e-96 354.4 235 67.7
COL.COLO4_15130 Corchorus olitorius HOM05D004328 ORTHO05D005210 1.0e-95 354.0 227 70.0
Gohir.D08G240500 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.0e-95 354.0 232 66.8
Gorai.004G255800 Gossypium raimondii HOM05D004328 ORTHO05D005210 1.0e-95 354.0 232 66.8
MELO3C003305.2 Cucumis melo HOM05D004328 ORTHO05D005210 1.4e-95 353.6 232 68.1
DCAR_007553 Daucus carota HOM05D004328 ORTHO05D005210 1.4e-95 353.6 246 65.4
Glyma.12G014400 Glycine max HOM05D004328 ORTHO05D005210 1.4e-95 353.6 231 68.0
AL2G19530 Arabidopsis lyrata HOM05D004328 ORTHO05D005210 1.8e-95 353.2 241 66.0
AT1G64980 Arabidopsis thaliana HOM05D004328 ORTHO05D005210 1.8e-95 353.2 241 65.6
CARHR056380 Cardamine hirsuta HOM05D004328 ORTHO05D005210 1.8e-95 353.2 231 67.5
Nitab4.5_0008539g0020 Nicotiana tabacum HOM05D004328 ORTHO05D005210 1.8e-95 353.2 237 66.2
Potri.011G117500 Populus trichocarpa HOM05D004328 ORTHO05D005210 1.8e-95 353.2 229 68.6
MSTRG.11095 Avicennia marina HOM05D004328 ORTHO05D005210 2.3e-95 352.8 238 67.2
CiPaw.06G036200 Carya illinoinensis HOM05D004328 ORTHO05D005210 2.3e-95 352.8 241 65.6
Manes.09G129900 Manihot esculenta HOM05D004328 ORTHO05D005210 2.3e-95 352.8 240 65.8
PSO782G5014 Papaver somniferum HOM05D004328 ORTHO05D005210 2.3e-95 352.8 230 67.4
vmacro16940 Vaccinium macrocarpon HOM05D004328 ORTHO05D005210 2.3e-95 352.8 229 68.1
PSO675G2272 Papaver somniferum HOM05D004328 ORTHO05D005210 3.0e-95 352.4 228 68.4
Sabra19G0052600 Salix brachista HOM05D004328 ORTHO05D005210 3.0e-95 352.4 229 69.4
Sc10g0005470 Simmondsia chinensis HOM05D004328 ORTHO05D005210 3.0e-95 352.4 235 67.7
CSS0022667 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.9e-95 352.1 240 67.1
HanXRQChr09g0275421 Helianthus annuus HOM05D004328 ORTHO05D005210 3.9e-95 352.1 236 67.8
Medtr5g007050 Medicago truncatula HOM05D004328 ORTHO05D005210 3.9e-95 352.1 243 65.0
Psat2g189640 Pisum sativum HOM05D004328 ORTHO05D005210 3.9e-95 352.1 231 67.5
PGR102G1437 Punica granatum HOM05D004328 ORTHO05D005210 3.9e-95 352.1 246 64.6
Aqoxy3G03943 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 5.1e-95 351.7 230 68.3
Carub.0002s1013 Capsella rubella HOM05D004328 ORTHO05D005210 5.1e-95 351.7 240 66.2
Aa31LG2G2180 Aethionema arabicum HOM05D004328 ORTHO05D005210 6.7e-95 351.3 244 64.3
EL10Ac9g21975 Beta vulgaris HOM05D004328 ORTHO05D005210 6.7e-95 351.3 235 67.2
Oeu014856.1 Olea europaea HOM05D004328 ORTHO05D005210 8.8e-95 350.9 244 65.2
C02p21060 Brassica napus HOM05D004328 ORTHO05D005210 1.1e-94 350.5 234 66.7
Migut.I00840 Erythranthe guttata HOM05D004328 ORTHO05D005210 1.1e-94 350.5 234 67.1
Eucgr.F02577 Eucalyptus grandis HOM05D004328 ORTHO05D005210 1.1e-94 350.5 236 67.4
Manes.08G160500 Manihot esculenta HOM05D004328 ORTHO05D005210 1.1e-94 350.5 238 66.0
Medtr6g046960 Medicago truncatula HOM05D004328 ORTHO05D005210 1.1e-94 350.5 230 67.4
ECA234G3285 Erigeron canadensis HOM05D004328 ORTHO05D005210 1.5e-94 350.1 234 68.4
BcaC03g14669 Brassica carinata HOM05D004328 ORTHO05D005210 2.0e-94 349.7 234 66.7
BolC2t08247H Brassica oleracea HOM05D004328 ORTHO05D005210 2.0e-94 349.7 234 66.7
Lsat_1_v5_gn_4_104460 Lactuca sativa HOM05D004328 ORTHO05D005210 2.0e-94 349.7 232 68.5
Lalb_Chr09g0320061 Lupinus albus HOM05D004328 ORTHO05D005210 2.0e-94 349.7 250 64.4
TPR.G37879 Trifolium pratense HOM05D004328 ORTHO05D005210 2.0e-94 349.7 231 66.2
ATR0829G052 Amborella trichopoda HOM05D004328 ORTHO05D005210 2.6e-94 349.4 238 63.9
ECA232G0498 Erigeron canadensis HOM05D004328 ORTHO05D005210 2.6e-94 349.4 255 65.5
Oeu022420.1 Olea europaea HOM05D004328 ORTHO05D005210 2.6e-94 349.4 245 64.9
PSO384G3958 Papaver somniferum HOM05D004328 ORTHO05D005210 2.6e-94 349.4 229 67.2
Potri.019G042500 Populus trichocarpa HOM05D004328 ORTHO05D005210 3.3e-94 349.0 238 66.4
PGSC0003DMG400016515 Solanum tuberosum HOM05D004328 ORTHO05D005210 5.7e-94 348.2 243 65.4
Hma1.2p1_0682F.1_g202590 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 7.4e-94 347.8 232 68.5
TAR629G0545 Trochodendron aralioides HOM05D004328 ORTHO05D005210 7.4e-94 347.8 246 63.4
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 9.7e-94 347.4 243 63.8
CAN.G395.24 Capsicum annuum HOM05D004328 ORTHO05D005210 9.7e-94 347.4 232 68.1
Rhsim12G0195900 Rhododendron simsii HOM05D004328 ORTHO05D005210 9.7e-94 347.4 229 67.7
Hma1.2p1_0317F.1_g123230 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 1.3e-93 347.1 231 66.7
Peaxi162Scf00207g00087 Petunia axillaris HOM05D004328 ORTHO05D005210 1.3e-93 347.1 233 68.2
Sopen06g025090 Solanum pennellii HOM05D004328 ORTHO05D005210 1.3e-93 347.1 238 66.4
Actinidia28583 Actinidia chinensis HOM05D004328 ORTHO05D005210 1.7e-93 346.7 232 65.9
MSTRG.4726 Avicennia marina HOM05D004328 ORTHO05D005210 1.7e-93 346.7 231 66.2
Prupe.2G050300 Prunus persica HOM05D004328 ORTHO05D005210 1.7e-93 346.7 241 65.1
SHI15002 Sapria himalayana HOM05D004328 ORTHO05D005210 1.7e-93 346.7 233 68.2
SEGI_26076 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 1.7e-93 346.7 231 67.5
Ca_24428_v3 Cicer arietinum L. HOM05D004328 ORTHO05D005210 2.2e-93 346.3 229 67.2
SalBow2G0585 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.2e-93 346.3 236 66.1
SalBow2G3647 Salvia bowleyana HOM05D004328 ORTHO05D005210 2.2e-93 346.3 236 66.1
Prupe.7G118400 Prunus persica HOM05D004328 ORTHO05D005210 2.8e-93 345.9 233 66.5
arahy.Tifrunner.gnm1.ann1.BXRJ0F Arachis hypogaea HOM05D004328 ORTHO05D005210 3.7e-93 345.5 236 64.8
PSO502G0015 Papaver somniferum HOM05D004328 ORTHO05D005210 3.7e-93 345.5 228 67.5
AUR62011605 Chenopodium quinoa HOM05D004328 ORTHO05D005210 4.8e-93 345.1 234 65.4
Lj5C63T9 Lonicera japonica HOM05D004328 ORTHO05D005210 4.8e-93 345.1 227 69.2
MD12G1017300 Malus domestica HOM05D004328 ORTHO05D005210 4.8e-93 345.1 240 64.6
QL09p020622 Quercus lobata HOM05D004328 ORTHO05D005210 4.8e-93 345.1 231 67.1
Atru.chr12.1869 Acer truncatum HOM05D004328 ORTHO05D005210 6.3e-93 344.7 228 67.1
MD14G1015000 Malus domestica HOM05D004328 ORTHO05D005210 6.3e-93 344.7 230 67.0
FAN05G3798 Fragaria x ananassa HOM05D004328 ORTHO05D005210 8.2e-93 344.4 235 66.0
CANSAT21G1275 Cannabis sativa HOM05D004328 ORTHO05D005210 1.1e-92 344.0 236 65.7
CDE06G0667 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 1.1e-92 344.0 238 65.1
Glyma.11G008400 Glycine max HOM05D004328 ORTHO05D005210 1.1e-92 344.0 231 65.4
Haze_00368 Corylus avellana HOM05D004328 ORTHO05D005210 1.4e-92 343.6 241 64.7
HanXRQChr14g0455981 Helianthus annuus HOM05D004328 ORTHO05D005210 1.4e-92 343.6 236 65.7
Phvul.011G017300 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 1.4e-92 343.6 240 63.3
FvH4_6g17800 Fragaria vesca HOM05D004328 ORTHO05D005210 1.8e-92 343.2 235 65.5
Solyc06g066800.2 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.8e-92 343.2 238 66.0
VMungo1127G1200 Vigna mungo HOM05D004328 ORTHO05D005210 1.8e-92 343.2 232 67.2
FAN02G3409 Fragaria x ananassa HOM05D004328 ORTHO05D005210 2.4e-92 342.8 235 65.5
Glyma.01G234500 Glycine max HOM05D004328 ORTHO05D005210 2.4e-92 342.8 231 66.2
Gohir.A02G114200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 2.4e-92 342.8 231 66.7
RcHm_v2.0_Chr3g0472051 Rosa chinensis HOM05D004328 ORTHO05D005210 2.4e-92 342.8 244 64.8
SEGI_10122 Sequoiadendron giganteum HOM05D004328 ORTHO05D005210 2.4e-92 342.8 232 65.9
Aqoxy7G02544 Aquilegia oxysepala HOM05D004328 ORTHO05D005210 4.1e-92 342.0 232 64.7
FAN05G2947 Fragaria x ananassa HOM05D004328 ORTHO05D005210 4.1e-92 342.0 235 65.5
Gorai.003G058000 Gossypium raimondii HOM05D004328 ORTHO05D005210 5.3e-92 341.7 231 67.1
Lsat_1_v5_gn_5_129800 Lactuca sativa HOM05D004328 ORTHO05D005210 5.3e-92 341.7 236 66.5
Carub.0005s0946 Capsella rubella HOM05D004328 ORTHO05D005210 1.2e-91 340.5 241 62.2
Gohir.D03G055200 Gossypium hirsutum HOM05D004328 ORTHO05D005210 1.6e-91 340.1 231 66.7
LjContig00222g0018106 Lotus japonicus HOM05D004328 ORTHO05D005210 2.0e-91 339.7 231 64.1
Phvul.002G041900 Phaseolus vulgaris HOM05D004328 ORTHO05D005210 2.0e-91 339.7 230 65.7
VMungo1215G1960 Vigna mungo HOM05D004328 ORTHO05D005210 4.5e-91 338.6 229 66.4
AagrBONN_evm.TU.Sc2ySwM_362.571 Anthoceros agrestis HOM05D004328 ORTHO05D005210 9.4e-89 330.9 226 65.5
SMO118G0121 Selaginella moellendorffii HOM05D004328 ORTHO05D005210 2.1e-88 329.7 226 65.9
CBR_g51102 Chara braunii HOM05D004328 ORTHO05D005210 1.0e-87 327.4 230 63.9
AUR62016419 Chenopodium quinoa HOM05D004328 ORTHO05D005210 2.0e-86 323.2 216 66.7
unitig_578.g16690 Utricularia gibba HOM05D004328 ORTHO05D005210 1.8e-84 316.6 249 59.8
Cpa.g.sc43.145 Carica papaya HOM05D004328 ORTHO05D005210 1.0e-79 300.8 190 70.0
GSVIVG01024323001 Vitis vinifera HOM05D004328 ORTHO05D005210 2.5e-65 253.1 180 65.0
MD07G1085100 Malus domestica HOM05D004328 ORTHO05D005210 2.1e-64 250.0 243 49.4
Hma1.2p1_0323F.1_g125290 Hydrangea macrophylla HOM05D004328 ORTHO05D005210 4.7e-64 248.8 231 52.4
Cc04_g03630 Coffea canephora HOM05D004328 ORTHO05D005210 1.6e-59 233.8 159 66.0
Solyc03g120410.3 Solanum lycopersicum HOM05D004328 ORTHO05D005210 1.3e-58 230.7 159 65.4
Pp3c20_18260 Physcomitrium patens HOM05D004328 ORTHO05D005210 1.5e-54 217.2 178 59.0
Haze_27513 Corylus avellana HOM05D004328 ORTHO05D005210 2.0e-54 216.9 231 47.6
CDE06G1981 Ceratophyllum demersum HOM05D004328 ORTHO05D005210 5.4e-44 182.2 241 40.2
CSS0035944 Camellia sinensis var. sinensis HOM05D004328 ORTHO05D005210 3.5e-35 152.9 194 43.3
GSVIVG01017160001 Vitis vinifera HOM05D004328 ORTHO05D005210 1.1e-28 131.3 92 66.3
HanXRQChr16g0528931 Helianthus annuus HOM05D004328 ORTHO05D005210 1.5e-22 110.9 92 58.7
CANSAT56G0697 Cannabis sativa HOM05D004328 ORTHO05D005210 7.1e-20 102.1 118 44.9
Actinidia15822 Actinidia chinensis HOM05D004328 ORTHO05D005210 9.6e-17 91.7 65 66.2
Sc12g0009110 Simmondsia chinensis HOM05D004328 ORTHO05D387867 7.1e-12 75.5 52 61.5
Zm00001eb029120 Zea mays HOM05D004328 ORTHO05D442189 2.1e-11 73.9 65 53.8


User provided reference genes

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