Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 2.9e-268 927.9 458 100.0
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 1.2e-155 553.9 449 61.0
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 3.1e-76 290.0 446 37.7
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 4.9e-74 282.7 496 34.9
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 8.4e-74 282.0 451 36.4
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 9.3e-73 278.5 452 35.2
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 1.2e-72 278.1 439 36.9
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 1.6e-72 277.7 457 35.9
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 3.5e-72 276.6 452 34.7
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 5.1e-71 272.7 458 34.9
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.5e-70 271.2 457 36.5
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 2.5e-70 270.4 467 33.8
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 7.4e-70 268.9 461 35.1
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 3.1e-68 263.5 468 35.9
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 1.2e-67 261.5 465 34.8
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 7.6e-67 258.8 462 34.0
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 5.0e-66 256.1 496 34.1
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 1.9e-65 254.2 471 31.8
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 2.5e-65 253.8 446 35.0
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 3.2e-65 253.4 460 34.8
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 3.2e-65 253.4 451 34.6
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 3.2e-65 253.4 460 34.1
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 2.7e-64 250.4 446 35.2
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 3.6e-64 250.0 448 33.0
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 4.6e-64 249.6 459 34.0
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 1.8e-63 247.7 453 34.4
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 5.1e-63 246.1 446 35.0
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 5.1e-63 246.1 466 34.3
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 2.5e-62 243.8 446 34.1
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 5.7e-62 242.7 468 32.7
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 1.7e-61 241.1 446 34.8
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 1.7e-61 241.1 461 34.7
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 2.8e-61 240.4 480 34.8
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 4.8e-61 239.6 451 32.2
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 6.3e-61 239.2 440 34.3
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 8.2e-61 238.8 446 33.9
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 8.2e-61 238.8 453 33.8
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 1.1e-60 238.4 464 35.1
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 1.4e-60 238.0 448 33.9
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 1.8e-60 237.7 495 32.1
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 4.1e-60 236.5 446 33.4
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 4.1e-60 236.5 446 33.4
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 1.2e-59 235.0 457 32.4
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 2.2e-58 230.7 454 31.7
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 3.8e-58 229.9 450 32.0
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 8.5e-58 228.8 431 34.6
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.2e-56 224.9 440 32.3
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.6e-56 224.6 439 31.7
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 2.3e-55 220.7 460 32.8
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 2.0e-54 217.6 455 29.5
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 8.2e-53 212.2 428 31.8
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 2.4e-52 210.7 450 30.9
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 3.1e-52 210.3 410 34.1
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 1.5e-51 208.0 393 34.6
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 4.7e-48 196.4 349 33.0
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 8.0e-48 195.7 420 31.2
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 3.9e-47 193.4 393 32.1
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 6.7e-47 192.6 370 31.9
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.1e-46 191.8 417 31.2
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 7.7e-43 179.1 400 30.8
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 8.5e-42 175.6 381 31.8
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 1.1e-41 175.3 410 32.0
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 1.9e-41 174.5 465 29.5
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 9.4e-41 172.2 326 31.0
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 1.4e-39 168.3 420 28.1
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 9.7e-38 162.2 370 29.7
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 5.3e-36 156.4 209 40.2
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 6.5e-34 149.4 287 32.1
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 1.4e-31 141.7 290 30.3
Cpa.g.sc87.15 Carica papaya HOM05D007808 ORTHO05D009895 9.1e-28 129.0 255 32.2
Haze_24684 Corylus avellana HOM05D007808 ORTHO05D009895 4.5e-27 126.7 157 40.8
Pp3c1_42330 Physcomitrium patens HOM05D007808 ORTHO05D009895 1.4e-20 105.1 477 25.4
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 7.8e-19 99.4 235 30.2
CiPaw.04G189400 Carya illinoinensis HOM05D007808 ORTHO05D009895 3.8e-18 97.1 89 48.3
AagrBONN_evm.TU.Sc2ySwM_117.2846 Anthoceros agrestis HOM05D007808 ORTHO05D009895 1.9e-17 94.7 444 23.6
Gorai.002G091900 Gossypium raimondii HOM05D007808 ORTHO05D009895 2.1e-16 91.3 218 27.1
SEGI_27571 Sequoiadendron giganteum HOM05D007808 ORTHO05D009895 6.4e-13 79.7 246 25.6
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 9.5e-09 65.9 150 30.7
PGSC0003DMG400003825 Solanum tuberosum HOM05D007808 ORTHO05D009895 2.1e-08 64.7 55 43.6
FAN27G0174 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.8e-08 64.3 53 47.2
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 6.2e-08 63.2 55 47.3


User provided reference genes

Program Settings