Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 2.3e-151 538.9 278 100.0
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.7e-72 275.8 301 55.8
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 1.9e-28 130.6 274 35.0
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.0e-26 124.8 319 30.7
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.3e-26 123.6 321 29.9
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 5.2e-26 122.5 314 31.5
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 1.2e-25 121.3 300 30.7
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 3.4e-25 119.8 291 30.9
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 7.5e-25 118.6 322 33.2
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.7e-24 117.5 297 30.6
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 3.7e-24 116.3 301 30.6
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 4.9e-24 115.9 292 31.2
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 4.9e-24 115.9 299 29.8
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 8.3e-24 115.2 312 29.5
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.8e-23 114.0 309 29.4
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 1.8e-23 114.0 295 30.5
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 2.4e-23 113.6 292 30.5
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.4e-23 113.6 260 32.7
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.4e-23 113.6 279 29.7
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.4e-23 113.6 312 29.5
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 3.2e-23 113.2 285 29.5
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 4.1e-23 112.8 299 30.1
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 7.0e-23 112.1 317 29.3
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 9.2e-23 111.7 299 29.4
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 1.6e-22 110.9 305 29.8
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 2.0e-22 110.5 297 30.0
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 2.0e-22 110.5 305 31.1
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.7e-22 110.2 302 32.1
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 3.5e-22 109.8 304 29.3
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 4.5e-22 109.4 292 30.1
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 4.5e-22 109.4 291 32.0
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 5.9e-22 109.0 313 30.0
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 5.9e-22 109.0 291 29.6
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 7.8e-22 108.6 290 31.0
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 1.3e-21 107.8 306 28.8
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 1.3e-21 107.8 290 30.0
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 1.3e-21 107.8 296 30.4
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.3e-21 107.8 280 30.4
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.3e-21 107.8 315 28.6
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 1.7e-21 107.5 299 29.8
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 2.9e-21 106.7 301 30.6
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 2.9e-21 106.7 316 29.1
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 3.9e-21 106.3 276 32.6
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 6.6e-21 105.5 258 32.2
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 6.6e-21 105.5 309 29.1
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 8.6e-21 105.1 299 30.8
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 1.1e-20 104.8 297 29.6
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 1.1e-20 104.8 286 33.9
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 1.5e-20 104.4 287 30.0
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 2.5e-20 103.6 305 30.8
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 2.5e-20 103.6 290 31.0
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.5e-20 103.6 271 31.7
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 5.6e-20 102.4 259 31.7
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 7.3e-20 102.1 259 31.7
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 7.3e-20 102.1 268 31.7
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 7.3e-20 102.1 309 30.7
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 1.2e-19 101.3 284 30.6
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 2.1e-19 100.5 275 30.2
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 2.1e-19 100.5 304 27.6
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 2.1e-19 100.5 310 29.4
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 2.8e-19 100.1 313 27.2
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 3.6e-19 99.8 299 29.4
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 3.6e-19 99.8 299 27.8
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 4.7e-19 99.4 296 28.4
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 4.7e-19 99.4 300 29.0
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 8.0e-19 98.6 265 28.3
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 1.0e-18 98.2 269 31.6
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.0e-18 98.2 331 27.5
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.0e-18 98.2 305 28.5
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.4e-18 97.8 265 30.2
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 1.4e-18 97.8 262 30.9
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.8e-18 97.4 301 28.6
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 1.8e-18 97.4 295 30.5
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.8e-18 97.4 323 27.9
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 2.3e-18 97.1 254 32.3
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.1e-18 96.7 274 29.6
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 3.1e-18 96.7 316 29.1
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 4.0e-18 96.3 274 31.8
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 4.0e-18 96.3 262 29.4
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 4.0e-18 96.3 280 31.1
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 6.8e-18 95.5 301 28.6
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-17 94.7 259 32.0
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 1.2e-17 94.7 259 32.0
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 1.2e-17 94.7 290 27.2
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 1.2e-17 94.7 314 29.6
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.5e-17 94.4 274 30.3
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 1.5e-17 94.4 316 30.7
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.5e-17 94.4 260 31.2
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 1.5e-17 94.4 242 29.3
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 1.5e-17 94.4 293 28.7
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 1.5e-17 94.4 287 28.6
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 1.5e-17 94.4 278 29.9
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 1.5e-17 94.4 283 29.3
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 3.4e-17 93.2 261 31.0
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 4.4e-17 92.8 316 28.2
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 5.8e-17 92.4 308 27.6
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 7.5e-17 92.0 300 28.3
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.5e-17 92.0 301 28.6
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.8e-17 91.7 306 28.1
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 9.8e-17 91.7 284 27.8
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 1.7e-16 90.9 276 30.8
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.7e-16 90.9 232 31.5
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 1.7e-16 90.9 315 27.9
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.2e-16 90.5 306 27.8
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.2e-16 90.5 304 27.0
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 2.9e-16 90.1 301 28.2
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 2.9e-16 90.1 301 28.2
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 2.9e-16 90.1 297 28.3
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.7e-16 89.7 301 28.2
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 3.7e-16 89.7 252 30.6
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 4.9e-16 89.4 281 27.4
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 4.9e-16 89.4 315 28.9
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 6.4e-16 89.0 277 30.3
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 1.1e-15 88.2 278 29.1
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 1.9e-15 87.4 258 30.6
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 2.4e-15 87.0 312 28.2
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 2.4e-15 87.0 265 32.1
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 2.4e-15 87.0 265 32.1
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 3.2e-15 86.7 282 29.8
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.2e-15 86.7 307 26.4
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 4.1e-15 86.3 305 28.2
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 4.1e-15 86.3 256 27.7
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 7.0e-15 85.5 306 26.1
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 1.2e-14 84.7 307 27.0
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 1.2e-14 84.7 274 27.4
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 1.6e-14 84.3 254 29.1
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.6e-14 84.3 278 30.6
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 1.6e-14 84.3 321 26.2
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 2.7e-14 83.6 270 31.9
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 3.5e-14 83.2 272 30.9
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.5e-14 83.2 250 28.0
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 6.0e-14 82.4 306 27.5
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 6.0e-14 82.4 313 25.6
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 7.8e-14 82.0 289 27.7
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 1.0e-13 81.6 254 28.7
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 1.3e-13 81.3 298 26.5
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 2.3e-13 80.5 267 31.5
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 2.3e-13 80.5 290 29.7
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.0e-13 80.1 277 27.4
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.0e-13 80.1 249 33.3
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 3.9e-13 79.7 309 27.2
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 3.9e-13 79.7 239 31.4
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 5.0e-13 79.3 176 30.7
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 5.0e-13 79.3 277 27.8
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 4.3e-12 76.3 304 27.0
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 4.3e-12 76.3 274 28.5
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 4.3e-12 76.3 255 27.1
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 5.6e-12 75.9 241 33.2
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 7.3e-12 75.5 274 27.0
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 1.2e-11 74.7 264 29.2
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.2e-11 74.7 280 26.1
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 2.1e-11 73.9 273 31.1
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 2.1e-11 73.9 275 25.5
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 3.6e-11 73.2 159 33.3
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 4.7e-11 72.8 250 27.6
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 4.7e-11 72.8 250 27.6
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 6.2e-11 72.4 306 25.8
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 6.8e-10 68.9 82 43.9
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 8.9e-10 68.6 126 34.1
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 2.0e-09 67.4 240 29.6
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 4.4e-09 66.2 268 25.4
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 1.7e-08 64.3 217 30.9
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 2.4e-07 60.5 174 26.4


User provided reference genes

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