Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 2.0e-208 728.8 357 100.0
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 6.8e-188 660.6 356 89.6
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 1.8e-164 582.8 360 76.7
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 6.8e-164 580.9 360 78.3
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 6.8e-164 580.9 360 78.1
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 8.9e-164 580.5 356 77.5
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 1.2e-163 580.1 358 76.8
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 1.5e-163 579.7 355 77.7
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 2.6e-163 578.9 358 77.7
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 4.4e-163 578.2 359 76.6
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 4.4e-163 578.2 358 77.1
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 4.4e-163 578.2 361 77.0
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 5.8e-163 577.8 358 76.0
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 7.6e-163 577.4 360 76.9
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 9.9e-163 577.0 359 76.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 2.2e-162 575.9 356 77.0
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.2e-162 575.9 354 78.0
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.2e-162 575.9 367 74.7
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 3.8e-162 575.1 359 76.0
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 3.8e-162 575.1 358 75.4
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 4.9e-162 574.7 357 77.0
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 4.9e-162 574.7 360 76.7
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 6.4e-162 574.3 354 77.7
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.4e-162 574.3 354 77.7
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.4e-162 574.3 354 77.7
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 6.4e-162 574.3 356 75.8
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 8.4e-162 573.9 358 75.1
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 8.4e-162 573.9 354 76.8
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 1.1e-161 573.5 354 76.0
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.9e-161 572.8 355 76.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 2.4e-161 572.4 354 77.1
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 7.1e-161 570.9 354 77.4
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 7.1e-161 570.9 361 75.3
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.2e-160 570.1 354 75.4
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.1e-160 569.3 354 77.1
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.1e-160 569.3 355 74.9
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 3.5e-160 568.5 354 76.0
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 3.5e-160 568.5 363 74.9
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 4.6e-160 568.2 359 74.4
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 4.6e-160 568.2 355 76.3
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 1.3e-159 566.6 356 74.7
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.7e-159 566.2 355 75.8
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.7e-159 566.2 361 74.8
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 3.9e-159 565.1 357 75.6
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 6.6e-159 564.3 355 75.8
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 8.7e-159 563.9 361 73.7
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.1e-158 563.5 353 75.4
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.1e-158 563.5 354 74.3
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.1e-158 563.5 358 75.4
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.5e-158 563.1 355 75.5
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.9e-158 562.8 354 75.1
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 2.5e-158 562.4 357 75.1
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.5e-158 562.4 357 75.1
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 3.3e-158 562.0 385 71.7
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 7.3e-158 560.8 357 76.5
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 9.6e-158 560.5 352 76.1
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.3e-157 560.1 353 74.2
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 1.6e-157 559.7 359 74.7
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 2.1e-157 559.3 358 74.9
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.1e-157 559.3 354 75.7
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.1e-157 559.3 348 75.6
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 2.8e-157 558.9 362 74.3
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 3.6e-157 558.5 363 74.1
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.6e-157 558.5 387 70.0
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 6.2e-157 557.8 365 73.4
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 1.8e-156 556.2 359 74.9
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 2.4e-156 555.8 352 75.9
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 3.1e-156 555.4 355 75.2
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 3.1e-156 555.4 356 75.0
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 4.0e-156 555.1 355 74.4
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 6.9e-156 554.3 358 74.0
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 1.5e-155 553.1 365 73.2
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 3.4e-155 552.0 365 72.9
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 5.8e-155 551.2 354 73.7
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 2.9e-154 548.9 359 74.9
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 3.8e-154 548.5 354 74.0
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 6.4e-154 547.7 364 71.4
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 8.4e-154 547.4 355 74.4
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.1e-153 547.0 361 72.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 1.1e-153 547.0 355 74.6
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 1.1e-153 547.0 355 74.6
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.9e-153 546.2 357 72.0
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 2.4e-153 545.8 355 73.2
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 4.2e-153 545.0 355 74.6
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 9.3e-153 543.9 356 73.9
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.2e-152 543.5 361 70.4
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.6e-152 543.1 361 70.1
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.6e-152 543.1 361 70.1
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 3.5e-152 542.0 354 74.3
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 3.5e-152 542.0 356 73.9
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 4.6e-152 541.6 355 73.8
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.3e-151 539.3 355 72.1
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-149 533.5 446 61.7
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 4.8e-149 531.6 414 64.7
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 8.1e-149 530.8 373 68.6
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.4e-148 529.3 326 77.6
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 4.5e-147 525.0 352 71.3
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.4e-145 519.2 358 69.0
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.4e-145 519.2 452 58.2
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 2.7e-144 515.8 434 60.6
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 6.0e-144 514.6 358 67.0
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 3.3e-142 508.8 358 67.0
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 4.3e-142 508.4 360 66.1
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.1e-140 503.8 354 66.7
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 1.3e-138 496.9 350 66.9
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 1.9e-137 493.0 357 65.0
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 3.2e-137 492.3 353 65.4
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 2.7e-136 489.2 352 64.8
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 2.7e-136 489.2 360 65.6
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 3.3e-134 482.3 360 64.2
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 5.3e-132 474.9 385 63.6
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.0e-130 470.7 362 61.6
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 2.7e-128 462.6 270 80.0
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 4.3e-126 455.3 520 47.3
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 8.5e-122 441.0 382 57.9
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 1.5e-118 430.3 251 79.3
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 3.3e-118 429.1 344 64.2
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 4.8e-117 425.2 270 75.9
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 1.8e-111 406.8 273 73.3
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 9.1e-108 394.4 345 56.8
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 2.7e-99 366.3 377 49.9
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 1.3e-98 364.0 345 53.3
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.0e-98 362.1 260 66.2
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 4.3e-81 305.8 270 57.8
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 9.8e-78 294.7 223 63.7
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 1.4e-76 290.8 178 75.8
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 2.4e-76 290.0 163 80.4
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 8.6e-74 281.6 201 67.2
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 4.3e-73 279.3 197 67.5
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 1.6e-72 277.3 176 73.3
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 4.3e-65 252.7 348 43.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 2.6e-62 243.4 180 64.4
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 5.6e-49 199.1 174 54.0
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.3e-49 198.7 118 79.7
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 2.1e-43 180.6 167 54.5
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 5.1e-42 176.0 106 76.4
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.9e-37 159.5 105 73.3
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 7.1e-36 155.6 89 82.0
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.5e-22 111.3 247 32.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 2.9e-21 107.1 204 36.8
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 3.5e-19 100.1 77 61.0
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 5.1e-18 96.3 88 53.4
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 7.4e-17 92.4 62 64.5
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 9.7e-17 92.0 112 50.0
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 4.8e-16 89.7 83 57.8
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 4.8e-16 89.7 96 50.0
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 9.0e-15 85.5 55 70.9
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 4.2e-12 76.6 52 65.4
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.8e-10 71.2 76 50.0
ATR0661G511 Amborella trichopoda HOM05D000018 ORTHO05D006467 3.1e-07 60.5 198 20.7
Gorai.004G196400 Gossypium raimondii HOM05D001438 ORTHO05D001336 1.2e-06 58.5 218 26.1


User provided reference genes

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