Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Zm00001eb187890 Zea mays HOM05D007538 ORTHO05D009464 3.5e-186 654.8 335 100.0
Zm00001eb251400 Zea mays HOM05D007538 ORTHO05D009464 9.7e-112 407.5 289 77.5
Os02g0697200 Oryza sativa ssp. japonica HOM05D007538 ORTHO05D009464 1.1e-81 307.8 347 54.8
MD06G1026300 Malus domestica HOM05D007538 ORTHO05D009464 1.5e-27 127.9 337 33.2
Gohir.A12G206200 Gossypium hirsutum HOM05D007538 ORTHO05D009464 1.7e-23 114.4 342 31.6
Glyma.09G207600 Glycine max HOM05D007538 ORTHO05D009464 1.9e-22 110.9 340 31.2
Ciclev10001787m.g Citrus clementina HOM05D007538 ORTHO05D009464 4.2e-22 109.8 358 31.3
FAN13G1023 Fragaria x ananassa HOM05D007538 ORTHO05D009464 5.5e-22 109.4 343 29.4
Gorai.008G224100 Gossypium raimondii HOM05D007538 ORTHO05D009464 1.6e-21 107.8 345 30.7
VMungo1215G0128 Vigna mungo HOM05D007538 ORTHO05D009464 2.1e-21 107.5 342 31.3
Cfa012515 Carpinus fangiana HOM05D007538 ORTHO05D009464 2.7e-21 107.1 349 30.9
FvH4_5g23080 Fragaria vesca HOM05D007538 ORTHO05D009464 2.7e-21 107.1 336 28.6
TAR629G0149 Trochodendron aralioides HOM05D007538 ORTHO05D009464 2.7e-21 107.1 365 28.5
Gohir.D12G208500 Gossypium hirsutum HOM05D007538 ORTHO05D009464 3.6e-21 106.7 354 30.5
RcHm_v2.0_Chr7g0211801 Rosa chinensis HOM05D007538 ORTHO05D009464 3.6e-21 106.7 347 27.7
FAN08G1825 Fragaria x ananassa HOM05D007538 ORTHO05D009464 4.6e-21 106.3 341 28.4
FAN18G3589 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.0e-20 105.1 329 29.5
Thecc.03G310000 Theobroma cacao HOM05D007538 ORTHO05D009464 1.4e-20 104.8 357 28.6
Lj2g0003780 Lotus japonicus HOM05D007538 ORTHO05D009464 1.8e-20 104.4 342 32.5
CANSAT21G1184 Cannabis sativa HOM05D007538 ORTHO05D009464 3.0e-20 103.6 345 29.6
Prupe.5G028100 Prunus persica HOM05D007538 ORTHO05D009464 3.0e-20 103.6 234 34.2
TWI60G0985 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 5.1e-20 102.8 339 29.5
Hund14370 Selenicereus undatus HOM05D007538 ORTHO05D009464 6.7e-20 102.4 345 29.9
Phvul.002G136900 Phaseolus vulgaris HOM05D007538 ORTHO05D009464 8.8e-20 102.1 338 32.2
QL12p001632 Quercus lobata HOM05D007538 ORTHO05D009464 8.8e-20 102.1 341 29.3
AUR62007351 Chenopodium quinoa HOM05D007538 ORTHO05D009464 1.1e-19 101.7 350 30.9
Hma1.2p1_1569F.1_g291220 Hydrangea macrophylla HOM05D007538 ORTHO05D009464 1.5e-19 101.3 349 29.2
Duzib205G0978 Durio zibethinus HOM05D007538 ORTHO05D009464 3.3e-19 100.1 348 30.2
AUR62018643 Chenopodium quinoa HOM05D007538 ORTHO05D009464 4.3e-19 99.8 342 30.7
TPR.G19431 Trifolium pratense HOM05D007538 ORTHO05D009464 4.3e-19 99.8 339 30.4
Haze_08148 Corylus avellana HOM05D007538 ORTHO05D009464 5.7e-19 99.4 353 29.5
Migut.E00746 Erythranthe guttata HOM05D007538 ORTHO05D009464 1.3e-18 98.2 341 29.3
Dinv25258 Davidia involucrata HOM05D007538 ORTHO05D009464 2.2e-18 97.4 346 28.6
Potri.001G137000 Populus trichocarpa HOM05D007538 ORTHO05D009464 8.2e-18 95.5 346 29.8
CiPaw.12G068100 Carya illinoinensis HOM05D007538 ORTHO05D009464 2.4e-17 94.0 343 30.9
Lalb_Chr05g0215781 Lupinus albus HOM05D007538 ORTHO05D009464 4.1e-17 93.2 345 30.1
Ca_25180_v3 Cicer arietinum L. HOM05D007538 ORTHO05D009464 5.3e-17 92.8 335 31.0
arahy.Tifrunner.gnm1.ann1.IVG2V7 Arachis hypogaea HOM05D007538 ORTHO05D009464 9.1e-17 92.0 346 32.7
arahy.Tifrunner.gnm1.ann1.UGGX0P Arachis hypogaea HOM05D007538 ORTHO05D009464 9.1e-17 92.0 346 32.7
Nn1g00207 Nelumbo nucifera HOM05D007538 ORTHO05D009464 1.5e-16 91.3 345 28.4
Cc08_g03440 Coffea canephora HOM05D007538 ORTHO05D009464 2.6e-16 90.5 325 28.6
DCAR_008224 Daucus carota HOM05D007538 ORTHO05D009464 5.9e-16 89.4 341 27.6
Eucgr.E00229 Eucalyptus grandis HOM05D007538 ORTHO05D009464 5.9e-16 89.4 348 29.6
COL.COLO4_16943 Corchorus olitorius HOM05D007538 ORTHO05D009464 1.0e-15 88.6 337 29.7
Medtr5g029310 Medicago truncatula HOM05D007538 ORTHO05D009464 1.0e-15 88.6 335 28.4
FAN04G2865 Fragaria x ananassa HOM05D007538 ORTHO05D009464 1.3e-15 88.2 326 27.9
CSS0028782 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 1.7e-15 87.8 351 28.5
PGR042G1771 Punica granatum HOM05D007538 ORTHO05D009464 8.5e-15 85.5 342 28.7
CSS0038946 Camellia sinensis var. sinensis HOM05D007538 ORTHO05D009464 1.9e-14 84.3 338 28.7
Manes.17G017000 Manihot esculenta HOM05D007538 ORTHO05D009464 5.5e-14 82.8 366 29.2
GSVIVG01013092001 Vitis vinifera HOM05D007538 ORTHO05D009464 5.5e-14 82.8 347 29.4
CANSAT21G1947 Cannabis sativa HOM05D007538 ORTHO05D009464 7.2e-14 82.4 286 29.7
Glyma.01G014500 Glycine max HOM05D007538 ORTHO05D009464 1.6e-13 81.3 312 30.8
Lalb_Chr16g0381091 Lupinus albus HOM05D007538 ORTHO05D009464 3.6e-13 80.1 345 29.0
Oeu027088.1 Olea europaea HOM05D007538 ORTHO05D009464 4.7e-13 79.7 377 28.6
SalBow6G3044 Salvia bowleyana HOM05D007538 ORTHO05D009464 4.7e-13 79.7 365 28.5
PGSC0003DMG400014793 Solanum tuberosum HOM05D007538 ORTHO05D009464 4.7e-13 79.7 327 29.1
Sabra01G0106100 Salix brachista HOM05D007538 ORTHO05D009464 6.1e-13 79.3 336 28.9
Aqoxy3G02177 Aquilegia oxysepala HOM05D007538 ORTHO05D009464 7.9e-13 79.0 339 28.0
Atru.chr6.1522 Acer truncatum HOM05D007538 ORTHO05D009464 1.8e-12 77.8 296 30.1
Nitab4.5_0000809g0070 Nicotiana tabacum HOM05D007538 ORTHO05D009464 1.8e-12 77.8 327 26.9
Solyc08g076430.3 Solanum lycopersicum HOM05D007538 ORTHO05D009464 5.1e-12 76.3 332 27.7
EL10Ac5g12015 Beta vulgaris HOM05D007538 ORTHO05D009464 6.7e-12 75.9 324 29.9
Nitab4.5_0000529g0180 Nicotiana tabacum HOM05D007538 ORTHO05D009464 6.7e-12 75.9 324 28.4
TWI15G0751 Tripterygium wilfordii HOM05D007538 ORTHO05D009464 6.7e-12 75.9 284 29.2
Rhsim11G0021400 Rhododendron simsii HOM05D007538 ORTHO05D009464 8.8e-12 75.5 348 27.9
PSO063G5413 Papaver somniferum HOM05D007538 ORTHO05D009464 1.1e-11 75.1 343 28.6
Sc01g0007170 Simmondsia chinensis HOM05D007538 ORTHO05D009464 1.1e-11 75.1 219 30.6
Sopen08g025010 Solanum pennellii HOM05D007538 ORTHO05D009464 1.1e-11 75.1 332 27.7
Actinidia01319 Actinidia chinensis HOM05D007538 ORTHO05D009464 1.5e-11 74.7 227 30.0
vmacro00280 Vaccinium macrocarpon HOM05D007538 ORTHO05D009464 2.0e-11 74.3 324 28.4
Ah.12g055490 Amaranthus hybridus HOM05D007538 ORTHO05D009464 3.3e-11 73.6 233 30.0
ECA240G2786 Erigeron canadensis HOM05D007538 ORTHO05D009464 4.4e-11 73.2 339 27.1
HPP92_020896 Vanilla planifolia HOM05D007538 ORTHO05D009464 4.4e-11 73.2 334 26.3
Psat0s3175g0080 Pisum sativum HOM05D007538 ORTHO05D009464 5.7e-11 72.8 320 27.2
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 2.2e-10 70.9 272 28.3
Peaxi162Scf00170g00623 Petunia axillaris HOM05D007538 ORTHO05D009464 3.7e-10 70.1 317 26.2
MELO3C013823.2 Cucumis melo HOM05D007538 ORTHO05D009464 1.8e-09 67.8 334 28.1
FAN18G1171 Fragaria x ananassa HOM05D007538 ORTHO05D009464 4.1e-09 66.6 321 23.4
unitig_22.g5510 Utricularia gibba HOM05D007538 ORTHO05D009464 2.0e-08 64.3 364 29.4
SEGI_18774 Sequoiadendron giganteum HOM05D007538 ORTHO05D009464 5.9e-08 62.8 340 24.4
ClCG10G001280 Citrullus lanatus HOM05D007538 ORTHO05D009464 1.0e-07 62.0 332 25.3
CsaV3_3G001350 Cucumis sativus L. HOM05D007538 ORTHO05D009464 1.3e-07 61.6 332 28.6
MSTRG.13737 Avicennia marina HOM05D007538 ORTHO05D009464 2.9e-07 60.5 365 26.0
Lsat_1_v5_gn_6_80020 Lactuca sativa HOM05D007538 ORTHO05D009464 9.4e-06 55.5 316 26.6


User provided reference genes

Program Settings